Wall clock time and date at job start Tue Mar 31 2020 16:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00044 * 2 1 4 4 H 1.48497 * 109.46762 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46962 * 299.99665 * 3 2 1 6 6 H 1.48497 * 109.47061 * 59.99832 * 3 2 1 7 7 C 1.38815 * 119.99725 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99922 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.47673 * 134.45515 * 180.02562 * 9 7 2 11 11 C 1.53472 * 85.96809 * 204.31693 * 10 9 7 12 12 C 1.47680 * 134.45658 * 0.04107 * 9 7 2 13 13 C 1.52889 * 113.50062 * 222.31067 * 11 10 9 14 14 N 1.47339 * 108.04538 * 277.02080 * 13 11 10 15 15 C 1.34783 * 121.05222 * 131.59222 * 14 13 11 16 16 O 1.21283 * 119.99858 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99866 * 180.02562 * 15 14 13 18 18 H 1.08997 * 115.55129 * 34.33824 * 17 15 14 19 19 C 1.52998 * 117.50073 * 248.62000 * 17 15 14 20 20 C 1.53004 * 60.00277 * 252.51271 * 19 17 15 21 21 H 1.09007 * 117.51937 * 107.47450 * 20 19 17 22 22 C 1.50697 * 117.50177 * 252.51047 * 20 19 17 23 23 C 1.34675 * 126.58842 * 33.30201 * 22 20 19 24 24 N 1.34124 * 108.01857 * 179.87384 * 23 22 20 25 25 C 1.30508 * 109.25760 * 0.40467 * 24 23 22 26 26 N 1.35043 * 108.69510 * 359.74990 * 25 24 23 27 27 H 0.97004 * 126.39199 * 179.97438 * 26 25 24 28 28 C 1.47124 * 117.89928 * 311.61155 * 14 13 11 29 29 C 1.53233 * 108.72883 * 52.21064 * 28 14 13 30 30 O 1.42495 * 113.75597 * 91.29214 * 11 10 9 31 31 H 0.97007 * 120.00016 * 0.02562 * 1 2 3 32 32 H 1.09004 * 113.78840 * 90.05625 * 10 9 7 33 33 H 1.08997 * 113.78940 * 318.58537 * 10 9 7 34 34 H 1.09001 * 113.78697 * 41.41779 * 12 9 7 35 35 H 1.08997 * 113.79190 * 269.94550 * 12 9 7 36 36 H 1.09002 * 109.74727 * 36.65988 * 13 11 10 37 37 H 1.08997 * 109.74247 * 157.38684 * 13 11 10 38 38 H 1.09002 * 117.49584 * 359.97438 * 19 17 15 39 39 H 1.09002 * 117.50167 * 145.02542 * 19 17 15 40 40 H 1.08002 * 125.98808 * 0.03085 * 23 22 20 41 41 H 1.07997 * 125.64845 * 179.77264 * 25 24 23 42 42 H 1.09004 * 109.58817 * 292.44111 * 28 14 13 43 43 H 1.08993 * 109.71942 * 172.06294 * 28 14 13 44 44 H 1.08995 * 109.48718 * 185.91844 * 29 28 14 45 45 H 1.08998 * 109.49100 * 65.84117 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7211 -3.8108 0.0015 11 6 0.3486 -4.0810 -0.6299 12 6 -0.1046 -2.7567 -0.0007 13 6 -0.3585 -5.3063 -0.0502 14 7 0.1639 -6.5015 -0.7354 15 6 0.5669 -7.5822 -0.0381 16 8 0.5020 -7.5812 1.1730 17 6 1.0980 -8.7918 -0.7633 18 1 1.6617 -8.5846 -1.6729 19 6 0.2481 -10.0636 -0.7324 20 6 1.5394 -9.9865 0.0847 21 1 1.4459 -9.8973 1.1671 22 6 2.7197 -10.7870 -0.4020 23 6 3.0361 -11.0523 -1.6839 24 7 4.1569 -11.7890 -1.6907 25 6 4.5423 -11.9976 -0.4614 26 7 3.6729 -11.3893 0.3740 27 1 3.7158 -11.3811 1.3430 28 6 0.2324 -6.4778 -2.2049 29 6 0.9814 -5.2146 -2.6423 30 8 0.3595 -4.0674 -2.0547 31 1 -0.4850 0.8401 -0.0004 32 1 1.8372 -4.2343 0.9992 33 1 2.5601 -4.0343 -0.6575 34 1 -0.7164 -2.1425 -0.6615 35 1 -0.5312 -2.8668 0.9963 36 1 -0.1566 -5.3768 1.0186 37 1 -1.4324 -5.2254 -0.2183 38 1 -0.6950 -10.0256 -0.1873 39 1 0.2523 -10.6935 -1.6220 40 1 2.4854 -10.7266 -2.5540 41 1 5.4126 -12.5627 -0.1619 42 1 -0.7765 -6.4659 -2.6176 43 1 0.7633 -7.3599 -2.5626 44 1 0.9483 -5.1300 -3.7284 45 1 2.0188 -5.2745 -2.3131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053292044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:28 Heat of formation + Delta-G solvation = 58.533335 kcal Electronic energy + Delta-G solvation = -28631.604910 eV Core-core repulsion = 24652.719513 eV Total energy + Delta-G solvation = -3978.885398 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.00646 -41.80013 -40.42672 -37.89859 -37.47934 -35.75990 -34.28556 -33.42196 -31.62121 -30.27891 -29.39979 -28.15487 -26.91080 -25.19012 -24.56688 -24.24004 -23.20039 -22.53404 -21.34310 -20.53127 -19.85292 -19.21508 -18.83808 -18.15155 -17.58403 -17.10077 -16.94424 -16.34465 -15.92860 -15.87651 -15.75463 -15.50976 -15.37938 -15.05080 -14.94522 -14.82024 -14.39712 -14.23217 -13.96480 -13.65732 -13.38714 -13.05091 -12.93147 -12.88115 -12.80402 -12.45753 -12.11865 -11.93387 -11.92044 -11.75155 -11.69557 -11.47018 -11.03139 -10.97703 -10.92077 -10.81783 -10.79188 -9.56553 -9.20393 -8.97132 -7.93550 -5.27649 0.95673 1.43219 1.44978 1.45936 1.55284 1.77095 2.18482 2.25121 2.43676 2.68285 2.95440 3.21473 3.30221 3.34533 3.54066 3.66598 3.72316 3.80600 3.93025 4.01384 4.06489 4.11227 4.17089 4.30195 4.41915 4.50308 4.52378 4.61510 4.64251 4.68920 4.71203 4.78762 4.87719 4.90336 4.96680 5.06833 5.12877 5.19001 5.30152 5.34560 5.44649 5.77123 5.87482 6.31567 6.38996 6.53793 6.87372 7.06560 7.12951 7.55327 8.48633 9.23646 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.002555 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.908663 B =10954.248171 C =11389.248074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.632 5.632 10 C 0.103 3.897 11 C 0.085 3.915 12 C 0.176 3.824 13 C 0.109 3.891 14 N -0.606 5.606 15 C 0.542 3.458 16 O -0.584 6.584 17 C -0.175 4.175 18 H 0.151 0.849 19 C -0.106 4.106 20 C -0.060 4.060 21 H 0.111 0.889 22 C 0.004 3.996 23 C -0.037 4.037 24 N -0.536 5.536 25 C 0.189 3.811 26 N -0.560 5.560 27 H 0.433 0.567 28 C 0.077 3.923 29 C 0.034 3.966 30 O -0.366 6.366 31 H 0.251 0.749 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.183 0.817 41 H 0.242 0.758 42 H 0.096 0.904 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -26.976 -4.157 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.810 3.190 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.366 4.366 8 H 0.098 0.902 9 N -0.359 5.359 10 C -0.022 4.022 11 C 0.043 3.957 12 C 0.050 3.950 13 C -0.015 4.015 14 N -0.338 5.338 15 C 0.332 3.668 16 O -0.464 6.464 17 C -0.196 4.196 18 H 0.169 0.831 19 C -0.143 4.143 20 C -0.080 4.080 21 H 0.129 0.871 22 C -0.112 4.112 23 C -0.184 4.184 24 N -0.255 5.255 25 C -0.095 4.095 26 N -0.164 5.164 27 H 0.273 0.727 28 C -0.045 4.045 29 C -0.043 4.043 30 O -0.284 6.284 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.125 0.875 39 H 0.156 0.844 40 H 0.200 0.800 41 H 0.258 0.742 42 H 0.115 0.885 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.377 -26.783 -4.392 27.244 hybrid contribution 0.199 1.652 1.725 2.397 sum 2.576 -25.130 -2.667 25.402 Atomic orbital electron populations 1.69998 1.06419 1.25754 1.57807 1.25651 0.96664 1.00876 1.02581 0.84963 0.78027 0.79099 0.76911 1.19145 1.21551 1.21634 1.19389 0.90659 0.83244 1.43321 0.90220 1.46130 1.03228 1.00246 1.86248 1.23139 0.96758 0.84883 0.97467 1.23118 0.95538 0.94713 0.82289 1.22114 0.87607 0.89063 0.96181 1.21961 0.98683 0.82864 0.98012 1.48186 1.62946 1.14343 1.08325 1.20196 0.76164 0.83738 0.86706 1.90678 1.57269 1.82682 1.15777 1.22377 1.07075 0.87488 1.02704 0.83134 1.23271 0.93714 0.94676 1.02652 1.20059 0.92836 0.96695 0.98403 0.87095 1.20314 0.94925 1.04165 0.91790 1.22348 0.96851 1.03128 0.96066 1.70292 1.13774 1.18894 1.22565 1.25685 0.98166 1.00948 0.84678 1.43258 1.21182 1.40680 1.11269 0.72714 1.22693 1.03608 1.00150 0.78016 1.23289 0.95868 0.84895 1.00242 1.87998 1.79490 1.43692 1.17239 0.94037 0.94012 0.93432 0.93006 0.94267 0.89540 0.89376 0.87479 0.84401 0.80040 0.74164 0.88546 0.84947 0.84970 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.85 11.39 21.65 0.25 -58.60 16 2 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.24 -14.05 10.70 84.03 0.90 -13.15 16 8 H 0.08 4.54 7.83 -2.92 -0.02 4.51 16 9 N -0.63 -34.44 3.70 -729.15 -2.70 -37.14 16 10 C 0.10 4.52 8.08 86.31 0.70 5.22 16 11 C 0.09 3.34 1.21 -10.48 -0.01 3.32 16 12 C 0.18 8.76 6.90 86.30 0.60 9.36 16 13 C 0.11 3.45 5.78 86.18 0.50 3.95 16 14 N -0.61 -15.07 3.03 -817.84 -2.48 -17.55 16 15 C 0.54 13.52 7.50 87.66 0.66 14.18 16 16 O -0.58 -19.40 15.75 -3.04 -0.05 -19.45 16 17 C -0.18 -2.73 4.69 -11.54 -0.05 -2.78 16 18 H 0.15 1.72 6.42 -2.39 -0.02 1.70 16 19 C -0.11 -1.16 9.75 30.60 0.30 -0.86 16 20 C -0.06 -0.92 5.84 -11.54 -0.07 -0.99 16 21 H 0.11 2.04 7.67 -2.38 -0.02 2.03 16 22 C 0.00 0.07 6.92 40.95 0.28 0.35 16 23 C -0.04 -0.62 10.94 83.53 0.91 0.30 16 24 N -0.54 -10.54 11.25 -200.30 -2.25 -12.80 16 25 C 0.19 2.48 13.04 180.26 2.35 4.83 16 26 N -0.56 -6.82 6.15 -186.49 -1.15 -7.96 16 27 H 0.43 2.93 8.96 -92.70 -0.83 2.10 16 28 C 0.08 1.35 6.50 86.34 0.56 1.91 16 29 C 0.03 0.82 6.88 72.06 0.50 1.31 16 30 O -0.37 -13.69 10.52 -148.98 -1.57 -15.25 16 31 H 0.25 14.92 8.31 -92.70 -0.77 14.14 16 32 H 0.04 1.83 7.94 -2.38 -0.02 1.81 16 33 H 0.05 2.03 7.27 -2.39 -0.02 2.01 16 34 H 0.05 2.91 7.17 -2.39 -0.02 2.89 16 35 H 0.04 1.95 8.09 -2.39 -0.02 1.93 16 36 H 0.09 3.03 6.91 -2.39 -0.02 3.01 16 37 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.14 0.84 7.94 -2.39 -0.02 0.83 16 40 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 41 H 0.24 1.08 8.06 -2.91 -0.02 1.05 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.13 1.29 5.59 -2.39 -0.01 1.27 16 44 H 0.13 2.40 8.14 -2.39 -0.02 2.39 16 45 H 0.05 1.19 7.19 -2.39 -0.02 1.17 16 Total: -1.00 -83.99 368.89 0.87 -83.13 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.20 Total: 12.92 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 8.58 Total: 23.62 kcal Atomic # 7 Polarization: -125.72 SS G_CDS: -8.33 Total: -134.05 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.61 Total: -34.70 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -83.99 0.87 -83.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053292044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.659 kcal (2) G-P(sol) polarization free energy of solvation -83.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds