Wall clock time and date at job start Tue Mar 31 2020 16:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86806 * 119.99961 * 2 1 4 4 H 1.48494 * 109.47063 * 240.00089 * 3 2 1 5 5 H 1.48507 * 109.47121 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47395 * 119.99971 * 3 2 1 7 7 C 1.38806 * 120.00492 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00359 * 162.51440 * 7 2 1 9 9 N 1.36939 * 119.99809 * 342.23050 * 7 2 1 10 10 C 1.46882 * 120.46551 * 331.56649 * 9 7 2 11 11 C 1.52860 * 109.02035 * 235.48648 * 10 9 7 12 12 C 1.52674 * 109.17092 * 307.81498 * 11 10 9 13 13 C 1.53487 * 113.61971 * 188.98535 * 12 11 10 14 14 N 1.47674 * 85.98586 * 137.71352 * 13 12 11 15 15 C 1.34770 * 134.45659 * 155.70076 * 14 13 12 16 16 O 1.21577 * 120.00285 * 179.97438 * 15 14 13 17 17 C 1.47724 * 120.00274 * 359.97421 * 15 14 13 18 18 C 1.40943 * 125.97589 * 180.02562 * 17 15 14 19 19 C 1.36174 * 107.95066 * 179.77162 * 18 17 15 20 20 N 1.35802 * 107.31141 * 0.53364 * 19 18 17 21 21 N 1.31840 * 125.96942 * 359.68985 * 17 15 14 22 22 C 1.47422 * 108.06927 * 179.18221 * 20 19 18 23 23 C 1.54642 * 102.35059 * 344.68741 * 22 20 19 24 24 O 1.36117 * 140.87764 * 180.69804 * 19 18 17 25 25 C 1.47669 * 91.08411 * 335.68351 * 14 13 12 26 26 C 1.52669 * 113.18366 * 57.46411 * 12 11 10 27 27 C 1.46876 * 120.46786 * 151.83874 * 9 7 2 28 28 H 0.96997 * 120.00262 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.59244 * 355.31226 * 10 9 7 30 30 H 1.09007 * 109.59079 * 115.74279 * 10 9 7 31 31 H 1.09000 * 109.61256 * 187.84268 * 11 10 9 32 32 H 1.08996 * 109.44377 * 67.69407 * 11 10 9 33 33 H 1.09000 * 113.79026 * 251.97701 * 13 12 11 34 34 H 1.08997 * 113.79043 * 23.44880 * 13 12 11 35 35 H 1.08000 * 126.02459 * 359.80205 * 18 17 15 36 36 H 1.08996 * 110.83078 * 226.47353 * 22 20 19 37 37 H 1.09003 * 110.83324 * 102.90287 * 22 20 19 38 38 H 1.09005 * 110.85452 * 266.66588 * 23 22 20 39 39 H 1.09001 * 111.03231 * 143.10861 * 23 22 20 40 40 H 1.08999 * 113.78964 * 270.04512 * 25 14 13 41 41 H 1.09004 * 113.79064 * 138.58007 * 25 14 13 42 42 H 1.09000 * 109.53154 * 182.51600 * 26 12 11 43 43 H 1.09000 * 109.59592 * 62.33084 * 26 12 11 44 44 H 1.09007 * 109.58890 * 244.26090 * 27 9 7 45 45 H 1.08998 * 109.59146 * 4.69340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7466 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0528 -1.2237 -0.2805 9 7 1.3746 -2.3595 0.3630 10 6 0.2471 -2.3268 1.3037 11 6 0.5495 -3.2595 2.4765 12 6 0.9354 -4.6345 1.9369 13 6 1.0490 -5.7121 3.0241 14 7 0.3482 -6.5982 2.0730 15 6 0.2842 -7.9330 1.8982 16 8 -0.3959 -8.3970 1.0037 17 6 1.0404 -8.8323 2.7935 18 6 1.0650 -10.2399 2.7250 19 6 1.8794 -10.6942 3.7173 20 7 2.3391 -9.6087 4.3916 21 7 1.8153 -8.4583 3.7925 22 6 3.2082 -10.0831 5.4837 23 6 2.8492 -11.5852 5.5635 24 8 2.3685 -11.8548 4.2337 25 6 -0.2546 -5.4356 1.3906 26 6 2.1313 -4.5941 0.9887 27 6 1.8145 -3.6519 -0.1789 28 1 -0.4850 0.8400 -0.0004 29 1 0.1088 -1.3107 1.6733 30 1 -0.6596 -2.6610 0.7993 31 1 -0.3339 -3.3508 3.1085 32 1 1.3749 -2.8522 3.0604 33 1 2.0738 -6.0169 3.2356 34 1 0.4748 -5.4911 3.9238 35 1 0.5322 -10.8504 2.0111 36 1 2.9674 -9.5769 6.4185 37 1 4.2595 -9.9489 5.2287 38 1 2.0660 -11.7583 6.3017 39 1 3.7303 -12.1867 5.7868 40 1 -1.2161 -5.1325 1.8049 41 1 -0.2656 -5.5207 0.3039 42 1 2.3267 -5.5958 0.6058 43 1 3.0091 -4.2304 1.5226 44 1 1.0206 -4.0813 -0.7900 45 1 2.7086 -3.5085 -0.7856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050548452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:14 Heat of formation + Delta-G solvation = 77.785522 kcal Electronic energy + Delta-G solvation = -28639.884376 eV Core-core repulsion = 24661.833816 eV Total energy + Delta-G solvation = -3978.050560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.38065 -41.87517 -40.05336 -39.04893 -37.49808 -34.38733 -34.19020 -32.36104 -31.56660 -30.96241 -29.96076 -28.62616 -27.50079 -26.03692 -24.91663 -23.95027 -23.48361 -22.49523 -22.36688 -20.24070 -19.52683 -18.69772 -18.34846 -17.94694 -17.53313 -17.12546 -16.85936 -16.76539 -16.41595 -16.05598 -15.62051 -15.56386 -15.26776 -14.96127 -14.89681 -14.58087 -14.32563 -13.99305 -13.92201 -13.87463 -13.34669 -13.13986 -13.05764 -12.96323 -12.90608 -12.52465 -12.28720 -12.25622 -12.10406 -12.04063 -11.78966 -11.57711 -11.31206 -11.22297 -10.89971 -10.45486 -10.33085 -9.77729 -9.69052 -8.61255 -7.82912 -5.28010 0.10872 0.78935 0.91256 1.50116 1.50315 1.51585 1.58596 2.04358 2.16938 2.54957 2.94859 3.25059 3.29310 3.42260 3.63298 3.73850 3.84576 3.86302 3.97855 4.07008 4.22872 4.24366 4.37896 4.44297 4.47469 4.50440 4.60625 4.61585 4.63491 4.73306 4.74209 4.78716 4.83018 4.95120 5.05000 5.14389 5.19502 5.21913 5.36585 5.37987 5.57340 5.69799 5.77345 5.84533 6.28634 6.44615 6.53319 6.91734 7.20628 7.92006 8.42963 9.22699 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.002455 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.789539 B =11404.627328 C =11883.241230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.048 4.048 3 Si 0.964 3.036 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.607 5.607 10 C 0.175 3.825 11 C -0.110 4.110 12 C -0.075 4.075 13 C 0.129 3.871 14 N -0.624 5.624 15 C 0.615 3.385 16 O -0.568 6.568 17 C 0.045 3.955 18 C -0.241 4.241 19 C 0.241 3.759 20 N -0.410 5.410 21 N -0.222 5.222 22 C 0.087 3.913 23 C 0.040 3.960 24 O -0.290 6.290 25 C 0.118 3.882 26 C -0.094 4.094 27 C 0.145 3.855 28 H 0.250 0.750 29 H 0.056 0.944 30 H -0.001 1.001 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.161 0.839 36 H 0.138 0.862 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.170 0.830 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.010 0.990 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.108 -22.604 17.505 29.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.244 4.244 3 Si 0.792 3.208 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.149 4.149 12 C -0.076 4.076 13 C 0.008 3.992 14 N -0.357 5.357 15 C 0.402 3.598 16 O -0.446 6.446 17 C -0.120 4.120 18 C -0.271 4.271 19 C 0.072 3.928 20 N -0.208 5.208 21 N -0.053 5.053 22 C -0.031 4.031 23 C -0.034 4.034 24 O -0.197 6.197 25 C -0.004 4.004 26 C -0.133 4.133 27 C 0.019 3.981 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.017 0.983 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.179 0.821 36 H 0.155 0.845 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.187 0.813 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.028 0.972 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.213 -22.118 17.666 29.212 hybrid contribution -0.233 0.408 -0.888 1.005 sum 6.981 -21.710 16.778 28.312 Atomic orbital electron populations 1.70171 1.06561 1.25864 1.55236 1.25739 0.95978 1.01308 1.01345 0.85397 0.77608 0.79492 0.78265 1.20493 1.22133 1.20271 1.19442 0.92942 0.86225 1.40636 0.91921 1.44254 1.37377 1.01840 1.49591 1.20531 0.87806 0.98084 0.88599 1.21827 1.01494 0.93388 0.98195 1.21893 0.95312 0.94357 0.96014 1.23471 0.98592 0.84038 0.93100 1.49964 1.48205 1.02839 1.34685 1.16668 0.80142 0.80327 0.82619 1.90781 1.43542 1.75693 1.34593 1.21607 1.00020 0.93392 0.97025 1.20097 1.08657 0.92667 1.05675 1.20661 0.95455 0.81331 0.95349 1.51174 1.38513 1.03713 1.27396 1.77648 1.13825 1.03704 1.10118 1.23833 0.95339 0.94618 0.89359 1.24952 1.03912 0.93312 0.81255 1.87160 1.75443 1.25456 1.31613 1.23380 0.98015 0.80392 0.98572 1.21562 0.96538 0.98568 0.96587 1.20970 0.96950 0.86195 0.93979 0.94117 0.92523 0.98318 0.90051 0.91750 0.88896 0.87459 0.82128 0.84456 0.85771 0.87045 0.81282 0.88166 0.91450 0.92146 0.91290 0.97246 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.63 11.22 21.65 0.24 -54.38 16 2 C -0.05 -2.67 4.89 84.86 0.41 -2.25 16 3 Si 0.96 44.52 29.59 68.60 2.03 46.55 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.26 -14.30 9.56 84.03 0.80 -13.50 16 8 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 9 N -0.61 -29.98 2.97 -699.68 -2.08 -32.05 16 10 C 0.18 8.05 5.21 86.26 0.45 8.50 16 11 C -0.11 -3.68 5.24 30.44 0.16 -3.52 16 12 C -0.07 -2.29 0.77 -52.03 -0.04 -2.33 16 13 C 0.13 3.29 7.01 86.31 0.61 3.89 16 14 N -0.62 -19.00 3.44 -846.01 -2.91 -21.91 16 15 C 0.61 20.72 8.06 86.75 0.70 21.42 16 16 O -0.57 -22.75 17.63 -3.96 -0.07 -22.82 16 17 C 0.04 1.31 7.05 42.31 0.30 1.61 16 18 C -0.24 -6.40 10.60 22.45 0.24 -6.16 16 19 C 0.24 5.10 8.32 83.60 0.70 5.80 16 20 N -0.41 -7.81 5.01 -453.37 -2.27 -10.08 16 21 N -0.22 -5.66 11.08 -48.51 -0.54 -6.20 16 22 C 0.09 0.51 8.10 86.76 0.70 1.22 16 23 C 0.04 0.12 8.08 72.54 0.59 0.70 16 24 O -0.29 -4.31 11.19 -94.88 -1.06 -5.37 16 25 C 0.12 3.72 7.62 86.32 0.66 4.38 16 26 C -0.09 -3.14 5.21 30.60 0.16 -2.98 16 27 C 0.14 6.07 6.38 86.42 0.55 6.62 16 28 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.06 2.97 5.98 -2.39 -0.01 2.96 16 30 H 0.00 -0.06 8.08 -2.38 -0.02 -0.08 16 31 H 0.08 2.31 8.12 -2.39 -0.02 2.29 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 2.28 7.44 -2.39 -0.02 2.26 16 34 H 0.11 2.30 8.09 -2.39 -0.02 2.28 16 35 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 39 H 0.17 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H 0.10 2.90 8.07 -2.39 -0.02 2.88 16 41 H 0.07 2.38 7.41 -2.38 -0.02 2.36 16 42 H 0.06 1.95 8.01 -2.39 -0.02 1.93 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.01 0.42 7.49 -2.38 -0.02 0.40 16 45 H 0.05 2.14 7.92 -2.39 -0.02 2.12 16 Total: -1.00 -76.36 365.27 1.33 -75.03 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.00 Total: 7.85 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 6.98 Total: 23.40 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -7.55 Total: -124.63 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -1.13 Total: -28.20 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -76.36 1.33 -75.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050548452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.817 kcal (2) G-P(sol) polarization free energy of solvation -76.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds