Wall clock time and date at job start Tue Mar 31 2020 17:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31924 * 120.17534 * 2 1 4 4 N 1.28280 * 122.32409 * 180.02562 * 3 2 1 5 5 C 1.31915 * 122.51787 * 359.97438 * 4 3 2 6 6 C 1.38502 * 119.97022 * 359.72401 * 5 4 3 7 7 C 1.39731 * 120.16788 * 180.02562 * 2 1 3 8 8 C 1.48133 * 121.15059 * 359.97438 * 7 2 1 9 9 O 1.21518 * 119.99385 * 354.14968 * 8 7 2 10 10 N 1.34777 * 120.00385 * 174.14867 * 8 7 2 11 11 C 1.46498 * 119.99950 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47016 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.82772 * 59.43304 * 12 11 10 14 14 C 1.54472 * 109.90907 * 180.37502 * 12 11 10 15 15 C 1.55504 * 102.38717 * 140.91702 * 14 12 11 16 16 C 1.53886 * 100.75967 * 327.02890 * 15 14 12 17 17 C 1.52378 * 115.67922 * 263.23505 * 16 15 14 18 18 N 1.47268 * 87.70263 * 218.74920 * 17 16 15 19 19 C 1.36945 * 135.93455 * 205.92494 * 18 17 16 20 20 H 1.07998 * 119.99701 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99665 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00132 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99423 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47406 * 90.00402 * 23 21 19 25 25 H 1.48510 * 109.47180 * 210.00371 * 23 21 19 26 26 H 1.48503 * 109.47332 * 330.00163 * 23 21 19 27 27 C 1.47273 * 88.13112 * 26.17700 * 18 17 16 28 28 O 1.42404 * 106.67093 * 34.97667 * 16 15 14 29 29 H 1.09005 * 109.47041 * 263.69109 * 1 2 3 30 30 H 1.09000 * 109.46670 * 23.68697 * 1 2 3 31 31 H 1.08997 * 109.47288 * 143.69214 * 1 2 3 32 32 H 1.08004 * 120.01435 * 179.97438 * 5 4 3 33 33 H 1.08003 * 121.09081 * 180.30667 * 6 5 4 34 34 H 0.97002 * 119.99768 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47318 * 59.99565 * 11 10 8 36 36 H 1.08997 * 109.46939 * 299.99701 * 11 10 8 37 37 H 1.08998 * 110.82264 * 259.14567 * 14 12 11 38 38 H 1.09005 * 110.82246 * 22.49528 * 14 12 11 39 39 H 1.08998 * 111.15811 * 209.15002 * 15 14 12 40 40 H 1.08996 * 111.15728 * 84.90349 * 15 14 12 41 41 H 1.09000 * 113.51519 * 104.03649 * 17 16 15 42 42 H 1.09004 * 113.50986 * 333.45061 * 17 16 15 43 43 H 0.97007 * 119.99445 * 179.97438 * 22 21 19 44 44 H 1.08998 * 113.51719 * 88.53532 * 27 18 17 45 45 H 1.09005 * 113.51525 * 219.11886 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1886 -0.0005 5 6 4.2024 0.1036 -0.0005 6 6 3.6091 -1.1479 0.0058 7 6 2.2092 -1.2081 -0.0005 8 6 1.4983 -2.5076 -0.0006 9 8 0.2883 -2.5381 0.1072 10 7 2.1934 -3.6561 -0.1201 11 6 1.4901 -4.9413 -0.1206 12 6 2.5042 -6.0775 -0.2676 13 1 3.2155 -6.0472 0.5577 14 6 1.7722 -7.4377 -0.2788 15 6 2.5670 -8.2353 -1.3513 16 6 2.9631 -7.1037 -2.3160 17 6 2.0589 -6.9235 -3.5292 18 7 3.2717 -6.6489 -4.3181 19 6 3.5663 -5.9519 -5.4596 20 1 2.7826 -5.4363 -5.9948 21 6 4.8721 -5.9081 -5.9285 22 7 5.8269 -6.5368 -5.2764 23 14 5.2736 -4.9579 -7.4858 24 1 5.6154 -3.5557 -7.1360 25 1 6.4289 -5.5932 -8.1694 26 1 4.0959 -4.9695 -8.3904 27 6 4.0283 -7.4568 -3.3466 28 8 3.2011 -5.9497 -1.5162 29 1 -0.3633 -0.1129 1.0215 30 1 -0.3633 0.9411 -0.4129 31 1 -0.3634 -0.8281 -0.6085 32 1 5.2788 0.1912 -0.0014 33 1 4.2059 -2.0480 0.0108 34 1 3.1593 -3.6317 -0.2057 35 1 0.7876 -4.9707 -0.9535 36 1 0.9470 -5.0586 0.8171 37 1 1.8410 -7.9228 0.6948 38 1 0.7306 -7.3148 -0.5759 39 1 1.9317 -8.9699 -1.8462 40 1 3.4476 -8.7086 -0.9172 41 1 1.3891 -6.0673 -3.4490 42 1 1.5439 -7.8368 -3.8272 43 1 6.7394 -6.5064 -5.6044 44 1 4.0594 -8.5179 -3.5940 45 1 5.0115 -7.0481 -3.1132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053627216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:43 Heat of formation + Delta-G solvation = 46.694535 kcal Electronic energy + Delta-G solvation = -28612.821223 eV Core-core repulsion = 24633.422456 eV Total energy + Delta-G solvation = -3979.398766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51447 -40.22505 -39.40701 -36.72187 -34.90874 -33.91757 -33.41085 -32.23027 -31.93702 -29.67506 -28.37820 -27.09921 -25.75061 -24.82110 -24.05510 -23.17332 -21.73186 -21.50681 -20.91509 -19.07301 -18.35091 -17.87903 -16.76385 -16.65378 -15.98358 -15.91317 -15.76806 -15.38279 -15.04238 -14.89045 -14.57521 -14.23181 -13.89031 -13.69022 -13.51565 -13.14886 -12.99262 -12.93738 -12.80024 -12.47609 -12.34654 -11.84547 -11.57860 -11.39188 -11.21644 -11.17189 -11.05512 -10.85795 -10.56253 -10.51639 -10.49133 -10.13761 -9.98988 -9.75984 -9.67520 -9.56111 -9.24112 -8.91514 -8.78553 -6.91378 -5.78902 -3.10449 0.07240 0.61427 2.54379 2.79072 3.36871 3.37845 3.42895 3.44330 3.76762 3.90275 4.08393 4.12401 4.38086 4.42002 4.48159 4.58668 4.64210 4.92359 4.99860 5.06904 5.15729 5.18146 5.31494 5.32619 5.40175 5.46337 5.52978 5.56788 5.60231 5.69369 5.76521 5.85853 5.93153 6.04059 6.08074 6.17164 6.25157 6.32498 6.49159 6.59346 6.87575 7.14849 7.21748 7.46606 7.68366 7.89430 7.95467 8.41497 9.01369 9.68251 10.59904 11.38914 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009468 B = 0.003712 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.626776 B = 7541.387550 C = 9540.185724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.124 3.876 3 N -0.248 5.248 4 N -0.224 5.224 5 C 0.029 3.971 6 C -0.076 4.076 7 C -0.133 4.133 8 C 0.562 3.438 9 O -0.524 6.524 10 N -0.707 5.707 11 C 0.113 3.887 12 C 0.062 3.938 13 H 0.083 0.917 14 C -0.144 4.144 15 C -0.137 4.137 16 C 0.059 3.941 17 C 0.105 3.895 18 N -0.602 5.602 19 C -0.215 4.215 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.163 3.837 28 O -0.331 6.331 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.180 0.820 33 H 0.157 0.843 34 H 0.406 0.594 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.253 0.747 44 H 0.039 0.961 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 2.756 16.179 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.021 4.021 3 N -0.091 5.091 4 N -0.066 5.066 5 C -0.134 4.134 6 C -0.106 4.106 7 C -0.147 4.147 8 C 0.347 3.653 9 O -0.402 6.402 10 N -0.358 5.358 11 C -0.010 4.010 12 C 0.004 3.996 13 H 0.101 0.899 14 C -0.182 4.182 15 C -0.175 4.175 16 C 0.018 3.982 17 C -0.022 4.022 18 N -0.328 5.328 19 C -0.342 4.342 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.741 3.259 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.037 3.963 28 O -0.250 6.250 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.197 0.803 33 H 0.175 0.825 34 H 0.242 0.758 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.955 4.687 15.893 17.970 hybrid contribution 0.916 -1.374 -0.963 1.911 sum -6.039 3.313 14.931 16.443 Atomic orbital electron populations 1.20982 0.86262 1.04577 1.04522 1.23154 0.99714 0.88543 0.90654 1.73089 1.01524 1.24041 1.10456 1.72862 0.99672 1.27896 1.06133 1.24321 1.02918 0.89151 0.97050 1.22753 0.94102 1.00710 0.93066 1.21086 0.94556 0.95695 1.03397 1.17832 0.86916 0.83191 0.77329 1.90742 1.13086 1.86882 1.49452 1.45753 1.11466 1.05575 1.72977 1.21906 0.95112 0.81331 1.02672 1.23066 0.93521 0.93865 0.89196 0.89939 1.23054 1.00285 0.94403 1.00432 1.22976 1.00211 0.98205 0.96144 1.23361 1.00745 0.83714 0.90384 1.22757 0.91990 0.98009 0.89435 1.45469 1.02951 1.56470 1.27882 1.18900 0.93276 1.23229 0.98812 0.90238 1.24748 0.95585 1.00663 0.99282 1.69818 1.00260 1.46438 1.40219 0.86136 0.77726 0.79384 0.82617 1.21538 1.21569 1.20670 1.22082 0.96421 0.94194 0.83563 1.88375 1.69400 1.41080 1.26119 0.89454 0.90560 0.87665 0.80258 0.82522 0.75771 0.90451 0.90355 0.90164 0.90242 0.89835 0.90266 0.93982 0.94164 0.93681 0.94323 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 8.98 36.01 0.32 -0.85 16 2 C 0.12 1.59 6.91 -81.99 -0.57 1.02 16 3 N -0.25 -3.47 11.42 33.81 0.39 -3.08 16 4 N -0.22 -2.96 11.48 30.53 0.35 -2.61 16 5 C 0.03 0.30 11.30 -17.42 -0.20 0.10 16 6 C -0.08 -0.75 9.68 -38.78 -0.38 -1.13 16 7 C -0.13 -1.60 5.92 -104.57 -0.62 -2.22 16 8 C 0.56 7.22 7.74 -12.20 -0.09 7.12 16 9 O -0.52 -7.73 13.52 5.35 0.07 -7.66 16 10 N -0.71 -8.23 5.43 -61.16 -0.33 -8.56 16 11 C 0.11 1.30 5.24 -4.04 -0.02 1.28 16 12 C 0.06 0.73 3.61 -25.96 -0.09 0.63 16 13 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.14 -1.45 6.56 -24.63 -0.16 -1.61 16 15 C -0.14 -1.73 6.49 -24.94 -0.16 -1.89 16 16 C 0.06 1.04 1.55 -90.81 -0.14 0.90 16 17 C 0.10 2.11 8.24 -7.88 -0.06 2.05 16 18 N -0.60 -15.42 3.79 -184.99 -0.70 -16.12 16 19 C -0.21 -6.08 10.74 -15.05 -0.16 -6.24 16 20 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -27.08 11.52 55.49 0.64 -26.44 16 23 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.16 3.72 6.95 -7.88 -0.05 3.66 16 28 O -0.33 -5.67 10.68 -35.23 -0.38 -6.04 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 1.29 5.93 -51.93 -0.31 0.99 16 32 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.16 1.10 6.66 -52.48 -0.35 0.75 16 34 H 0.41 4.26 6.63 -40.82 -0.27 3.99 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 39 H 0.08 0.98 7.93 -51.93 -0.41 0.56 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.76 7.99 -51.93 -0.41 0.34 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.04 0.87 8.13 -51.93 -0.42 0.45 16 45 H 0.08 2.01 7.17 -51.93 -0.37 1.64 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -34.79 371.74 -8.17 -42.96 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.31 Total: 2.18 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -2.49 Total: 2.55 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.34 Total: -56.81 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.30 Total: -13.70 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.79 -8.17 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053627216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.656 kcal (2) G-P(sol) polarization free energy of solvation -34.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds