Wall clock time and date at job start Tue Mar 31 2020 17:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31924 * 120.17534 * 2 1 4 4 N 1.28280 * 122.32409 * 180.02562 * 3 2 1 5 5 C 1.31915 * 122.51787 * 359.97438 * 4 3 2 6 6 C 1.38502 * 119.97022 * 359.72401 * 5 4 3 7 7 C 1.39731 * 120.16788 * 180.02562 * 2 1 3 8 8 C 1.48133 * 121.15059 * 359.97438 * 7 2 1 9 9 O 1.21518 * 119.99385 * 354.14968 * 8 7 2 10 10 N 1.34777 * 120.00385 * 174.14867 * 8 7 2 11 11 C 1.46498 * 119.99950 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47016 * 180.02562 * 11 10 8 13 13 H 1.08994 * 109.82772 * 59.43304 * 12 11 10 14 14 C 1.54472 * 109.90907 * 180.37502 * 12 11 10 15 15 C 1.55504 * 102.38717 * 140.91702 * 14 12 11 16 16 C 1.53886 * 100.75967 * 327.02890 * 15 14 12 17 17 C 1.52378 * 115.67922 * 263.23505 * 16 15 14 18 18 N 1.47268 * 87.70263 * 218.74920 * 17 16 15 19 19 C 1.36945 * 135.93455 * 205.92494 * 18 17 16 20 20 H 1.07998 * 119.99701 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99665 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00132 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99423 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47406 * 90.00402 * 23 21 19 25 25 H 1.48510 * 109.47180 * 210.00371 * 23 21 19 26 26 H 1.48503 * 109.47332 * 330.00163 * 23 21 19 27 27 C 1.47273 * 88.13112 * 26.17700 * 18 17 16 28 28 O 1.42404 * 106.67093 * 34.97667 * 16 15 14 29 29 H 1.09005 * 109.47041 * 263.69109 * 1 2 3 30 30 H 1.09000 * 109.46670 * 23.68697 * 1 2 3 31 31 H 1.08997 * 109.47288 * 143.69214 * 1 2 3 32 32 H 1.08004 * 120.01435 * 179.97438 * 5 4 3 33 33 H 1.08003 * 121.09081 * 180.30667 * 6 5 4 34 34 H 0.97002 * 119.99768 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47318 * 59.99565 * 11 10 8 36 36 H 1.08997 * 109.46939 * 299.99701 * 11 10 8 37 37 H 1.08998 * 110.82264 * 259.14567 * 14 12 11 38 38 H 1.09005 * 110.82246 * 22.49528 * 14 12 11 39 39 H 1.08998 * 111.15811 * 209.15002 * 15 14 12 40 40 H 1.08996 * 111.15728 * 84.90349 * 15 14 12 41 41 H 1.09000 * 113.51519 * 104.03649 * 17 16 15 42 42 H 1.09004 * 113.50986 * 333.45061 * 17 16 15 43 43 H 0.97007 * 119.99445 * 179.97438 * 22 21 19 44 44 H 1.08998 * 113.51719 * 88.53532 * 27 18 17 45 45 H 1.09005 * 113.51525 * 219.11886 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1886 -0.0005 5 6 4.2024 0.1036 -0.0005 6 6 3.6091 -1.1479 0.0058 7 6 2.2092 -1.2081 -0.0005 8 6 1.4983 -2.5076 -0.0006 9 8 0.2883 -2.5381 0.1072 10 7 2.1934 -3.6561 -0.1201 11 6 1.4901 -4.9413 -0.1206 12 6 2.5042 -6.0775 -0.2676 13 1 3.2155 -6.0472 0.5577 14 6 1.7722 -7.4377 -0.2788 15 6 2.5670 -8.2353 -1.3513 16 6 2.9631 -7.1037 -2.3160 17 6 2.0589 -6.9235 -3.5292 18 7 3.2717 -6.6489 -4.3181 19 6 3.5663 -5.9519 -5.4596 20 1 2.7826 -5.4363 -5.9948 21 6 4.8721 -5.9081 -5.9285 22 7 5.8269 -6.5368 -5.2764 23 14 5.2736 -4.9579 -7.4858 24 1 5.6154 -3.5557 -7.1360 25 1 6.4289 -5.5932 -8.1694 26 1 4.0959 -4.9695 -8.3904 27 6 4.0283 -7.4568 -3.3466 28 8 3.2011 -5.9497 -1.5162 29 1 -0.3633 -0.1129 1.0215 30 1 -0.3633 0.9411 -0.4129 31 1 -0.3634 -0.8281 -0.6085 32 1 5.2788 0.1912 -0.0014 33 1 4.2059 -2.0480 0.0108 34 1 3.1593 -3.6317 -0.2057 35 1 0.7876 -4.9707 -0.9535 36 1 0.9470 -5.0586 0.8171 37 1 1.8410 -7.9228 0.6948 38 1 0.7306 -7.3148 -0.5759 39 1 1.9317 -8.9699 -1.8462 40 1 3.4476 -8.7086 -0.9172 41 1 1.3891 -6.0673 -3.4490 42 1 1.5439 -7.8368 -3.8272 43 1 6.7394 -6.5064 -5.6044 44 1 4.0594 -8.5179 -3.5940 45 1 5.0115 -7.0481 -3.1132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053627216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:42 Heat of formation + Delta-G solvation = 21.054693 kcal Electronic energy + Delta-G solvation = -28613.933050 eV Core-core repulsion = 24633.422456 eV Total energy + Delta-G solvation = -3980.510593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.42585 -41.47541 -40.46169 -38.15268 -35.98211 -34.84342 -34.39694 -34.07518 -33.06435 -30.90936 -29.44749 -28.61727 -26.80712 -26.51011 -25.29908 -24.10342 -23.22261 -22.51764 -21.89001 -20.49111 -19.25904 -18.80090 -18.71475 -17.72166 -16.95466 -16.89867 -16.81483 -16.70599 -16.34407 -16.15511 -15.81996 -15.55688 -15.24279 -14.88320 -14.66791 -14.42463 -14.20435 -14.08977 -13.86156 -13.59479 -13.33698 -13.16633 -13.08678 -12.83918 -12.67985 -12.53570 -12.32812 -12.15288 -12.07199 -11.63354 -11.51473 -11.41317 -11.31341 -11.23356 -10.95746 -10.90488 -10.62214 -10.25129 -10.17634 -8.92744 -7.92263 -5.24145 -0.82755 -0.24241 1.42404 1.43886 1.52304 1.57813 1.86638 2.44637 2.46240 2.76293 2.90033 3.23232 3.27513 3.30168 3.44439 3.54023 3.56867 3.66841 3.77030 3.88108 3.97515 4.19915 4.24009 4.38075 4.43787 4.47404 4.58188 4.60681 4.66372 4.73282 4.83511 4.87404 4.92882 4.97436 5.01552 5.03659 5.13452 5.18080 5.22522 5.29946 5.33328 5.36790 5.51730 5.92096 6.29027 6.37987 6.90002 6.94334 7.50932 7.58291 8.59083 9.25251 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009468 B = 0.003712 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.626776 B = 7541.387550 C = 9540.185724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.111 3.889 3 N -0.275 5.275 4 N -0.253 5.253 5 C 0.035 3.965 6 C -0.064 4.064 7 C -0.148 4.148 8 C 0.562 3.438 9 O -0.548 6.548 10 N -0.702 5.702 11 C 0.116 3.884 12 C 0.059 3.941 13 H 0.109 0.891 14 C -0.132 4.132 15 C -0.129 4.129 16 C 0.083 3.917 17 C 0.103 3.897 18 N -0.638 5.638 19 C -0.230 4.230 20 H 0.076 0.924 21 C -0.061 4.061 22 N -0.949 5.949 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.271 1.271 27 C 0.157 3.843 28 O -0.362 6.362 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.217 0.783 33 H 0.187 0.813 34 H 0.412 0.588 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.036 0.964 42 H 0.060 0.940 43 H 0.249 0.751 44 H 0.037 0.963 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.582 1.866 17.747 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.034 4.034 3 N -0.117 5.117 4 N -0.093 5.093 5 C -0.130 4.130 6 C -0.094 4.094 7 C -0.162 4.162 8 C 0.347 3.653 9 O -0.427 6.427 10 N -0.353 5.353 11 C -0.008 4.008 12 C 0.001 3.999 13 H 0.126 0.874 14 C -0.170 4.170 15 C -0.168 4.168 16 C 0.042 3.958 17 C -0.022 4.022 18 N -0.364 5.364 19 C -0.358 4.358 20 H 0.094 0.906 21 C -0.254 4.254 22 N -0.598 5.598 23 Si 0.802 3.198 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.196 1.196 27 C 0.032 3.968 28 O -0.281 6.281 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.234 0.766 33 H 0.204 0.796 34 H 0.249 0.751 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.199 3.797 17.486 19.288 hybrid contribution 0.997 -1.116 -1.418 2.062 sum -6.203 2.680 16.068 17.431 Atomic orbital electron populations 1.20928 0.85703 1.04361 1.04764 1.23358 1.00339 0.88789 0.90930 1.73029 1.02191 1.24733 1.11752 1.72771 0.99683 1.29585 1.07284 1.24919 1.04400 0.88403 0.95263 1.23128 0.93379 1.01879 0.91010 1.21128 0.95625 0.95059 1.04390 1.17945 0.86692 0.83655 0.76972 1.90729 1.14070 1.87231 1.50690 1.45762 1.11774 1.05459 1.72322 1.21931 0.94810 0.81108 1.02921 1.23370 0.94082 0.94938 0.87478 0.87380 1.23084 0.99893 0.92659 1.01357 1.22960 1.01414 0.96806 0.95596 1.22902 0.96387 0.86009 0.90538 1.22964 0.90954 0.98340 0.89965 1.45855 1.05965 1.56819 1.27739 1.19235 0.93476 1.23310 0.99799 0.90585 1.25525 0.95511 1.02067 1.02334 1.69998 1.00198 1.47968 1.41607 0.85152 0.77505 0.77845 0.79273 1.21412 1.21586 1.19649 1.22080 0.95910 0.93409 0.85416 1.88336 1.70455 1.41173 1.28149 0.88705 0.89854 0.88909 0.76600 0.79551 0.75105 0.92635 0.88061 0.86476 0.89464 0.88441 0.89098 0.94531 0.92215 0.94224 0.94523 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.26 8.98 71.24 0.64 -1.62 16 2 C 0.11 2.86 6.91 42.91 0.30 3.15 16 3 N -0.27 -7.71 11.42 -46.95 -0.54 -8.25 16 4 N -0.25 -6.52 11.48 -57.33 -0.66 -7.18 16 5 C 0.03 0.64 11.30 84.74 0.96 1.59 16 6 C -0.06 -1.14 9.68 22.79 0.22 -0.92 16 7 C -0.15 -3.44 5.92 -19.83 -0.12 -3.56 16 8 C 0.56 13.92 7.74 86.87 0.67 14.59 16 9 O -0.55 -15.94 13.52 -3.77 -0.05 -16.00 16 10 N -0.70 -15.11 5.43 -465.70 -2.53 -17.64 16 11 C 0.12 2.37 5.24 86.38 0.45 2.82 16 12 C 0.06 1.18 3.61 31.10 0.11 1.30 16 13 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 14 C -0.13 -2.07 6.56 31.96 0.21 -1.86 16 15 C -0.13 -2.84 6.49 31.76 0.21 -2.63 16 16 C 0.08 2.82 1.55 -10.91 -0.02 2.81 16 17 C 0.10 4.11 8.24 83.47 0.69 4.80 16 18 N -0.64 -33.18 3.79 -740.62 -2.81 -35.99 16 19 C -0.23 -13.27 10.74 84.03 0.90 -12.37 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 22 N -0.95 -57.31 11.52 21.65 0.25 -57.06 16 23 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 27 C 0.16 7.29 6.95 83.47 0.58 7.87 16 28 O -0.36 -11.85 10.68 -148.98 -1.59 -13.44 16 29 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.09 2.34 5.93 -2.39 -0.01 2.33 16 32 H 0.22 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.19 2.07 6.66 -2.91 -0.02 2.05 16 34 H 0.41 7.77 6.63 -92.71 -0.61 7.15 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 1.28 7.85 -2.38 -0.02 1.26 16 39 H 0.10 1.91 7.93 -2.39 -0.02 1.89 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 2.15 7.99 -2.38 -0.02 2.13 16 43 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 44 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 45 H 0.04 2.05 7.17 -2.38 -0.02 2.04 16 Total: -1.00 -79.16 371.74 0.78 -78.38 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.41 Total: 15.87 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 6.27 Total: 12.91 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -6.28 Total: -126.12 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -1.64 Total: -29.44 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -79.16 0.78 -78.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053627216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.431 kcal (2) G-P(sol) polarization free energy of solvation -79.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds