Wall clock time and date at job start Tue Mar 31 2020 16:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99681 * 2 1 4 4 H 1.48497 * 109.47330 * 239.99883 * 3 2 1 5 5 H 1.48502 * 109.47195 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47075 * 120.00127 * 3 2 1 7 7 C 1.38815 * 120.00507 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99977 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99571 * 359.97438 * 7 2 1 10 10 C 1.47707 * 134.43507 * 180.02562 * 9 7 2 11 11 C 1.53284 * 85.91253 * 155.86795 * 10 9 7 12 12 C 1.47713 * 134.44038 * 0.03228 * 9 7 2 13 13 C 1.53771 * 114.69981 * 267.35862 * 11 10 9 14 14 C 1.55460 * 102.01269 * 250.24535 * 13 11 10 15 15 H 1.08994 * 111.14067 * 84.35617 * 14 13 11 16 16 N 1.46496 * 111.10722 * 208.46127 * 14 13 11 17 17 C 1.34772 * 119.99760 * 198.09355 * 16 14 13 18 18 O 1.21576 * 120.00441 * 0.02562 * 17 16 14 19 19 C 1.47716 * 120.00369 * 180.02562 * 17 16 14 20 20 C 1.41500 * 126.52203 * 180.02562 * 19 17 16 21 21 C 1.35362 * 105.50194 * 180.24379 * 20 19 17 22 22 C 1.50696 * 126.38538 * 179.74396 * 21 20 19 23 23 C 1.53006 * 117.49988 * 213.74621 * 22 21 20 24 24 C 1.52999 * 117.50429 * 145.08170 * 22 21 20 25 25 N 1.35036 * 107.23150 * 359.58218 * 21 20 19 26 26 H 0.96998 * 124.89227 * 180.17169 * 25 21 20 27 27 N 1.28475 * 110.22646 * 0.44193 * 25 21 20 28 28 C 1.55009 * 101.02510 * 326.40341 * 14 13 11 29 29 O 1.42528 * 115.50704 * 140.19527 * 11 10 9 30 30 H 0.96999 * 120.00315 * 359.97438 * 1 2 3 31 31 H 1.08998 * 113.80235 * 41.62254 * 10 9 7 32 32 H 1.09005 * 113.90921 * 270.12909 * 10 9 7 33 33 H 1.08999 * 113.80369 * 89.88490 * 12 9 7 34 34 H 1.09001 * 113.80229 * 318.38218 * 12 9 7 35 35 H 1.09007 * 110.91899 * 132.06991 * 13 11 10 36 36 H 1.09001 * 110.92173 * 8.42985 * 13 11 10 37 37 H 0.97001 * 120.00363 * 18.10131 * 16 14 13 38 38 H 1.08002 * 127.24541 * 359.97398 * 20 19 17 39 39 H 1.09003 * 115.54833 * 359.40434 * 22 21 20 40 40 H 1.08996 * 117.49610 * 359.97438 * 23 22 21 41 41 H 1.08988 * 117.50213 * 145.01816 * 23 22 21 42 42 H 1.09002 * 117.50200 * 214.97828 * 24 22 21 43 43 H 1.09002 * 117.49601 * 0.02562 * 24 22 21 44 44 H 1.09001 * 110.30283 * 155.01831 * 28 14 13 45 45 H 1.09000 * 110.30297 * 277.06558 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.7221 -3.8109 -0.0005 11 6 0.3486 -4.0801 0.6246 12 6 -0.1048 -2.7564 -0.0007 13 6 0.3357 -4.1028 2.1620 14 6 0.0951 -5.6093 2.4614 15 1 1.0311 -6.1676 2.4450 16 7 -0.6005 -5.7889 3.7380 17 6 -0.5822 -6.9883 4.3524 18 8 0.0121 -7.9210 3.8475 19 6 -1.2840 -7.1698 5.6394 20 6 -1.3539 -8.3610 6.3999 21 6 -2.0999 -8.0533 7.4867 22 6 -2.4737 -8.9878 8.6082 23 6 -3.8400 -8.7891 9.2676 24 6 -2.5637 -8.3997 10.0177 25 7 -2.4437 -6.7517 7.3804 26 1 -2.9792 -6.2648 8.0260 27 7 -1.9640 -6.2526 6.2980 28 6 -0.8131 -6.0069 1.2698 29 8 -0.3231 -5.2450 0.1521 30 1 -0.4850 0.8400 0.0004 31 1 2.5583 -4.0346 0.6619 32 1 1.8428 -4.2359 -0.9970 33 1 -0.5312 -2.8642 -0.9980 34 1 -0.7168 -2.1441 0.6616 35 1 -0.4789 -3.4933 2.5535 36 1 1.2940 -3.7741 2.5642 37 1 -1.0744 -5.0447 4.1411 38 1 -0.9095 -9.3160 6.1611 39 1 -2.1054 -10.0092 8.5115 40 1 -4.4682 -7.9822 8.8905 41 1 -4.3702 -9.6795 9.6052 42 1 -2.2548 -9.0341 10.8485 43 1 -2.3529 -7.3366 10.1338 44 1 -0.7256 -7.0744 1.0674 45 1 -1.8502 -5.7466 1.4814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053935563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:49 Heat of formation + Delta-G solvation = 59.459803 kcal Electronic energy + Delta-G solvation = -27657.540601 eV Core-core repulsion = 23678.695378 eV Total energy + Delta-G solvation = -3978.845223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.80513 -41.59087 -40.26892 -38.08395 -37.89140 -35.77704 -34.13351 -33.08979 -31.96377 -31.10915 -29.84344 -27.35204 -26.76897 -25.59475 -24.31398 -23.84347 -23.27697 -22.39099 -22.12686 -21.20638 -20.35725 -18.81724 -18.74014 -18.09603 -17.68728 -17.05698 -16.82834 -16.72425 -16.44758 -16.32275 -15.69925 -15.55365 -15.52785 -15.08371 -14.68213 -14.56198 -14.40703 -14.12937 -13.87466 -13.39354 -13.13981 -12.85879 -12.82706 -12.59267 -12.55323 -12.47024 -12.38892 -12.05932 -12.01538 -11.97231 -11.79891 -11.56843 -11.47523 -11.29680 -10.86637 -10.55439 -10.37853 -10.13002 -9.78714 -8.97279 -7.91261 -5.26037 0.41661 0.97117 1.46615 1.50365 1.56368 1.71209 2.04061 2.25611 2.44616 2.87420 3.00040 3.20904 3.27642 3.39681 3.42863 3.47151 3.66924 3.73274 3.77670 3.99087 4.03052 4.03248 4.11609 4.23938 4.56269 4.64757 4.67304 4.74597 4.75627 4.78397 4.82295 4.88210 4.90773 5.00291 5.00888 5.11483 5.14469 5.19333 5.21276 5.26092 5.35545 5.47861 5.87440 5.98454 6.16185 6.34263 6.78249 6.89466 7.04616 7.57964 8.52610 9.25843 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.002182 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.680719 B =12829.889699 C =13740.671819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.066 4.066 3 Si 0.983 3.017 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.234 4.234 8 H 0.088 0.912 9 N -0.628 5.628 10 C 0.116 3.884 11 C 0.078 3.922 12 C 0.161 3.839 13 C -0.109 4.109 14 C 0.126 3.874 15 H 0.104 0.896 16 N -0.694 5.694 17 C 0.606 3.394 18 O -0.561 6.561 19 C -0.032 4.032 20 C -0.191 4.191 21 C 0.065 3.935 22 C -0.104 4.104 23 C -0.166 4.166 24 C -0.166 4.166 25 N -0.365 5.365 26 H 0.458 0.542 27 N -0.264 5.264 28 C 0.042 3.958 29 O -0.378 6.378 30 H 0.250 0.750 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.011 0.989 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.417 0.583 38 H 0.167 0.833 39 H 0.144 0.856 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.449 -19.026 22.964 30.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.259 4.259 3 Si 0.810 3.190 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.362 4.362 8 H 0.105 0.895 9 N -0.356 5.356 10 C -0.009 4.009 11 C 0.037 3.963 12 C 0.035 3.965 13 C -0.147 4.147 14 C 0.020 3.980 15 H 0.122 0.878 16 N -0.347 5.347 17 C 0.392 3.608 18 O -0.438 6.438 19 C -0.191 4.191 20 C -0.219 4.219 21 C -0.061 4.061 22 C -0.124 4.124 23 C -0.203 4.203 24 C -0.204 4.204 25 N -0.081 5.081 26 H 0.305 0.695 27 N -0.101 5.101 28 C -0.036 4.036 29 O -0.295 6.295 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.254 0.746 38 H 0.184 0.816 39 H 0.162 0.838 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.294 -18.300 22.267 29.992 hybrid contribution 0.083 1.009 -0.016 1.013 sum -8.211 -17.290 22.251 29.351 Atomic orbital electron populations 1.70003 1.06477 1.25850 1.57771 1.25670 0.96608 1.00949 1.02663 0.85098 0.77101 0.78468 0.78311 1.20542 1.22017 1.19844 1.19349 0.90860 0.82714 1.43276 0.89464 1.45963 1.03099 1.00398 1.86189 1.22957 0.95481 0.84016 0.98439 1.23724 0.93478 0.85196 0.93906 1.22399 0.87565 0.89970 0.96543 1.22740 1.04505 0.94622 0.92806 1.22564 0.96403 0.96065 0.82965 0.87791 1.45607 1.54113 1.12808 1.22123 1.17124 0.78866 0.82413 0.82424 1.90785 1.45123 1.41452 1.66404 1.21706 1.05640 0.93704 0.98072 1.21615 1.05452 0.99829 0.95011 1.20781 1.00803 0.85927 0.98616 1.20674 1.03434 0.98549 0.89705 1.23223 0.89927 1.04834 1.02327 1.23226 1.01155 1.02363 0.93618 1.43284 1.39299 1.08571 1.16970 0.69482 1.73532 1.13125 1.25696 0.97752 1.23845 0.97604 0.96794 0.85324 1.88375 1.74068 1.35911 1.31161 0.94120 0.91349 0.93905 0.97112 0.92738 0.89436 0.89050 0.74597 0.81563 0.83838 0.88436 0.86256 0.86273 0.88468 0.88589 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.74 11.39 21.65 0.25 -57.50 16 2 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.98 45.79 29.55 68.60 2.03 47.82 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.23 -13.25 10.70 84.03 0.90 -12.35 16 8 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 9 N -0.63 -33.17 3.67 -732.74 -2.69 -35.86 16 10 C 0.12 5.01 8.37 86.24 0.72 5.74 16 11 C 0.08 3.13 1.68 -10.32 -0.02 3.11 16 12 C 0.16 8.12 7.01 86.23 0.60 8.72 16 13 C -0.11 -3.62 5.96 31.70 0.19 -3.43 16 14 C 0.13 3.62 3.37 46.53 0.16 3.78 16 15 H 0.10 3.12 7.74 -2.39 -0.02 3.10 16 16 N -0.69 -17.83 5.24 -438.29 -2.30 -20.12 16 17 C 0.61 16.87 7.82 86.75 0.68 17.54 16 18 O -0.56 -18.71 16.68 -3.96 -0.07 -18.78 16 19 C -0.03 -0.75 7.13 42.46 0.30 -0.45 16 20 C -0.19 -3.76 10.73 22.41 0.24 -3.52 16 21 C 0.06 0.89 6.64 41.40 0.28 1.16 16 22 C -0.10 -0.73 6.26 -11.54 -0.07 -0.81 16 23 C -0.17 -0.61 10.23 30.62 0.31 -0.30 16 24 C -0.17 -0.63 10.23 30.62 0.31 -0.31 16 25 N -0.36 -4.89 6.80 -47.93 -0.33 -5.22 16 26 H 0.46 2.96 8.96 -219.99 -1.97 0.99 16 27 N -0.26 -5.36 11.92 -48.17 -0.57 -5.93 16 28 C 0.04 1.28 7.49 72.67 0.54 1.82 16 29 O -0.38 -14.31 11.14 -148.98 -1.66 -15.97 16 30 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.07 2.66 7.98 -2.39 -0.02 2.64 16 32 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.05 2.96 7.05 -2.39 -0.02 2.94 16 35 H 0.09 2.87 7.85 -2.38 -0.02 2.85 16 36 H 0.09 3.09 7.83 -2.39 -0.02 3.07 16 37 H 0.42 9.56 8.23 -92.71 -0.76 8.80 16 38 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 39 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 0.31 8.14 -2.39 -0.02 0.30 16 41 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -74.33 379.95 -1.42 -75.75 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -1.70 Total: 18.40 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 5.62 Total: 17.41 kcal Atomic # 7 Polarization: -118.99 SS G_CDS: -5.64 Total: -124.63 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -1.73 Total: -34.75 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -74.33 -1.42 -75.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053935563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.213 kcal (2) G-P(sol) polarization free energy of solvation -74.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds