Wall clock time and date at job start Tue Mar 31 2020 16:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99961 * 2 1 4 4 H 1.48494 * 109.47063 * 240.00089 * 3 2 1 5 5 H 1.48507 * 109.47121 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47395 * 119.99971 * 3 2 1 7 7 C 1.38806 * 120.00492 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00359 * 162.51440 * 7 2 1 9 9 N 1.36939 * 119.99809 * 342.23050 * 7 2 1 10 10 C 1.46882 * 120.46551 * 331.56649 * 9 7 2 11 11 C 1.52860 * 109.02035 * 235.48648 * 10 9 7 12 12 C 1.52674 * 109.17092 * 307.81498 * 11 10 9 13 13 C 1.53487 * 113.61971 * 188.98535 * 12 11 10 14 14 N 1.47674 * 85.98586 * 137.71352 * 13 12 11 15 15 C 1.34770 * 134.45659 * 155.70076 * 14 13 12 16 16 O 1.21577 * 120.00285 * 179.97438 * 15 14 13 17 17 C 1.47724 * 120.00274 * 359.97421 * 15 14 13 18 18 C 1.40943 * 125.97589 * 180.02562 * 17 15 14 19 19 C 1.36174 * 107.95066 * 179.77162 * 18 17 15 20 20 N 1.35802 * 107.31141 * 0.53364 * 19 18 17 21 21 N 1.31840 * 125.96942 * 359.68985 * 17 15 14 22 22 C 1.47422 * 108.06927 * 179.18221 * 20 19 18 23 23 C 1.54642 * 102.35059 * 344.68741 * 22 20 19 24 24 O 1.36117 * 140.87764 * 180.69804 * 19 18 17 25 25 C 1.47669 * 91.08411 * 335.68351 * 14 13 12 26 26 C 1.52669 * 113.18366 * 57.46411 * 12 11 10 27 27 C 1.46876 * 120.46786 * 151.83874 * 9 7 2 28 28 H 0.96997 * 120.00262 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.59244 * 355.31226 * 10 9 7 30 30 H 1.09007 * 109.59079 * 115.74279 * 10 9 7 31 31 H 1.09000 * 109.61256 * 187.84268 * 11 10 9 32 32 H 1.08996 * 109.44377 * 67.69407 * 11 10 9 33 33 H 1.09000 * 113.79026 * 251.97701 * 13 12 11 34 34 H 1.08997 * 113.79043 * 23.44880 * 13 12 11 35 35 H 1.08000 * 126.02459 * 359.80205 * 18 17 15 36 36 H 1.08996 * 110.83078 * 226.47353 * 22 20 19 37 37 H 1.09003 * 110.83324 * 102.90287 * 22 20 19 38 38 H 1.09005 * 110.85452 * 266.66588 * 23 22 20 39 39 H 1.09001 * 111.03231 * 143.10861 * 23 22 20 40 40 H 1.08999 * 113.78964 * 270.04512 * 25 14 13 41 41 H 1.09004 * 113.79064 * 138.58007 * 25 14 13 42 42 H 1.09000 * 109.53154 * 182.51600 * 26 12 11 43 43 H 1.09000 * 109.59592 * 62.33084 * 26 12 11 44 44 H 1.09007 * 109.58890 * 244.26090 * 27 9 7 45 45 H 1.08998 * 109.59146 * 4.69340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7466 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0528 -1.2237 -0.2805 9 7 1.3746 -2.3595 0.3630 10 6 0.2471 -2.3268 1.3037 11 6 0.5495 -3.2595 2.4765 12 6 0.9354 -4.6345 1.9369 13 6 1.0490 -5.7121 3.0241 14 7 0.3482 -6.5982 2.0730 15 6 0.2842 -7.9330 1.8982 16 8 -0.3959 -8.3970 1.0037 17 6 1.0404 -8.8323 2.7935 18 6 1.0650 -10.2399 2.7250 19 6 1.8794 -10.6942 3.7173 20 7 2.3391 -9.6087 4.3916 21 7 1.8153 -8.4583 3.7925 22 6 3.2082 -10.0831 5.4837 23 6 2.8492 -11.5852 5.5635 24 8 2.3685 -11.8548 4.2337 25 6 -0.2546 -5.4356 1.3906 26 6 2.1313 -4.5941 0.9887 27 6 1.8145 -3.6519 -0.1789 28 1 -0.4850 0.8400 -0.0004 29 1 0.1088 -1.3107 1.6733 30 1 -0.6596 -2.6610 0.7993 31 1 -0.3339 -3.3508 3.1085 32 1 1.3749 -2.8522 3.0604 33 1 2.0738 -6.0169 3.2356 34 1 0.4748 -5.4911 3.9238 35 1 0.5322 -10.8504 2.0111 36 1 2.9674 -9.5769 6.4185 37 1 4.2595 -9.9489 5.2287 38 1 2.0660 -11.7583 6.3017 39 1 3.7303 -12.1867 5.7868 40 1 -1.2161 -5.1325 1.8049 41 1 -0.2656 -5.5207 0.3039 42 1 2.3267 -5.5958 0.6058 43 1 3.0091 -4.2304 1.5226 44 1 1.0206 -4.0813 -0.7900 45 1 2.7086 -3.5085 -0.7856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050548452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:15 Heat of formation + Delta-G solvation = 101.714881 kcal Electronic energy + Delta-G solvation = -28638.846721 eV Core-core repulsion = 24661.833816 eV Total energy + Delta-G solvation = -3977.012905 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.60496 -40.59730 -39.09423 -37.86841 -35.81545 -33.65564 -32.47082 -30.87780 -30.24880 -29.61554 -29.15466 -27.19330 -26.27325 -24.51991 -23.95737 -22.65059 -22.26658 -21.66449 -20.74032 -19.10226 -17.99526 -17.91066 -17.25903 -16.71193 -16.42590 -16.09294 -15.68081 -15.42346 -15.26836 -14.80657 -14.64971 -14.16290 -13.88208 -13.62905 -13.49990 -13.40454 -13.17448 -12.99582 -12.76694 -12.58850 -12.22402 -11.87459 -11.74225 -11.60845 -11.38469 -11.13958 -11.03534 -10.70237 -10.46273 -10.36259 -10.11276 -10.02865 -9.80470 -9.59324 -9.51990 -9.33193 -8.82520 -8.52543 -8.42901 -6.63502 -5.77078 -3.19321 1.10209 1.50517 1.85063 2.36859 2.95765 3.34805 3.39682 3.45570 3.46300 3.46734 4.03226 4.09218 4.34785 4.51371 4.55434 4.66798 4.73213 4.85970 4.94792 5.16156 5.25317 5.28885 5.40838 5.54847 5.59737 5.62582 5.67399 5.72694 5.86738 5.96121 6.10002 6.14406 6.21413 6.31375 6.50366 6.51972 6.60919 6.66487 6.70529 6.85758 6.99719 7.17381 7.35939 7.66884 7.76607 7.81625 8.16577 8.48083 9.23840 9.87409 10.43853 11.31182 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.002455 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.789539 B =11404.627328 C =11883.241230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.126 4.126 12 C -0.076 4.076 13 C 0.111 3.889 14 N -0.624 5.624 15 C 0.617 3.383 16 O -0.530 6.530 17 C 0.064 3.936 18 C -0.214 4.214 19 C 0.231 3.769 20 N -0.416 5.416 21 N -0.211 5.211 22 C 0.098 3.902 23 C 0.042 3.958 24 O -0.279 6.279 25 C 0.121 3.879 26 C -0.108 4.108 27 C 0.147 3.853 28 H 0.254 0.746 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.165 0.835 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.019 0.981 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 -21.129 14.532 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.166 4.166 12 C -0.077 4.077 13 C -0.011 4.011 14 N -0.358 5.358 15 C 0.403 3.597 16 O -0.404 6.404 17 C -0.103 4.103 18 C -0.244 4.244 19 C 0.064 3.936 20 N -0.213 5.213 21 N -0.041 5.041 22 C -0.023 4.023 23 C -0.035 4.035 24 O -0.186 6.186 25 C 0.000 4.000 26 C -0.147 4.147 27 C 0.020 3.980 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.183 0.817 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.148 0.852 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.037 0.963 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.243 -20.619 14.652 25.833 hybrid contribution 0.287 0.066 -0.016 0.295 sum 5.530 -20.553 14.636 25.831 Atomic orbital electron populations 1.70018 1.05231 1.25594 1.53745 1.25021 0.95242 0.98359 1.00946 0.86398 0.78949 0.83488 0.78105 1.20931 1.21683 1.21088 1.19132 0.92739 0.85012 1.41320 0.91851 1.43992 1.37170 1.01361 1.48755 1.20686 0.88840 0.98674 0.87347 1.22054 1.00222 0.94074 1.00230 1.22012 0.95914 0.94575 0.95223 1.23497 0.97827 0.86278 0.93514 1.49939 1.48367 1.03018 1.34483 1.16379 0.80450 0.80001 0.82821 1.90817 1.41780 1.74970 1.32874 1.21971 0.98805 0.93277 0.96245 1.20052 1.07091 0.92877 1.04365 1.20740 0.96565 0.80152 0.96190 1.50759 1.38935 1.04710 1.26870 1.77810 1.13756 1.02225 1.10265 1.23239 0.95201 0.93881 0.89944 1.24456 1.01821 0.93745 0.83437 1.87143 1.75813 1.26535 1.29132 1.23371 0.97280 0.79931 0.99392 1.21761 0.95804 0.99359 0.97766 1.20890 0.97613 0.86844 0.92614 0.93594 0.89261 0.96327 0.92780 0.91957 0.89693 0.89830 0.81727 0.86898 0.87634 0.88795 0.85161 0.89460 0.89583 0.92968 0.91759 0.96282 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.72 11.22 55.49 0.62 -25.10 16 2 C 0.00 0.08 4.89 -17.44 -0.09 -0.01 16 3 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.79 9.56 -15.06 -0.14 -6.94 16 8 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -14.33 2.97 -172.50 -0.51 -14.84 16 10 C 0.17 3.85 5.21 -3.91 -0.02 3.83 16 11 C -0.13 -2.20 5.24 -26.97 -0.14 -2.34 16 12 C -0.08 -1.22 0.77 -154.42 -0.12 -1.34 16 13 C 0.11 1.55 7.01 -3.16 -0.02 1.53 16 14 N -0.62 -9.77 3.44 -181.37 -0.62 -10.39 16 15 C 0.62 10.35 8.06 -12.39 -0.10 10.25 16 16 O -0.53 -10.26 17.63 5.30 0.09 -10.17 16 17 C 0.06 0.95 7.05 -82.96 -0.58 0.37 16 18 C -0.21 -2.85 10.60 -39.30 -0.42 -3.26 16 19 C 0.23 2.64 8.32 -16.54 -0.14 2.50 16 20 N -0.42 -4.51 5.01 -59.64 -0.30 -4.81 16 21 N -0.21 -2.89 11.08 33.32 0.37 -2.52 16 22 C 0.10 0.49 8.10 -2.67 -0.02 0.47 16 23 C 0.04 0.15 8.08 38.02 0.31 0.46 16 24 O -0.28 -2.46 11.19 -20.11 -0.23 -2.69 16 25 C 0.12 1.94 7.62 -3.15 -0.02 1.91 16 26 C -0.11 -1.85 5.21 -26.73 -0.14 -1.99 16 27 C 0.15 3.04 6.38 -3.66 -0.02 3.01 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.09 2.28 5.98 -51.93 -0.31 1.97 16 30 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.17 7.44 -51.93 -0.39 0.78 16 34 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 35 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.13 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 41 H 0.09 1.48 7.41 -51.93 -0.38 1.09 16 42 H 0.05 0.86 8.01 -51.93 -0.42 0.45 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.02 0.41 7.49 -51.92 -0.39 0.02 16 45 H 0.05 1.14 7.92 -51.93 -0.41 0.72 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -33.85 365.27 -8.26 -42.11 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -6.49 Total: -1.94 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -1.67 Total: 8.44 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.44 Total: -57.66 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.13 Total: -12.85 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.85 -8.26 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050548452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.821 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds