Wall clock time and date at job start Tue Mar 31 2020 16:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00044 * 2 1 4 4 H 1.48497 * 109.46762 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46962 * 299.99665 * 3 2 1 6 6 H 1.48497 * 109.47061 * 59.99832 * 3 2 1 7 7 C 1.38815 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99922 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.47673 * 134.45515 * 180.02562 * 9 7 2 11 11 C 1.53472 * 85.96809 * 204.31693 * 10 9 7 12 12 C 1.47680 * 134.45658 * 0.04107 * 9 7 2 13 13 C 1.52889 * 113.50062 * 222.31067 * 11 10 9 14 14 N 1.47339 * 108.04538 * 277.02080 * 13 11 10 15 15 C 1.34783 * 121.05222 * 131.59222 * 14 13 11 16 16 O 1.21283 * 119.99858 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99866 * 180.02562 * 15 14 13 18 18 H 1.08997 * 115.55129 * 34.33824 * 17 15 14 19 19 C 1.52998 * 117.50073 * 248.62000 * 17 15 14 20 20 C 1.53004 * 60.00277 * 252.51271 * 19 17 15 21 21 H 1.09007 * 117.51937 * 107.47450 * 20 19 17 22 22 C 1.50697 * 117.50177 * 252.51047 * 20 19 17 23 23 C 1.34675 * 126.58842 * 33.30201 * 22 20 19 24 24 N 1.34124 * 108.01857 * 179.87384 * 23 22 20 25 25 C 1.30508 * 109.25760 * 0.40467 * 24 23 22 26 26 N 1.35043 * 108.69510 * 359.74990 * 25 24 23 27 27 H 0.97004 * 126.39199 * 179.97438 * 26 25 24 28 28 C 1.47124 * 117.89928 * 311.61155 * 14 13 11 29 29 C 1.53233 * 108.72883 * 52.21064 * 28 14 13 30 30 O 1.42495 * 113.75597 * 91.29214 * 11 10 9 31 31 H 0.97007 * 120.00016 * 0.02562 * 1 2 3 32 32 H 1.09004 * 113.78840 * 90.05625 * 10 9 7 33 33 H 1.08997 * 113.78940 * 318.58537 * 10 9 7 34 34 H 1.09001 * 113.78697 * 41.41779 * 12 9 7 35 35 H 1.08997 * 113.79190 * 269.94550 * 12 9 7 36 36 H 1.09002 * 109.74727 * 36.65988 * 13 11 10 37 37 H 1.08997 * 109.74247 * 157.38684 * 13 11 10 38 38 H 1.09002 * 117.49584 * 359.97438 * 19 17 15 39 39 H 1.09002 * 117.50167 * 145.02542 * 19 17 15 40 40 H 1.08002 * 125.98808 * 0.03085 * 23 22 20 41 41 H 1.07997 * 125.64845 * 179.77264 * 25 24 23 42 42 H 1.09004 * 109.58817 * 292.44111 * 28 14 13 43 43 H 1.08993 * 109.71942 * 172.06294 * 28 14 13 44 44 H 1.08995 * 109.48718 * 185.91844 * 29 28 14 45 45 H 1.08998 * 109.49100 * 65.84117 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7211 -3.8108 0.0015 11 6 0.3486 -4.0810 -0.6299 12 6 -0.1046 -2.7567 -0.0007 13 6 -0.3585 -5.3063 -0.0502 14 7 0.1639 -6.5015 -0.7354 15 6 0.5669 -7.5822 -0.0381 16 8 0.5020 -7.5812 1.1730 17 6 1.0980 -8.7918 -0.7633 18 1 1.6617 -8.5846 -1.6729 19 6 0.2481 -10.0636 -0.7324 20 6 1.5394 -9.9865 0.0847 21 1 1.4459 -9.8973 1.1671 22 6 2.7197 -10.7870 -0.4020 23 6 3.0361 -11.0523 -1.6839 24 7 4.1569 -11.7890 -1.6907 25 6 4.5423 -11.9976 -0.4614 26 7 3.6729 -11.3893 0.3740 27 1 3.7158 -11.3811 1.3430 28 6 0.2324 -6.4778 -2.2049 29 6 0.9814 -5.2146 -2.6423 30 8 0.3595 -4.0674 -2.0547 31 1 -0.4850 0.8401 -0.0004 32 1 1.8372 -4.2343 0.9992 33 1 2.5601 -4.0343 -0.6575 34 1 -0.7164 -2.1425 -0.6615 35 1 -0.5312 -2.8668 0.9963 36 1 -0.1566 -5.3768 1.0186 37 1 -1.4324 -5.2254 -0.2183 38 1 -0.6950 -10.0256 -0.1873 39 1 0.2523 -10.6935 -1.6220 40 1 2.4854 -10.7266 -2.5540 41 1 5.4126 -12.5627 -0.1619 42 1 -0.7765 -6.4659 -2.6176 43 1 0.7633 -7.3599 -2.5626 44 1 0.9483 -5.1300 -3.7284 45 1 2.0188 -5.2745 -2.3131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053292044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:29 Heat of formation + Delta-G solvation = 84.327646 kcal Electronic energy + Delta-G solvation = -28630.486385 eV Core-core repulsion = 24652.719513 eV Total energy + Delta-G solvation = -3977.766872 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.41220 -40.58885 -39.14957 -36.80816 -36.23842 -34.50578 -32.82183 -32.24459 -30.18490 -29.60013 -28.04128 -26.53248 -25.10543 -24.08569 -23.58347 -23.33567 -21.94414 -21.62719 -20.69402 -19.12966 -18.77687 -18.53962 -17.26702 -16.82766 -16.29214 -15.83668 -15.41302 -15.27410 -14.86201 -14.78802 -14.63102 -14.42598 -14.26197 -13.97838 -13.82041 -13.48334 -13.36902 -12.89680 -12.62030 -12.34194 -12.28766 -12.02089 -11.39716 -11.29659 -11.16486 -10.99985 -10.85111 -10.83525 -10.74600 -10.33120 -10.30808 -10.19668 -10.05358 -9.67676 -9.63603 -9.29726 -8.82570 -8.59317 -8.33012 -6.87527 -5.75012 -3.06793 1.56469 2.38824 2.64583 2.79894 2.92266 3.40918 3.45795 3.48582 3.64418 4.03703 4.08934 4.34434 4.37039 4.45352 4.47137 4.67619 4.74105 4.84634 4.95648 5.02929 5.07477 5.16360 5.17158 5.21413 5.31656 5.39256 5.52118 5.58358 5.61859 5.69130 5.75488 5.85176 5.95430 6.02582 6.28357 6.34557 6.36261 6.48401 6.57346 6.95243 7.00794 7.18732 7.33780 7.51270 7.71524 7.81039 7.99480 8.09501 9.05578 9.71995 10.58143 11.42605 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.002555 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.908663 B =10954.248171 C =11389.248074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.220 4.220 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.101 3.899 11 C 0.053 3.947 12 C 0.182 3.818 13 C 0.098 3.902 14 N -0.604 5.604 15 C 0.545 3.455 16 O -0.542 6.542 17 C -0.173 4.173 18 H 0.130 0.870 19 C -0.130 4.130 20 C -0.057 4.057 21 H 0.125 0.875 22 C 0.012 3.988 23 C -0.023 4.023 24 N -0.493 5.493 25 C 0.184 3.816 26 N -0.564 5.564 27 H 0.421 0.579 28 C 0.073 3.927 29 C 0.043 3.957 30 O -0.335 6.335 31 H 0.254 0.746 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.168 0.832 41 H 0.209 0.791 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 -24.742 -2.839 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.347 4.347 8 H 0.098 0.902 9 N -0.328 5.328 10 C -0.025 4.025 11 C 0.011 3.989 12 C 0.057 3.943 13 C -0.024 4.024 14 N -0.337 5.337 15 C 0.333 3.667 16 O -0.420 6.420 17 C -0.194 4.194 18 H 0.148 0.852 19 C -0.168 4.168 20 C -0.077 4.077 21 H 0.143 0.857 22 C -0.104 4.104 23 C -0.171 4.171 24 N -0.211 5.211 25 C -0.100 4.100 26 N -0.167 5.167 27 H 0.259 0.741 28 C -0.051 4.051 29 C -0.035 4.035 30 O -0.252 6.252 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.186 0.814 41 H 0.226 0.774 42 H 0.097 0.903 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.635 -24.504 -3.062 24.748 hybrid contribution 0.373 1.030 1.315 1.712 sum 2.008 -23.473 -1.747 23.624 Atomic orbital electron populations 1.69806 1.04991 1.25272 1.56735 1.24767 0.95697 0.97483 1.02425 0.86032 0.78698 0.83686 0.77252 1.20521 1.21652 1.21746 1.19019 0.90217 0.81757 1.43720 0.90233 1.45760 1.01883 0.99100 1.86065 1.23045 0.95049 0.87260 0.97137 1.23778 0.97812 0.95673 0.81643 1.22212 0.88952 0.86662 0.96521 1.22337 0.98343 0.82882 0.98879 1.48116 1.63194 1.15313 1.07073 1.19495 0.77178 0.82982 0.87025 1.90694 1.55689 1.81847 1.13733 1.22420 1.05759 0.88866 1.02376 0.85185 1.23147 0.94664 0.96613 1.02354 1.20132 0.91690 0.96818 0.99025 0.85680 1.20306 0.94573 1.03786 0.91686 1.22032 0.96771 1.03035 0.95271 1.70298 1.12645 1.17323 1.20860 1.24997 0.97833 1.01865 0.85277 1.43203 1.21689 1.41224 1.10552 0.74091 1.22496 1.02365 1.00159 0.80031 1.22903 0.96291 0.85446 0.98856 1.88059 1.78737 1.40395 1.18026 0.93637 0.94177 0.93822 0.89606 0.93832 0.88022 0.90698 0.87381 0.87035 0.81443 0.77441 0.90276 0.89003 0.87953 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.58 11.39 55.49 0.63 -26.95 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 8 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 9 N -0.60 -15.90 3.70 -180.28 -0.67 -16.57 16 10 C 0.10 2.19 8.08 -3.16 -0.03 2.17 16 11 C 0.05 1.02 1.21 -90.29 -0.11 0.91 16 12 C 0.18 4.34 6.90 -3.17 -0.02 4.32 16 13 C 0.10 1.58 5.78 -3.64 -0.02 1.55 16 14 N -0.60 -8.10 3.03 -172.43 -0.52 -8.62 16 15 C 0.55 7.27 7.50 -10.98 -0.08 7.18 16 16 O -0.54 -9.09 15.75 5.55 0.09 -9.00 16 17 C -0.17 -1.60 4.69 -91.77 -0.43 -2.03 16 18 H 0.13 1.02 6.42 -51.93 -0.33 0.69 16 19 C -0.13 -0.93 9.75 -26.73 -0.26 -1.19 16 20 C -0.06 -0.49 5.84 -91.77 -0.54 -1.03 16 21 H 0.13 1.21 7.67 -51.93 -0.40 0.81 16 22 C 0.01 0.11 6.92 -81.60 -0.56 -0.46 16 23 C -0.02 -0.22 10.94 -17.81 -0.19 -0.42 16 24 N -0.49 -5.32 11.25 -14.66 -0.16 -5.49 16 25 C 0.18 1.41 13.04 -90.37 -1.18 0.23 16 26 N -0.56 -3.99 6.15 -10.30 -0.06 -4.05 16 27 H 0.42 1.79 8.96 -40.82 -0.37 1.42 16 28 C 0.07 0.77 6.50 -3.58 -0.02 0.74 16 29 C 0.04 0.57 6.88 37.28 0.26 0.83 16 30 O -0.33 -6.35 10.52 -35.23 -0.37 -6.72 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.04 0.86 7.94 -51.93 -0.41 0.45 16 33 H 0.04 0.93 7.27 -51.93 -0.38 0.55 16 34 H 0.09 2.28 7.17 -51.93 -0.37 1.91 16 35 H 0.04 1.02 8.09 -51.93 -0.42 0.60 16 36 H 0.10 1.75 6.91 -51.93 -0.36 1.39 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.11 0.59 7.94 -51.93 -0.41 0.18 16 40 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.68 5.59 -51.93 -0.29 0.39 16 44 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.75 7.19 -51.93 -0.37 0.37 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -37.12 368.89 -10.18 -47.30 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.20 Total: 1.03 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: -3.45 Total: 6.02 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -0.79 Total: -61.68 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.28 Total: -15.72 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.12 -10.18 -47.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053292044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.628 kcal (2) G-P(sol) polarization free energy of solvation -37.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds