Wall clock time and date at job start Tue Mar 31 2020 17:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38551 * 120.01665 * 2 1 4 4 C 1.40082 * 117.81695 * 180.27427 * 3 2 1 5 5 C 1.48134 * 121.14241 * 179.97438 * 4 3 2 6 6 O 1.21508 * 120.00072 * 135.05655 * 5 4 3 7 7 N 1.34778 * 119.99907 * 315.05045 * 5 4 3 8 8 C 1.46842 * 120.41099 * 4.09664 * 7 5 4 9 9 C 1.53368 * 109.24805 * 232.22601 * 8 7 5 10 10 C 1.52791 * 108.81827 * 306.16875 * 9 8 7 11 11 H 1.08996 * 109.34153 * 302.83485 * 10 9 8 12 12 O 1.42602 * 111.11234 * 182.04951 * 10 9 8 13 13 C 1.43214 * 113.59404 * 175.88587 * 12 10 9 14 14 C 1.53192 * 109.35393 * 62.43841 * 13 12 10 15 15 N 1.47352 * 108.80475 * 308.55620 * 14 13 12 16 16 C 1.36930 * 121.31014 * 230.22134 * 15 14 13 17 17 H 1.07999 * 119.99878 * 149.99963 * 16 15 14 18 18 C 1.38813 * 120.00210 * 330.00575 * 16 15 14 19 19 N 1.31623 * 119.99652 * 349.74149 * 18 16 15 20 20 Si 1.86798 * 120.00241 * 169.75036 * 18 16 15 21 21 H 1.48499 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47452 * 119.99802 * 20 18 16 23 23 H 1.48503 * 109.46823 * 239.99657 * 20 18 16 24 24 C 1.46875 * 117.38414 * 50.24517 * 15 14 13 25 25 H 1.09005 * 109.65464 * 67.64657 * 24 15 14 26 26 C 1.47134 * 120.40892 * 183.81392 * 7 5 4 27 27 C 1.39765 * 117.70742 * 359.97438 * 4 3 2 28 28 N 1.31902 * 119.65699 * 0.02562 * 27 4 3 29 29 N 1.28271 * 122.32914 * 359.97438 * 28 27 4 30 30 H 1.09002 * 109.47674 * 269.72684 * 1 2 3 31 31 H 1.09008 * 109.47295 * 29.72513 * 1 2 3 32 32 H 1.09001 * 109.47643 * 149.72255 * 1 2 3 33 33 H 1.07998 * 121.09090 * 0.25504 * 3 2 1 34 34 H 1.08998 * 109.51096 * 352.15571 * 8 7 5 35 35 H 1.08994 * 109.50745 * 112.29805 * 8 7 5 36 36 H 1.09002 * 109.58003 * 65.96398 * 9 8 7 37 37 H 1.08997 * 109.58329 * 186.36866 * 9 8 7 38 38 H 1.09004 * 109.80236 * 302.36280 * 13 12 10 39 39 H 1.08994 * 109.38586 * 182.25962 * 13 12 10 40 40 H 1.09003 * 109.58331 * 188.76688 * 14 13 12 41 41 H 1.09004 * 109.58372 * 68.35750 * 14 13 12 42 42 H 0.97000 * 119.99440 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.72570 * 246.45112 * 26 7 5 44 44 H 1.09003 * 109.72430 * 7.12996 * 26 7 5 45 45 H 1.07996 * 120.17251 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5998 1.1459 -0.0059 5 6 4.4140 2.3834 -0.0069 6 8 5.3732 2.4802 0.7326 7 7 4.0908 3.4020 -0.8282 8 6 2.8830 3.3315 -1.6603 9 6 3.2559 3.6245 -3.1188 10 6 4.0015 4.9569 -3.1787 11 1 3.3769 5.7397 -2.7485 12 8 4.3313 5.3009 -4.5227 13 6 4.9496 6.5864 -4.6501 14 6 6.2790 6.5879 -3.8888 15 7 6.0426 6.0989 -2.5191 16 6 6.4979 6.7900 -1.4282 17 1 5.9600 6.7385 -0.4932 18 6 7.6509 7.5570 -1.5242 19 7 8.4161 7.4643 -2.5912 20 14 8.1167 8.7207 -0.1392 21 1 7.0986 8.6397 0.9388 22 1 9.4447 8.3375 0.4038 23 1 8.1769 10.1103 -0.6594 24 6 5.2997 4.8407 -2.3698 25 1 5.8979 4.0140 -2.7532 26 6 4.9407 4.6011 -0.8976 27 6 4.2017 -0.1155 -0.0109 28 7 3.4482 -1.1981 -0.0104 29 7 2.1667 -1.1420 -0.0050 30 1 -0.3634 -0.0049 1.0276 31 1 -0.3634 0.8925 -0.5096 32 1 -0.3634 -0.8875 -0.5181 33 1 1.6782 2.1452 0.0041 34 1 2.4495 2.3340 -1.5889 35 1 2.1591 4.0693 -1.3144 36 1 3.8977 2.8295 -3.4985 37 1 2.3503 3.6853 -3.7223 38 1 4.2947 7.3538 -4.2374 39 1 5.1349 6.7959 -5.7035 40 1 6.6772 7.6019 -3.8510 41 1 6.9896 5.9329 -4.3931 42 1 9.2220 8.0000 -2.6581 43 1 4.3975 5.4603 -0.5041 44 1 5.8494 4.4421 -0.3170 45 1 5.2780 -0.2033 -0.0151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074225995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:27 Heat of formation + Delta-G solvation = 21.887457 kcal Electronic energy + Delta-G solvation = -29549.713594 eV Core-core repulsion = 25569.239112 eV Total energy + Delta-G solvation = -3980.474482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63831 -40.09216 -38.66194 -36.34468 -34.83841 -34.34952 -33.63322 -31.79347 -31.48341 -29.98176 -28.67053 -27.23132 -26.17276 -24.92382 -24.02862 -23.76267 -22.13643 -21.49099 -19.89477 -19.49937 -18.04319 -17.44967 -17.09311 -16.80421 -16.04878 -15.72786 -15.51496 -15.23085 -15.09654 -14.61806 -14.47312 -14.06726 -13.83157 -13.76138 -13.68791 -13.30621 -13.20816 -12.96353 -12.86016 -12.73961 -12.58771 -12.02764 -11.48479 -11.28700 -11.10636 -11.09379 -10.99913 -10.74637 -10.58251 -10.37307 -10.34065 -10.24142 -10.13184 -10.02536 -9.74432 -9.66465 -9.09304 -8.63283 -8.60530 -6.78261 -5.91252 -3.41484 0.13653 0.52764 2.44634 2.75489 3.22714 3.29816 3.38107 3.39347 3.67116 3.88306 4.13205 4.15238 4.18558 4.34726 4.42120 4.66894 4.82822 4.93893 4.99776 5.12571 5.15357 5.21643 5.28517 5.29356 5.34203 5.52235 5.53267 5.59656 5.62078 5.73151 5.79045 5.83478 5.99437 6.01156 6.12679 6.23437 6.32324 6.46975 6.50915 6.73922 7.04817 7.25645 7.45896 7.62909 7.80211 7.95170 8.26328 8.36579 9.02460 9.64275 10.22821 11.16402 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.003530 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.570985 B = 7930.089298 C = 8953.537820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.066 3.934 3 C -0.094 4.094 4 C -0.111 4.111 5 C 0.559 3.441 6 O -0.516 6.516 7 N -0.598 5.598 8 C 0.096 3.904 9 C -0.125 4.125 10 C 0.076 3.924 11 H 0.054 0.946 12 O -0.389 6.389 13 C 0.038 3.962 14 C 0.143 3.857 15 N -0.588 5.588 16 C -0.262 4.262 17 H 0.071 0.929 18 C 0.010 3.990 19 N -0.901 5.901 20 Si 0.905 3.095 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.288 1.288 24 C 0.137 3.863 25 H 0.038 0.962 26 C 0.124 3.876 27 C 0.081 3.919 28 N -0.235 5.235 29 N -0.234 5.234 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.160 0.840 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.028 0.972 42 H 0.256 0.744 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.624 -9.207 0.908 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.078 4.078 3 C -0.123 4.123 4 C -0.125 4.125 5 C 0.344 3.656 6 O -0.391 6.391 7 N -0.331 5.331 8 C -0.027 4.027 9 C -0.163 4.163 10 C 0.017 3.983 11 H 0.072 0.928 12 O -0.308 6.308 13 C -0.040 4.040 14 C 0.018 3.982 15 N -0.312 5.312 16 C -0.391 4.391 17 H 0.089 0.911 18 C -0.190 4.190 19 N -0.544 5.544 20 Si 0.735 3.265 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.215 1.215 24 C 0.029 3.971 25 H 0.056 0.944 26 C 0.004 3.996 27 C -0.083 4.083 28 N -0.075 5.075 29 N -0.078 5.078 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.177 0.823 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -16.004 -10.810 1.129 19.346 hybrid contribution 0.634 2.504 0.719 2.681 sum -15.370 -8.305 1.848 17.568 Atomic orbital electron populations 1.20718 0.86898 1.04404 1.03936 1.22903 0.99324 0.89885 0.95672 1.22635 0.93309 1.00693 0.95672 1.21316 0.94734 0.96344 1.00152 1.17952 0.84215 0.82251 0.81194 1.90856 1.27922 1.80691 1.39646 1.48216 1.25908 1.18273 1.40668 1.22172 0.87126 1.02723 0.90634 1.21849 1.01233 0.97954 0.95303 1.22435 0.96285 0.95103 0.84526 0.92830 1.87763 1.80454 1.36778 1.25808 1.23376 0.96518 0.83715 1.00347 1.21461 0.91488 1.01687 0.83610 1.43999 1.64577 1.19934 1.02729 1.19150 1.04639 1.23900 0.91387 0.91097 1.25175 0.95229 1.01033 0.97542 1.69982 1.14269 1.41665 1.28515 0.86177 0.78369 0.80416 0.81556 1.20102 1.21425 1.21467 1.21401 0.92261 0.91094 0.92387 0.94401 1.21978 0.95376 0.84068 0.98225 1.24493 1.03033 0.87798 0.92995 1.73101 0.99094 1.26639 1.08711 1.72825 1.02058 1.24919 1.08029 0.89598 0.89932 0.89612 0.82262 0.89190 0.90418 0.90759 0.89993 0.94000 0.90013 0.88546 0.95350 0.93416 0.90361 0.87609 0.80157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 10.19 36.00 0.37 -0.16 16 2 C 0.07 0.61 6.86 -82.45 -0.57 0.04 16 3 C -0.09 -0.84 7.19 -38.77 -0.28 -1.12 16 4 C -0.11 -1.33 5.21 -104.57 -0.55 -1.87 16 5 C 0.56 8.35 7.36 -12.20 -0.09 8.26 16 6 O -0.52 -9.73 16.43 5.36 0.09 -9.65 16 7 N -0.60 -8.54 2.97 -173.43 -0.52 -9.06 16 8 C 0.10 1.01 5.21 -3.67 -0.02 0.99 16 9 C -0.12 -1.56 5.82 -26.65 -0.16 -1.72 16 10 C 0.08 1.29 2.49 -26.63 -0.07 1.22 16 11 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 12 O -0.39 -7.29 10.47 -35.23 -0.37 -7.66 16 13 C 0.04 0.72 6.97 37.26 0.26 0.98 16 14 C 0.14 3.29 5.37 -3.48 -0.02 3.27 16 15 N -0.59 -14.00 3.04 -164.10 -0.50 -14.50 16 16 C -0.26 -6.73 8.83 -15.06 -0.13 -6.87 16 17 H 0.07 1.77 6.32 -52.49 -0.33 1.44 16 18 C 0.01 0.26 5.09 -17.43 -0.09 0.17 16 19 N -0.90 -25.18 11.04 55.49 0.61 -24.57 16 20 Si 0.91 21.02 29.57 -169.99 -5.03 16.00 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.14 2.74 3.03 -67.30 -0.20 2.53 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 C 0.12 2.25 4.51 -3.48 -0.02 2.23 16 27 C 0.08 1.00 11.04 -16.95 -0.19 0.81 16 28 N -0.24 -3.10 11.49 30.78 0.35 -2.74 16 29 N -0.23 -2.84 11.40 33.58 0.38 -2.46 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.25 8.09 -51.92 -0.42 -0.17 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.16 0.99 6.63 -52.49 -0.35 0.65 16 34 H 0.09 0.75 4.21 -51.93 -0.22 0.53 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.10 2.43 6.26 -51.93 -0.32 2.10 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.08 1.40 7.38 -51.93 -0.38 1.01 16 44 H 0.11 2.23 6.84 -51.93 -0.36 1.88 16 45 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -32.23 356.42 -7.51 -39.73 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.17 Total: 0.76 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -1.74 Total: 8.77 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.34 Total: -53.33 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.28 Total: -17.30 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.23 -7.51 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074225995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.620 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds