Wall clock time and date at job start Tue Mar 31 2020 16:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99893 * 2 1 4 4 H 1.48506 * 109.47080 * 239.99554 * 3 2 1 5 5 H 1.48500 * 109.47566 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47354 * 119.99799 * 3 2 1 7 7 C 1.38804 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00199 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00303 * 0.02562 * 7 2 1 10 10 C 1.46923 * 125.37813 * 179.97438 * 9 7 2 11 11 C 1.54188 * 106.26507 * 162.13244 * 10 9 7 12 12 H 1.09000 * 109.27853 * 271.43824 * 11 10 9 13 13 C 1.50713 * 110.50568 * 151.08722 * 11 10 9 14 14 C 1.51324 * 113.44837 * 289.43735 * 13 11 10 15 15 C 1.50532 * 112.60208 * 305.10897 * 14 13 11 16 16 N 1.44512 * 112.65516 * 42.37341 * 15 14 13 17 17 C 1.34778 * 116.63179 * 154.85862 * 16 15 14 18 18 O 1.21563 * 120.00056 * 176.18752 * 17 16 15 19 19 C 1.47718 * 119.99894 * 356.18770 * 17 16 15 20 20 C 1.40951 * 125.97384 * 187.01385 * 19 17 16 21 21 C 1.36168 * 107.95133 * 179.75021 * 20 19 17 22 22 N 1.35801 * 107.31513 * 0.76349 * 21 20 19 23 23 N 1.31839 * 125.97762 * 7.31850 * 19 17 16 24 24 C 1.47422 * 108.07627 * 178.98927 * 22 21 20 25 25 C 1.54647 * 102.34958 * 344.74378 * 24 22 21 26 26 O 1.36122 * 140.87882 * 180.75633 * 21 20 19 27 27 C 1.44097 * 126.73533 * 334.87772 * 16 15 14 28 28 H 1.09008 * 108.45877 * 254.35770 * 27 16 15 29 29 C 1.46824 * 125.37457 * 359.96902 * 9 7 2 30 30 H 0.97001 * 119.99778 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.10032 * 42.92665 * 10 9 7 32 32 H 1.08999 * 110.14821 * 281.35365 * 10 9 7 33 33 H 1.09000 * 108.66895 * 50.42032 * 13 11 10 34 34 H 1.09001 * 108.66810 * 168.45505 * 13 11 10 35 35 H 1.09002 * 108.97876 * 65.19279 * 14 13 11 36 36 H 1.08991 * 108.98398 * 183.90787 * 14 13 11 37 37 H 1.09001 * 108.62514 * 281.70220 * 15 14 13 38 38 H 1.09010 * 108.98110 * 163.28330 * 15 14 13 39 39 H 1.08001 * 126.02089 * 359.88616 * 20 19 17 40 40 H 1.08993 * 110.83293 * 102.95499 * 24 22 21 41 41 H 1.09003 * 110.82999 * 226.52944 * 24 22 21 42 42 H 1.08998 * 110.84956 * 266.64595 * 25 24 22 43 43 H 1.09005 * 111.02453 * 143.09681 * 25 24 22 44 44 H 1.08992 * 109.84143 * 300.43340 * 29 9 7 45 45 H 1.08996 * 109.83740 * 61.33818 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 1.9377 -3.7236 0.0005 11 6 0.8370 -4.7032 0.4547 12 1 0.8504 -4.7807 1.5418 13 6 1.0634 -6.0669 -0.1456 14 6 0.8058 -6.1192 -1.6358 15 6 -0.5699 -5.6303 -2.0026 16 7 -0.9520 -4.4435 -1.2718 17 6 -1.8693 -3.6453 -1.8531 18 8 -2.2864 -2.6682 -1.2623 19 6 -2.3678 -3.9577 -3.2081 20 6 -3.2143 -3.1433 -3.9871 21 6 -3.4373 -3.7801 -5.1698 22 7 -2.7677 -4.9608 -5.1258 23 7 -2.1033 -5.0496 -3.8979 24 6 -3.0179 -5.6760 -6.3903 25 6 -4.2291 -4.9090 -6.9701 26 8 -4.0978 -3.6172 -6.3489 27 6 -0.4535 -4.0252 0.0138 28 1 -1.2260 -4.2102 0.7604 29 6 -0.1362 -2.5256 0.0006 30 1 -0.4850 0.8401 -0.0004 31 1 2.7751 -3.7519 0.6977 32 1 2.2773 -3.9810 -1.0027 33 1 2.0957 -6.3631 0.0406 34 1 0.4024 -6.7795 0.3479 35 1 1.5374 -5.4914 -2.1443 36 1 0.9225 -7.1468 -1.9800 37 1 -1.2888 -6.4215 -1.7900 38 1 -0.5949 -5.4098 -3.0699 39 1 -3.6137 -2.1825 -3.6978 40 1 -2.1573 -5.6009 -7.0550 41 1 -3.2735 -6.7188 -6.2018 42 1 -5.1653 -5.3858 -6.6798 43 1 -4.1574 -4.8271 -8.0547 44 1 -0.5531 -2.0432 0.8847 45 1 -0.5506 -2.0706 -0.8989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050065346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:43 Heat of formation + Delta-G solvation = 73.081060 kcal Electronic energy + Delta-G solvation = -29951.048401 eV Core-core repulsion = 25972.793841 eV Total energy + Delta-G solvation = -3978.254561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.40855 -41.99905 -39.82542 -38.88363 -37.09085 -34.80021 -34.23289 -33.80170 -31.76122 -30.82108 -29.96128 -28.84544 -27.33118 -26.14832 -25.06134 -23.60843 -23.42084 -22.66058 -22.17771 -20.64396 -19.31065 -18.95038 -18.45889 -18.07330 -17.60512 -17.35024 -17.00375 -16.54567 -16.42711 -15.94166 -15.74939 -15.50533 -15.19629 -15.11278 -15.01571 -14.48966 -14.23075 -14.10655 -13.94230 -13.69798 -13.67093 -13.10260 -13.04830 -12.92295 -12.76975 -12.62120 -12.22786 -12.15970 -12.07259 -11.93208 -11.73040 -11.46766 -11.34692 -11.27910 -10.84703 -10.57626 -10.20570 -9.70671 -9.42685 -8.81125 -7.75910 -5.16006 0.14343 0.82867 0.93823 1.42362 1.47549 1.54287 1.68877 2.14136 2.29963 2.51414 2.99747 3.34145 3.37775 3.57613 3.71763 3.81768 3.88146 3.88772 4.02584 4.05587 4.14028 4.15854 4.26303 4.41363 4.50204 4.59479 4.61555 4.66508 4.70221 4.72472 4.77161 4.89372 4.93274 4.99758 5.16209 5.19014 5.26640 5.37659 5.45590 5.48229 5.54345 5.75743 5.84599 6.02667 6.24561 6.31976 6.43790 7.08803 7.16885 7.84003 8.47080 9.30418 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.004117 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.441350 B = 6799.326500 C = 8297.176229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.250 4.250 8 H 0.084 0.916 9 N -0.630 5.630 10 C 0.136 3.864 11 C -0.088 4.088 12 H 0.092 0.908 13 C -0.097 4.097 14 C -0.123 4.123 15 C 0.099 3.901 16 N -0.570 5.570 17 C 0.567 3.433 18 O -0.540 6.540 19 C 0.047 3.953 20 C -0.247 4.247 21 C 0.245 3.755 22 N -0.411 5.411 23 N -0.213 5.213 24 C 0.087 3.913 25 C 0.038 3.962 26 O -0.293 6.293 27 C 0.141 3.859 28 H 0.059 0.941 29 C 0.179 3.821 30 H 0.243 0.757 31 H 0.042 0.958 32 H 0.019 0.981 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.116 0.884 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.147 0.853 40 H 0.125 0.875 41 H 0.143 0.857 42 H 0.112 0.888 43 H 0.169 0.831 44 H 0.003 0.997 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 -21.494 -15.211 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.379 4.379 8 H 0.102 0.898 9 N -0.357 5.357 10 C 0.011 3.989 11 C -0.107 4.107 12 H 0.110 0.890 13 C -0.135 4.135 14 C -0.160 4.160 15 C -0.023 4.023 16 N -0.302 5.302 17 C 0.353 3.647 18 O -0.415 6.415 19 C -0.118 4.118 20 C -0.278 4.278 21 C 0.075 3.925 22 N -0.208 5.208 23 N -0.045 5.045 24 C -0.031 4.031 25 C -0.037 4.037 26 O -0.200 6.200 27 C 0.036 3.964 28 H 0.077 0.923 29 C 0.054 3.946 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.165 0.835 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.130 0.870 43 H 0.187 0.813 44 H 0.021 0.979 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.880 -21.862 -15.057 27.188 hybrid contribution -0.242 2.423 0.238 2.447 sum -6.122 -19.439 -14.818 25.198 Atomic orbital electron populations 1.70321 1.06308 1.24946 1.57416 1.25771 0.96527 1.01276 1.02582 0.85159 0.77050 0.78795 0.78343 1.20291 1.22319 1.19764 1.19401 0.90921 0.83790 1.43814 0.89833 1.44711 1.02362 1.01419 1.87182 1.21619 0.95232 0.84404 0.97662 1.21363 0.91959 0.95992 1.01402 0.88950 1.20521 1.03920 0.93702 0.95323 1.20987 0.94944 1.03260 0.96858 1.21447 0.97990 0.85551 0.97314 1.46717 1.39721 1.24125 1.19621 1.17563 0.80589 0.82673 0.83908 1.90893 1.58443 1.28166 1.64007 1.21705 1.00220 0.94313 0.95525 1.20045 1.10967 1.05092 0.91663 1.20522 0.93168 0.90031 0.88743 1.51480 1.37573 1.17202 1.14544 1.77794 1.16654 1.19913 0.90123 1.23843 1.00721 0.99897 0.78606 1.24985 0.98496 0.78185 1.02006 1.87159 1.73036 1.32586 1.27176 1.20795 0.96468 0.95691 0.83416 0.92258 1.21209 0.83363 0.90287 0.99734 0.94811 0.93976 0.96306 0.89034 0.89783 0.93297 0.86575 0.90686 0.87956 0.83479 0.85735 0.83914 0.86962 0.81328 0.97881 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.36 10.26 21.65 0.22 -63.14 16 2 C -0.07 -4.24 5.48 84.86 0.47 -3.77 16 3 Si 0.98 49.49 29.55 68.60 2.03 51.52 16 4 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 6 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.25 -15.23 10.25 84.03 0.86 -14.37 16 8 H 0.08 4.78 7.83 -2.91 -0.02 4.76 16 9 N -0.63 -35.61 3.39 -697.25 -2.36 -37.98 16 10 C 0.14 5.85 6.65 86.70 0.58 6.43 16 11 C -0.09 -3.06 3.08 -11.37 -0.04 -3.09 16 12 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 13 C -0.10 -2.30 5.19 29.30 0.15 -2.15 16 14 C -0.12 -2.88 5.75 29.25 0.17 -2.71 16 15 C 0.10 2.84 5.17 85.95 0.44 3.29 16 16 N -0.57 -22.32 3.09 -817.22 -2.53 -24.84 16 17 C 0.57 25.35 6.85 86.75 0.59 25.94 16 18 O -0.54 -29.41 14.06 -3.91 -0.06 -29.46 16 19 C 0.05 1.75 6.70 42.31 0.28 2.03 16 20 C -0.25 -8.86 10.61 22.45 0.24 -8.63 16 21 C 0.25 6.73 8.32 83.60 0.70 7.43 16 22 N -0.41 -9.52 5.01 -453.36 -2.27 -11.79 16 23 N -0.21 -6.38 8.89 -48.51 -0.43 -6.81 16 24 C 0.09 0.75 8.10 86.76 0.70 1.45 16 25 C 0.04 0.24 8.08 72.54 0.59 0.83 16 26 O -0.29 -5.93 11.19 -94.93 -1.06 -7.00 16 27 C 0.14 6.06 3.11 45.30 0.14 6.20 16 28 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 29 C 0.18 10.23 4.13 86.41 0.36 10.59 16 30 H 0.24 16.04 8.31 -92.71 -0.77 15.27 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.02 0.82 6.68 -2.39 -0.02 0.80 16 33 H 0.09 1.81 8.11 -2.39 -0.02 1.79 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.05 1.34 6.98 -2.39 -0.02 1.32 16 36 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 3.08 4.70 -19.26 -0.09 2.99 16 39 H 0.15 5.58 8.06 -2.91 -0.02 5.55 16 40 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.17 -0.26 8.14 -2.38 -0.02 -0.28 16 44 H 0.00 0.20 7.36 -2.39 -0.02 0.18 16 45 H 0.04 2.76 4.54 -2.39 -0.01 2.75 16 Total: -1.00 -91.34 348.24 0.71 -90.62 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.94 Total: 9.41 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 6.23 Total: 29.47 kcal Atomic # 7 Polarization: -137.19 SS G_CDS: -7.37 Total: -144.56 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.12 Total: -36.46 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 2.03 Total: 51.52 kcal Total: -91.34 0.71 -90.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050065346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.705 kcal (2) G-P(sol) polarization free energy of solvation -91.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds