Wall clock time and date at job start Tue Mar 31 2020 16:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99681 * 2 1 4 4 H 1.48497 * 109.47330 * 239.99883 * 3 2 1 5 5 H 1.48502 * 109.47195 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47075 * 120.00127 * 3 2 1 7 7 C 1.38815 * 120.00507 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99977 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99571 * 359.97438 * 7 2 1 10 10 C 1.47707 * 134.43507 * 180.02562 * 9 7 2 11 11 C 1.53284 * 85.91253 * 155.86795 * 10 9 7 12 12 C 1.47713 * 134.44038 * 0.03228 * 9 7 2 13 13 C 1.53771 * 114.69981 * 267.35862 * 11 10 9 14 14 C 1.55460 * 102.01269 * 250.24535 * 13 11 10 15 15 H 1.08994 * 111.14067 * 84.35617 * 14 13 11 16 16 N 1.46496 * 111.10722 * 208.46127 * 14 13 11 17 17 C 1.34772 * 119.99760 * 198.09355 * 16 14 13 18 18 O 1.21576 * 120.00441 * 0.02562 * 17 16 14 19 19 C 1.47716 * 120.00369 * 180.02562 * 17 16 14 20 20 C 1.41500 * 126.52203 * 180.02562 * 19 17 16 21 21 C 1.35362 * 105.50194 * 180.24379 * 20 19 17 22 22 C 1.50696 * 126.38538 * 179.74396 * 21 20 19 23 23 C 1.53006 * 117.49988 * 213.74621 * 22 21 20 24 24 C 1.52999 * 117.50429 * 145.08170 * 22 21 20 25 25 N 1.35036 * 107.23150 * 359.58218 * 21 20 19 26 26 H 0.96998 * 124.89227 * 180.17169 * 25 21 20 27 27 N 1.28475 * 110.22646 * 0.44193 * 25 21 20 28 28 C 1.55009 * 101.02510 * 326.40341 * 14 13 11 29 29 O 1.42528 * 115.50704 * 140.19527 * 11 10 9 30 30 H 0.96999 * 120.00315 * 359.97438 * 1 2 3 31 31 H 1.08998 * 113.80235 * 41.62254 * 10 9 7 32 32 H 1.09005 * 113.90921 * 270.12909 * 10 9 7 33 33 H 1.08999 * 113.80369 * 89.88490 * 12 9 7 34 34 H 1.09001 * 113.80229 * 318.38218 * 12 9 7 35 35 H 1.09007 * 110.91899 * 132.06991 * 13 11 10 36 36 H 1.09001 * 110.92173 * 8.42985 * 13 11 10 37 37 H 0.97001 * 120.00363 * 18.10131 * 16 14 13 38 38 H 1.08002 * 127.24541 * 359.97398 * 20 19 17 39 39 H 1.09003 * 115.54833 * 359.40434 * 22 21 20 40 40 H 1.08996 * 117.49610 * 359.97438 * 23 22 21 41 41 H 1.08988 * 117.50213 * 145.01816 * 23 22 21 42 42 H 1.09002 * 117.50200 * 214.97828 * 24 22 21 43 43 H 1.09002 * 117.49601 * 0.02562 * 24 22 21 44 44 H 1.09001 * 110.30283 * 155.01831 * 28 14 13 45 45 H 1.09000 * 110.30297 * 277.06558 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.7221 -3.8109 -0.0005 11 6 0.3486 -4.0801 0.6246 12 6 -0.1048 -2.7564 -0.0007 13 6 0.3357 -4.1028 2.1620 14 6 0.0951 -5.6093 2.4614 15 1 1.0311 -6.1676 2.4450 16 7 -0.6005 -5.7889 3.7380 17 6 -0.5822 -6.9883 4.3524 18 8 0.0121 -7.9210 3.8475 19 6 -1.2840 -7.1698 5.6394 20 6 -1.3539 -8.3610 6.3999 21 6 -2.0999 -8.0533 7.4867 22 6 -2.4737 -8.9878 8.6082 23 6 -3.8400 -8.7891 9.2676 24 6 -2.5637 -8.3997 10.0177 25 7 -2.4437 -6.7517 7.3804 26 1 -2.9792 -6.2648 8.0260 27 7 -1.9640 -6.2526 6.2980 28 6 -0.8131 -6.0069 1.2698 29 8 -0.3231 -5.2450 0.1521 30 1 -0.4850 0.8400 0.0004 31 1 2.5583 -4.0346 0.6619 32 1 1.8428 -4.2359 -0.9970 33 1 -0.5312 -2.8642 -0.9980 34 1 -0.7168 -2.1441 0.6616 35 1 -0.4789 -3.4933 2.5535 36 1 1.2940 -3.7741 2.5642 37 1 -1.0744 -5.0447 4.1411 38 1 -0.9095 -9.3160 6.1611 39 1 -2.1054 -10.0092 8.5115 40 1 -4.4682 -7.9822 8.8905 41 1 -4.3702 -9.6795 9.6052 42 1 -2.2548 -9.0341 10.8485 43 1 -2.3529 -7.3366 10.1338 44 1 -0.7256 -7.0744 1.0674 45 1 -1.8502 -5.7466 1.4814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053935563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:50 Heat of formation + Delta-G solvation = 83.782292 kcal Electronic energy + Delta-G solvation = -27656.485898 eV Core-core repulsion = 23678.695378 eV Total energy + Delta-G solvation = -3977.790521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.08155 -40.14581 -38.97408 -37.72581 -36.21732 -34.49960 -32.25502 -32.05656 -31.12953 -29.94121 -28.05766 -25.63884 -24.90452 -24.66670 -23.72467 -23.05716 -21.95207 -21.47338 -21.16580 -20.14829 -18.70193 -18.15334 -17.19554 -16.74745 -16.46293 -16.11566 -16.01966 -15.28887 -14.96780 -14.82733 -14.63179 -14.49321 -14.20498 -13.81059 -13.68165 -13.26312 -12.96040 -12.74826 -12.48303 -12.27201 -12.15248 -11.67298 -11.58270 -11.34140 -11.28865 -11.04981 -11.04239 -10.87055 -10.74944 -10.66445 -10.31097 -10.23212 -10.03506 -9.72535 -9.54544 -9.17060 -9.07379 -8.78508 -8.64926 -6.88585 -5.76424 -3.08819 1.27549 1.67372 2.42001 3.01643 3.23174 3.33261 3.40433 3.44418 3.45689 3.84081 4.09884 4.15311 4.28110 4.28560 4.51739 4.53133 4.69770 4.95584 4.98724 5.11008 5.17830 5.18694 5.28380 5.32396 5.33723 5.39073 5.39377 5.43092 5.56923 5.57787 5.96829 5.97678 6.03804 6.21530 6.30806 6.39913 6.51394 6.57428 6.63778 6.73403 7.07398 7.24626 7.32659 7.52861 7.60353 7.74665 7.97463 8.11736 9.04831 9.70645 10.59693 11.40922 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.002182 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.680719 B =12829.889699 C =13740.671819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.220 4.220 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.118 3.882 11 C 0.055 3.945 12 C 0.165 3.835 13 C -0.117 4.117 14 C 0.109 3.891 15 H 0.106 0.894 16 N -0.702 5.702 17 C 0.604 3.396 18 O -0.530 6.530 19 C -0.007 4.007 20 C -0.168 4.168 21 C 0.045 3.955 22 C -0.087 4.087 23 C -0.174 4.174 24 C -0.174 4.174 25 N -0.380 5.380 26 H 0.443 0.557 27 N -0.253 5.253 28 C 0.044 3.956 29 O -0.365 6.365 30 H 0.254 0.746 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.409 0.591 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.334 -18.180 20.560 28.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.333 5.333 10 C -0.009 4.009 11 C 0.015 3.985 12 C 0.040 3.960 13 C -0.155 4.155 14 C 0.004 3.996 15 H 0.124 0.876 16 N -0.354 5.354 17 C 0.388 3.612 18 O -0.404 6.404 19 C -0.168 4.168 20 C -0.196 4.196 21 C -0.080 4.080 22 C -0.107 4.107 23 C -0.211 4.211 24 C -0.211 4.211 25 N -0.094 5.094 26 H 0.287 0.713 27 N -0.088 5.088 28 C -0.034 4.034 29 O -0.282 6.282 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.245 0.755 38 H 0.182 0.818 39 H 0.152 0.848 40 H 0.113 0.887 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.176 -17.443 19.842 27.655 hybrid contribution 0.120 0.831 0.680 1.081 sum -8.057 -16.612 20.522 27.605 Atomic orbital electron populations 1.69809 1.04997 1.25492 1.56496 1.24795 0.95700 0.97540 1.02438 0.86180 0.78447 0.83065 0.77943 1.21154 1.21578 1.21090 1.18928 0.90202 0.81576 1.44012 0.90131 1.45669 1.02289 0.99208 1.86156 1.22829 0.93839 0.86332 0.97849 1.24198 0.95206 0.86696 0.92427 1.22509 0.88236 0.87453 0.97822 1.22858 1.04346 0.93059 0.95246 1.22853 0.96451 0.97903 0.82414 0.87638 1.45732 1.54353 1.12522 1.22809 1.16877 0.79388 0.82936 0.81960 1.90811 1.43673 1.40553 1.65389 1.21920 1.04225 0.92433 0.98221 1.21445 1.04035 1.00006 0.94098 1.20453 1.02788 0.85933 0.98867 1.20537 1.01635 0.98640 0.89854 1.23118 0.90392 1.04243 1.03372 1.23123 1.01532 1.02020 0.94446 1.43212 1.40191 1.08358 1.17644 0.71282 1.73602 1.12811 1.25602 0.96833 1.23666 0.97052 0.96676 0.86040 1.88398 1.74101 1.36257 1.29463 0.93557 0.93458 0.93912 0.94712 0.90553 0.89746 0.88998 0.75490 0.81793 0.84798 0.88744 0.87460 0.87461 0.88730 0.89728 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.29 11.39 55.49 0.63 -26.66 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -6.18 10.70 -15.06 -0.16 -6.35 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.76 3.67 -181.28 -0.67 -16.43 16 10 C 0.12 2.55 8.37 -3.24 -0.03 2.52 16 11 C 0.06 1.11 1.68 -90.06 -0.15 0.96 16 12 C 0.17 4.04 7.01 -3.25 -0.02 4.02 16 13 C -0.12 -1.98 5.96 -25.02 -0.15 -2.13 16 14 C 0.11 1.62 3.37 -65.56 -0.22 1.40 16 15 H 0.11 1.64 7.74 -51.93 -0.40 1.24 16 16 N -0.70 -9.31 5.24 -52.50 -0.28 -9.58 16 17 C 0.60 8.54 7.82 -12.39 -0.10 8.45 16 18 O -0.53 -8.89 16.68 5.30 0.09 -8.80 16 19 C -0.01 -0.08 7.13 -82.76 -0.59 -0.67 16 20 C -0.17 -1.71 10.73 -39.37 -0.42 -2.14 16 21 C 0.04 0.34 6.64 -82.21 -0.55 -0.20 16 22 C -0.09 -0.41 6.26 -91.77 -0.57 -0.99 16 23 C -0.17 -0.57 10.23 -26.69 -0.27 -0.85 16 24 C -0.17 -0.58 10.23 -26.69 -0.27 -0.85 16 25 N -0.38 -2.89 6.80 33.50 0.23 -2.66 16 26 H 0.44 1.94 8.96 -190.44 -1.71 0.23 16 27 N -0.25 -2.71 11.92 33.42 0.40 -2.31 16 28 C 0.04 0.69 7.49 38.22 0.29 0.98 16 29 O -0.36 -6.99 11.14 -35.23 -0.39 -7.39 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.05 0.95 7.98 -51.93 -0.41 0.53 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.99 7.05 -51.93 -0.37 1.63 16 35 H 0.08 1.40 7.85 -51.93 -0.41 1.00 16 36 H 0.09 1.60 7.83 -51.93 -0.41 1.19 16 37 H 0.41 4.88 8.23 -40.82 -0.34 4.55 16 38 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.11 0.26 8.14 -51.94 -0.42 -0.17 16 42 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -34.21 379.95 -10.42 -44.63 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.81 Total: 2.52 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -3.32 Total: 3.82 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.32 Total: -57.65 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.30 Total: -16.19 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.21 -10.42 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053935563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.408 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds