Wall clock time and date at job start Tue Mar 31 2020 17:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38546 * 120.01453 * 2 1 4 4 C 1.40074 * 117.81825 * 180.02562 * 3 2 1 5 5 C 1.48134 * 121.14671 * 180.02562 * 4 3 2 6 6 O 1.21519 * 120.00382 * 126.59634 * 5 4 3 7 7 N 1.34776 * 119.99827 * 306.60410 * 5 4 3 8 8 C 1.47119 * 121.06399 * 354.13148 * 7 5 4 9 9 C 1.53229 * 108.72899 * 232.32545 * 8 7 5 10 10 O 1.43122 * 109.34756 * 305.79638 * 9 8 7 11 11 C 1.42367 * 113.99199 * 59.78594 * 10 9 8 12 12 C 1.52920 * 114.29603 * 74.95129 * 11 10 9 13 13 N 1.47167 * 87.84157 * 88.27800 * 12 11 10 14 14 C 1.36935 * 135.99776 * 206.64107 * 13 12 11 15 15 H 1.08006 * 119.99899 * 5.13211 * 14 13 12 16 16 C 1.38813 * 120.00378 * 185.12612 * 14 13 12 17 17 N 1.31621 * 119.99681 * 5.11579 * 16 14 13 18 18 Si 1.86799 * 120.00208 * 185.11075 * 16 14 13 19 19 H 1.48500 * 109.47159 * 265.00178 * 18 16 14 20 20 H 1.48498 * 109.46872 * 25.00487 * 18 16 14 21 21 H 1.48502 * 109.46794 * 145.00347 * 18 16 14 22 22 C 1.47178 * 88.00673 * 26.89784 * 13 12 11 23 23 C 1.47367 * 121.05903 * 174.15782 * 7 5 4 24 24 C 1.39765 * 117.70818 * 0.27422 * 4 3 2 25 25 C 1.50695 * 120.17480 * 179.71007 * 24 4 3 26 26 N 1.31901 * 119.65379 * 359.44051 * 24 4 3 27 27 N 1.28276 * 122.32718 * 0.58458 * 26 24 4 28 28 H 1.09002 * 109.46587 * 90.00296 * 1 2 3 29 29 H 1.09000 * 109.46813 * 209.99596 * 1 2 3 30 30 H 1.08994 * 109.47152 * 329.99937 * 1 2 3 31 31 H 1.08004 * 121.09241 * 0.05002 * 3 2 1 32 32 H 1.09001 * 109.59941 * 112.55032 * 8 7 5 33 33 H 1.09006 * 109.71755 * 352.17147 * 8 7 5 34 34 H 1.09002 * 109.49104 * 185.83975 * 9 8 7 35 35 H 1.08990 * 109.49397 * 65.76257 * 9 8 7 36 36 H 1.08999 * 113.49862 * 333.53258 * 12 11 10 37 37 H 1.09011 * 113.54417 * 203.02812 * 12 11 10 38 38 H 0.96996 * 120.00293 * 180.02562 * 17 16 14 39 39 H 1.08999 * 113.48723 * 87.84113 * 22 13 12 40 40 H 1.08996 * 113.49050 * 218.35673 * 22 13 12 41 41 H 1.08995 * 109.74452 * 12.08932 * 23 7 5 42 42 H 1.08996 * 109.74672 * 251.36260 * 23 7 5 43 43 H 1.08997 * 109.47587 * 94.84212 * 25 24 4 44 44 H 1.08998 * 109.47260 * 214.84316 * 25 24 4 45 45 H 1.08999 * 109.46886 * 334.84134 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 -0.0006 5 6 4.4140 2.3835 0.0000 6 8 5.2724 2.5457 0.8446 7 7 4.2026 3.3296 -0.9363 8 6 3.2608 3.1045 -2.0439 9 6 3.9766 3.3998 -3.3661 10 8 4.5366 4.7160 -3.3185 11 6 5.4820 4.9053 -2.2710 12 6 6.8421 4.2545 -2.5258 13 7 7.2476 5.4971 -3.2021 14 6 8.1412 5.8389 -4.1819 15 1 8.6945 5.0697 -4.7002 16 6 8.3357 7.1738 -4.5090 17 7 7.7382 8.1162 -3.8109 18 14 9.4456 7.6327 -5.9397 19 1 10.8107 7.9251 -5.4333 20 1 9.5058 6.5030 -6.9016 21 1 8.9025 8.8350 -6.6215 22 6 6.2762 6.2124 -2.3589 23 6 4.9079 4.6224 -0.8836 24 6 4.2017 -0.1154 -0.0070 25 6 5.7037 -0.2378 -0.0145 26 7 3.4483 -1.1980 -0.0011 27 7 2.1668 -1.1420 -0.0005 28 1 -0.3632 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6782 2.1453 0.0008 32 1 2.4037 3.7692 -1.9358 33 1 2.9230 2.0681 -2.0345 34 1 3.2630 3.3377 -4.1878 35 1 4.7725 2.6712 -3.5194 36 1 6.7938 3.3931 -3.1920 37 1 7.4054 4.0519 -1.6148 38 1 7.8738 9.0490 -4.0396 39 1 6.6868 6.5364 -1.4026 40 1 5.7488 7.0088 -2.8839 41 1 5.7162 4.5714 -0.1541 42 1 4.2096 5.4119 -0.6060 43 1 6.0637 -0.3567 1.0074 44 1 5.9945 -1.1063 -0.6055 45 1 6.1393 0.6610 -0.4509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053271481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:48 Heat of formation + Delta-G solvation = 31.391358 kcal Electronic energy + Delta-G solvation = -29319.493552 eV Core-core repulsion = 25339.431190 eV Total energy + Delta-G solvation = -3980.062362 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.63793 -41.64207 -40.17757 -37.95947 -36.03811 -35.55623 -34.74305 -34.26933 -31.69039 -30.93922 -29.52970 -28.18919 -27.80591 -26.72815 -25.82697 -24.76846 -24.04305 -23.39203 -21.08461 -20.34792 -18.91892 -18.82858 -18.64190 -17.74486 -17.14166 -17.08821 -16.81612 -16.49368 -16.22844 -15.91712 -15.78035 -15.49735 -15.14963 -15.05518 -14.68882 -14.45066 -14.41058 -14.15964 -14.02248 -13.51939 -13.46658 -13.34315 -13.19302 -13.11088 -12.91013 -12.78701 -12.54647 -12.19593 -12.12382 -11.98793 -11.79975 -11.66742 -11.43192 -11.19158 -10.99507 -10.78146 -10.66234 -10.56777 -9.70670 -8.98096 -7.95693 -5.27782 -0.70847 -0.28183 1.24925 1.44294 1.46335 1.55586 1.55739 2.30370 2.44063 2.59778 2.81123 2.94794 3.20989 3.26640 3.30581 3.37814 3.46744 3.69513 3.73895 3.87795 3.99398 4.01982 4.19768 4.22298 4.32981 4.36184 4.51564 4.53964 4.60046 4.63092 4.70802 4.72978 4.77268 4.78729 4.81398 4.85668 5.04295 5.06458 5.11297 5.13418 5.14622 5.31595 5.42062 5.85432 6.04166 6.32430 6.74291 6.86143 7.53717 7.54406 8.52831 9.23206 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023774 B = 0.002894 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.465080 B = 9673.832706 C = 9971.487722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.066 3.934 3 C -0.066 4.066 4 C -0.129 4.129 5 C 0.571 3.429 6 O -0.551 6.551 7 N -0.597 5.597 8 C 0.074 3.926 9 C 0.038 3.962 10 O -0.358 6.358 11 C 0.077 3.923 12 C 0.100 3.900 13 N -0.631 5.631 14 C -0.233 4.233 15 H 0.081 0.919 16 C -0.062 4.062 17 N -0.950 5.950 18 Si 0.981 3.019 19 H -0.285 1.285 20 H -0.269 1.269 21 H -0.290 1.290 22 C 0.177 3.823 23 C 0.114 3.886 24 C 0.097 3.903 25 C -0.101 4.101 26 N -0.262 5.262 27 N -0.256 5.256 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.192 0.808 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.251 0.749 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.366 -14.599 7.350 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.079 4.079 3 C -0.096 4.096 4 C -0.143 4.143 5 C 0.358 3.642 6 O -0.429 6.429 7 N -0.330 5.330 8 C -0.048 4.048 9 C -0.039 4.039 10 O -0.277 6.277 11 C 0.035 3.965 12 C -0.026 4.026 13 N -0.357 5.357 14 C -0.361 4.361 15 H 0.099 0.901 16 C -0.256 4.256 17 N -0.598 5.598 18 Si 0.809 3.191 19 H -0.212 1.212 20 H -0.194 1.194 21 H -0.217 1.217 22 C 0.051 3.949 23 C -0.009 4.009 24 C -0.048 4.048 25 C -0.159 4.159 26 N -0.103 5.103 27 N -0.098 5.098 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.126 0.874 31 H 0.209 0.791 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.152 0.848 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.833 -15.837 7.428 24.980 hybrid contribution 1.387 1.860 -0.473 2.368 sum -16.445 -13.977 6.955 22.676 Atomic orbital electron populations 1.20884 0.83831 1.05587 1.05404 1.23475 1.01072 0.88944 0.94420 1.22901 0.91588 1.02106 0.92963 1.20967 0.95826 0.94129 1.03395 1.18123 0.82454 0.82342 0.81282 1.90824 1.33844 1.78920 1.39334 1.48157 1.43426 1.15266 1.26115 1.22755 0.92532 1.04569 0.84900 1.23211 0.97859 0.84256 0.98539 1.87982 1.57062 1.31395 1.51211 1.22846 0.87753 0.98909 0.86961 1.22997 0.93311 0.90914 0.95339 1.45797 1.45026 1.05084 1.39758 1.19259 1.15527 0.92048 1.09267 0.90116 1.25646 1.02226 0.95287 1.02412 1.69988 1.48281 0.99261 1.42312 0.85029 0.77849 0.77526 0.78700 1.21235 1.19363 1.21661 1.21913 0.87078 0.92619 0.93322 1.22023 0.98314 0.84567 0.96040 1.23107 0.99723 0.88878 0.93124 1.20726 0.86490 1.04036 1.04618 1.72998 0.99723 1.26628 1.10923 1.72752 1.01451 1.26728 1.08826 0.87746 0.89815 0.87443 0.79096 0.86781 0.87385 0.84785 0.93913 0.93973 0.93763 0.94001 0.93858 0.93974 0.88648 0.87930 0.88920 0.88569 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.19 71.24 0.73 0.17 16 2 C 0.07 0.94 6.86 42.62 0.29 1.24 16 3 C -0.07 -0.89 7.71 22.79 0.18 -0.71 16 4 C -0.13 -2.64 4.65 -19.83 -0.09 -2.73 16 5 C 0.57 14.09 6.22 86.87 0.54 14.63 16 6 O -0.55 -17.63 15.55 -3.78 -0.06 -17.68 16 7 N -0.60 -13.57 3.03 -821.07 -2.49 -16.06 16 8 C 0.07 1.20 5.78 86.34 0.50 1.70 16 9 C 0.04 0.87 6.90 72.06 0.50 1.37 16 10 O -0.36 -12.49 10.55 -148.98 -1.57 -14.06 16 11 C 0.08 2.81 1.29 -10.82 -0.01 2.80 16 12 C 0.10 4.21 7.90 83.33 0.66 4.87 16 13 N -0.63 -33.32 3.77 -738.68 -2.79 -36.10 16 14 C -0.23 -13.45 10.74 84.03 0.90 -12.55 16 15 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 16 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 17 N -0.95 -57.64 11.73 21.65 0.25 -57.39 16 18 Si 0.98 46.19 29.56 68.60 2.03 48.22 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 22 C 0.18 8.36 6.68 83.42 0.56 8.92 16 23 C 0.11 3.19 5.85 86.14 0.50 3.69 16 24 C 0.10 2.25 6.91 42.92 0.30 2.54 16 25 C -0.10 -2.18 9.53 71.23 0.68 -1.50 16 26 N -0.26 -6.49 11.42 -46.94 -0.54 -7.02 16 27 N -0.26 -5.59 11.40 -47.68 -0.54 -6.13 16 28 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.11 0.09 8.09 -2.39 -0.02 0.08 16 31 H 0.19 1.15 7.83 -2.91 -0.02 1.12 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.11 1.31 5.52 -2.38 -0.01 1.30 16 34 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.04 1.08 7.30 -2.39 -0.02 1.07 16 36 H 0.04 1.73 7.36 -2.39 -0.02 1.71 16 37 H 0.04 1.85 7.93 -2.38 -0.02 1.83 16 38 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 39 H 0.04 2.05 8.09 -2.39 -0.02 2.03 16 40 H 0.04 2.25 7.49 -2.39 -0.02 2.23 16 41 H 0.10 2.95 6.87 -2.39 -0.02 2.93 16 42 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 44 H 0.10 1.80 8.14 -2.39 -0.02 1.79 16 45 H 0.07 1.67 6.67 -2.39 -0.02 1.65 16 Total: -1.00 -78.77 367.35 2.00 -76.77 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.01 Total: 8.15 kcal Atomic # 6 Polarization: 14.62 SS G_CDS: 6.69 Total: 21.31 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -6.10 Total: -122.70 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.63 Total: -31.74 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -78.77 2.00 -76.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053271481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.159 kcal (2) G-P(sol) polarization free energy of solvation -78.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds