Wall clock time and date at job start Tue Mar 31 2020 17:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38546 * 120.01453 * 2 1 4 4 C 1.40074 * 117.81825 * 180.02562 * 3 2 1 5 5 C 1.48134 * 121.14671 * 180.02562 * 4 3 2 6 6 O 1.21519 * 120.00382 * 126.59634 * 5 4 3 7 7 N 1.34776 * 119.99827 * 306.60410 * 5 4 3 8 8 C 1.47119 * 121.06399 * 354.13148 * 7 5 4 9 9 C 1.53229 * 108.72899 * 232.32545 * 8 7 5 10 10 O 1.43122 * 109.34756 * 305.79638 * 9 8 7 11 11 C 1.42367 * 113.99199 * 59.78594 * 10 9 8 12 12 C 1.52920 * 114.29603 * 74.95129 * 11 10 9 13 13 N 1.47167 * 87.84157 * 88.27800 * 12 11 10 14 14 C 1.36935 * 135.99776 * 206.64107 * 13 12 11 15 15 H 1.08006 * 119.99899 * 5.13211 * 14 13 12 16 16 C 1.38813 * 120.00378 * 185.12612 * 14 13 12 17 17 N 1.31621 * 119.99681 * 5.11579 * 16 14 13 18 18 Si 1.86799 * 120.00208 * 185.11075 * 16 14 13 19 19 H 1.48500 * 109.47159 * 265.00178 * 18 16 14 20 20 H 1.48498 * 109.46872 * 25.00487 * 18 16 14 21 21 H 1.48502 * 109.46794 * 145.00347 * 18 16 14 22 22 C 1.47178 * 88.00673 * 26.89784 * 13 12 11 23 23 C 1.47367 * 121.05903 * 174.15782 * 7 5 4 24 24 C 1.39765 * 117.70818 * 0.27422 * 4 3 2 25 25 C 1.50695 * 120.17480 * 179.71007 * 24 4 3 26 26 N 1.31901 * 119.65379 * 359.44051 * 24 4 3 27 27 N 1.28276 * 122.32718 * 0.58458 * 26 24 4 28 28 H 1.09002 * 109.46587 * 90.00296 * 1 2 3 29 29 H 1.09000 * 109.46813 * 209.99596 * 1 2 3 30 30 H 1.08994 * 109.47152 * 329.99937 * 1 2 3 31 31 H 1.08004 * 121.09241 * 0.05002 * 3 2 1 32 32 H 1.09001 * 109.59941 * 112.55032 * 8 7 5 33 33 H 1.09006 * 109.71755 * 352.17147 * 8 7 5 34 34 H 1.09002 * 109.49104 * 185.83975 * 9 8 7 35 35 H 1.08990 * 109.49397 * 65.76257 * 9 8 7 36 36 H 1.08999 * 113.49862 * 333.53258 * 12 11 10 37 37 H 1.09011 * 113.54417 * 203.02812 * 12 11 10 38 38 H 0.96996 * 120.00293 * 180.02562 * 17 16 14 39 39 H 1.08999 * 113.48723 * 87.84113 * 22 13 12 40 40 H 1.08996 * 113.49050 * 218.35673 * 22 13 12 41 41 H 1.08995 * 109.74452 * 12.08932 * 23 7 5 42 42 H 1.08996 * 109.74672 * 251.36260 * 23 7 5 43 43 H 1.08997 * 109.47587 * 94.84212 * 25 24 4 44 44 H 1.08998 * 109.47260 * 214.84316 * 25 24 4 45 45 H 1.08999 * 109.46886 * 334.84134 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 -0.0006 5 6 4.4140 2.3835 0.0000 6 8 5.2724 2.5457 0.8446 7 7 4.2026 3.3296 -0.9363 8 6 3.2608 3.1045 -2.0439 9 6 3.9766 3.3998 -3.3661 10 8 4.5366 4.7160 -3.3185 11 6 5.4820 4.9053 -2.2710 12 6 6.8421 4.2545 -2.5258 13 7 7.2476 5.4971 -3.2021 14 6 8.1412 5.8389 -4.1819 15 1 8.6945 5.0697 -4.7002 16 6 8.3357 7.1738 -4.5090 17 7 7.7382 8.1162 -3.8109 18 14 9.4456 7.6327 -5.9397 19 1 10.8107 7.9251 -5.4333 20 1 9.5058 6.5030 -6.9016 21 1 8.9025 8.8350 -6.6215 22 6 6.2762 6.2124 -2.3589 23 6 4.9079 4.6224 -0.8836 24 6 4.2017 -0.1154 -0.0070 25 6 5.7037 -0.2378 -0.0145 26 7 3.4483 -1.1980 -0.0011 27 7 2.1668 -1.1420 -0.0005 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6782 2.1453 0.0008 32 1 2.4037 3.7692 -1.9358 33 1 2.9230 2.0681 -2.0345 34 1 3.2630 3.3377 -4.1878 35 1 4.7725 2.6712 -3.5194 36 1 6.7938 3.3931 -3.1920 37 1 7.4054 4.0519 -1.6148 38 1 7.8738 9.0490 -4.0396 39 1 6.6868 6.5364 -1.4026 40 1 5.7488 7.0088 -2.8839 41 1 5.7162 4.5714 -0.1541 42 1 4.2096 5.4119 -0.6060 43 1 6.0637 -0.3567 1.0074 44 1 5.9945 -1.1063 -0.6055 45 1 6.1393 0.6610 -0.4509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053271481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:49 Heat of formation + Delta-G solvation = 56.325374 kcal Electronic energy + Delta-G solvation = -29318.412332 eV Core-core repulsion = 25339.431190 eV Total energy + Delta-G solvation = -3978.981142 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77332 -40.42570 -38.91956 -36.53622 -34.99317 -34.67376 -33.85858 -32.31295 -30.49180 -30.06970 -28.17957 -27.19079 -26.53202 -25.01476 -24.89588 -23.48917 -23.12926 -21.92744 -19.89598 -19.05573 -18.08353 -17.66621 -16.95765 -16.49777 -16.17251 -15.84177 -15.70187 -15.29962 -14.82179 -14.75819 -14.53397 -14.27994 -13.92445 -13.77951 -13.72494 -13.50581 -13.42882 -12.96721 -12.76395 -12.73775 -12.48065 -12.44303 -12.22424 -11.54413 -11.32769 -11.23291 -10.96218 -10.89367 -10.83954 -10.73649 -10.45045 -10.22490 -10.07356 -9.81440 -9.78486 -9.71159 -9.22935 -8.86943 -8.52188 -6.94240 -5.81726 -3.12397 0.09573 0.45921 2.24893 2.55424 3.09992 3.38060 3.42955 3.45337 3.54472 3.81432 3.89526 3.97584 4.07838 4.36668 4.40935 4.65338 4.68460 4.75949 4.86301 4.93908 5.06629 5.07991 5.08941 5.11863 5.24434 5.32237 5.37081 5.39209 5.45995 5.58019 5.62545 5.67726 5.70469 5.73692 5.87115 5.92826 6.10975 6.26845 6.41083 6.43051 6.85167 7.04154 7.06631 7.42474 7.69211 7.75638 7.92097 8.32621 8.99087 9.66020 10.56293 11.37313 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023774 B = 0.002894 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.465080 B = 9673.832706 C = 9971.487722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.059 3.941 3 C -0.085 4.085 4 C -0.116 4.116 5 C 0.565 3.435 6 O -0.515 6.515 7 N -0.600 5.600 8 C 0.069 3.931 9 C 0.046 3.954 10 O -0.330 6.330 11 C 0.043 3.957 12 C 0.100 3.900 13 N -0.598 5.598 14 C -0.217 4.217 15 H 0.081 0.919 16 C -0.006 4.006 17 N -0.920 5.920 18 Si 0.914 3.086 19 H -0.289 1.289 20 H -0.280 1.280 21 H -0.289 1.289 22 C 0.182 3.818 23 C 0.103 3.897 24 C 0.109 3.891 25 C -0.103 4.103 26 N -0.237 5.237 27 N -0.229 5.229 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.255 0.745 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.692 -13.741 7.540 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.085 4.085 3 C -0.114 4.114 4 C -0.130 4.130 5 C 0.351 3.649 6 O -0.391 6.391 7 N -0.333 5.333 8 C -0.054 4.054 9 C -0.032 4.032 10 O -0.247 6.247 11 C 0.001 3.999 12 C -0.026 4.026 13 N -0.324 5.324 14 C -0.344 4.344 15 H 0.099 0.901 16 C -0.202 4.202 17 N -0.566 5.566 18 Si 0.744 3.256 19 H -0.216 1.216 20 H -0.205 1.205 21 H -0.215 1.215 22 C 0.055 3.945 23 C -0.019 4.019 24 C -0.036 4.036 25 C -0.162 4.162 26 N -0.079 5.079 27 N -0.071 5.071 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.174 0.826 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.130 -14.916 7.619 22.571 hybrid contribution 0.647 1.668 -0.525 1.864 sum -14.483 -13.249 7.094 20.871 Atomic orbital electron populations 1.20697 0.86868 1.04311 1.03927 1.22861 0.99317 0.89848 0.96464 1.22504 0.92884 1.00631 0.95403 1.21122 0.94749 0.95579 1.01596 1.17921 0.82973 0.82119 0.81917 1.90838 1.32221 1.78221 1.37802 1.48167 1.43385 1.16249 1.25487 1.22588 0.92840 1.02362 0.87616 1.22869 0.97530 0.87119 0.95665 1.88036 1.57346 1.28284 1.51065 1.23460 0.88381 1.03336 0.84727 1.22879 0.91663 0.92272 0.95832 1.45445 1.44939 1.02594 1.39389 1.18895 1.15325 0.91691 1.08481 0.90089 1.24796 1.00399 0.95348 0.99693 1.69813 1.46745 0.99326 1.40740 0.86074 0.79876 0.77902 0.81736 1.21594 1.20536 1.21530 1.21969 0.86659 0.91376 0.94484 1.22316 0.97812 0.82638 0.99176 1.23034 0.99513 0.88494 0.92547 1.20770 0.86528 1.04320 1.04538 1.73039 0.98965 1.26108 1.09740 1.72821 1.01719 1.24880 1.07724 0.89542 0.89690 0.90073 0.82649 0.89868 0.89726 0.87771 0.92712 0.94153 0.94072 0.93534 0.93480 0.90602 0.87541 0.90163 0.88895 0.89559 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.19 36.01 0.37 -0.14 16 2 C 0.06 0.53 6.86 -82.45 -0.57 -0.04 16 3 C -0.08 -0.74 7.71 -38.78 -0.30 -1.04 16 4 C -0.12 -1.31 4.65 -104.58 -0.49 -1.80 16 5 C 0.57 7.47 6.22 -12.20 -0.08 7.39 16 6 O -0.52 -8.36 15.55 5.35 0.08 -8.27 16 7 N -0.60 -7.56 3.03 -173.48 -0.53 -8.08 16 8 C 0.07 0.70 5.78 -3.59 -0.02 0.68 16 9 C 0.05 0.59 6.90 37.28 0.26 0.85 16 10 O -0.33 -5.94 10.55 -35.23 -0.37 -6.31 16 11 C 0.04 0.79 1.29 -90.67 -0.12 0.67 16 12 C 0.10 2.07 7.90 -8.19 -0.06 2.01 16 13 N -0.60 -15.37 3.77 -184.55 -0.70 -16.07 16 14 C -0.22 -6.11 10.74 -15.06 -0.16 -6.27 16 15 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -27.09 11.73 55.49 0.65 -26.44 16 18 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.18 4.16 6.68 -8.04 -0.05 4.10 16 23 C 0.10 1.51 5.85 -3.68 -0.02 1.49 16 24 C 0.11 1.31 6.91 -81.99 -0.57 0.74 16 25 C -0.10 -1.11 9.53 36.00 0.34 -0.77 16 26 N -0.24 -3.04 11.42 33.81 0.39 -2.65 16 27 N -0.23 -2.71 11.40 33.58 0.38 -2.32 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 31 H 0.16 0.93 7.83 -52.48 -0.41 0.52 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.71 5.52 -51.93 -0.29 0.42 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.74 7.30 -51.93 -0.38 0.36 16 36 H 0.04 0.82 7.36 -51.93 -0.38 0.44 16 37 H 0.04 0.84 7.93 -51.92 -0.41 0.43 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.05 1.07 8.09 -51.93 -0.42 0.64 16 40 H 0.08 1.94 7.49 -51.93 -0.39 1.55 16 41 H 0.11 1.67 6.87 -51.93 -0.36 1.31 16 42 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.97 6.67 -51.93 -0.35 0.63 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -34.57 367.35 -7.45 -42.02 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.31 Total: -2.12 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -1.56 Total: 7.62 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.20 Total: -55.57 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.29 Total: -14.58 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.57 -7.45 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053271481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.346 kcal (2) G-P(sol) polarization free energy of solvation -34.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds