Wall clock time and date at job start Tue Mar 31 2020 17:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38551 * 120.01665 * 2 1 4 4 C 1.40082 * 117.81695 * 180.27427 * 3 2 1 5 5 C 1.48134 * 121.14241 * 179.97438 * 4 3 2 6 6 O 1.21508 * 120.00072 * 135.05655 * 5 4 3 7 7 N 1.34778 * 119.99907 * 315.05045 * 5 4 3 8 8 C 1.46842 * 120.41099 * 4.09664 * 7 5 4 9 9 C 1.53368 * 109.24805 * 232.22601 * 8 7 5 10 10 C 1.52791 * 108.81827 * 306.16875 * 9 8 7 11 11 H 1.08996 * 109.34153 * 302.83485 * 10 9 8 12 12 O 1.42602 * 111.11234 * 182.04951 * 10 9 8 13 13 C 1.43214 * 113.59404 * 175.88587 * 12 10 9 14 14 C 1.53192 * 109.35393 * 62.43841 * 13 12 10 15 15 N 1.47352 * 108.80475 * 308.55620 * 14 13 12 16 16 C 1.36930 * 121.31014 * 230.22134 * 15 14 13 17 17 H 1.07999 * 119.99878 * 149.99963 * 16 15 14 18 18 C 1.38813 * 120.00210 * 330.00575 * 16 15 14 19 19 N 1.31623 * 119.99652 * 349.74149 * 18 16 15 20 20 Si 1.86798 * 120.00241 * 169.75036 * 18 16 15 21 21 H 1.48499 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47452 * 119.99802 * 20 18 16 23 23 H 1.48503 * 109.46823 * 239.99657 * 20 18 16 24 24 C 1.46875 * 117.38414 * 50.24517 * 15 14 13 25 25 H 1.09005 * 109.65464 * 67.64657 * 24 15 14 26 26 C 1.47134 * 120.40892 * 183.81392 * 7 5 4 27 27 C 1.39765 * 117.70742 * 359.97438 * 4 3 2 28 28 N 1.31902 * 119.65699 * 0.02562 * 27 4 3 29 29 N 1.28271 * 122.32914 * 359.97438 * 28 27 4 30 30 H 1.09002 * 109.47674 * 269.72684 * 1 2 3 31 31 H 1.09008 * 109.47295 * 29.72513 * 1 2 3 32 32 H 1.09001 * 109.47643 * 149.72255 * 1 2 3 33 33 H 1.07998 * 121.09090 * 0.25504 * 3 2 1 34 34 H 1.08998 * 109.51096 * 352.15571 * 8 7 5 35 35 H 1.08994 * 109.50745 * 112.29805 * 8 7 5 36 36 H 1.09002 * 109.58003 * 65.96398 * 9 8 7 37 37 H 1.08997 * 109.58329 * 186.36866 * 9 8 7 38 38 H 1.09004 * 109.80236 * 302.36280 * 13 12 10 39 39 H 1.08994 * 109.38586 * 182.25962 * 13 12 10 40 40 H 1.09003 * 109.58331 * 188.76688 * 14 13 12 41 41 H 1.09004 * 109.58372 * 68.35750 * 14 13 12 42 42 H 0.97000 * 119.99440 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.72570 * 246.45112 * 26 7 5 44 44 H 1.09003 * 109.72430 * 7.12996 * 26 7 5 45 45 H 1.07996 * 120.17251 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.5998 1.1459 -0.0059 5 6 4.4140 2.3834 -0.0069 6 8 5.3732 2.4802 0.7326 7 7 4.0908 3.4020 -0.8282 8 6 2.8830 3.3315 -1.6603 9 6 3.2559 3.6245 -3.1188 10 6 4.0015 4.9569 -3.1787 11 1 3.3769 5.7397 -2.7485 12 8 4.3313 5.3009 -4.5227 13 6 4.9496 6.5864 -4.6501 14 6 6.2790 6.5879 -3.8888 15 7 6.0426 6.0989 -2.5191 16 6 6.4979 6.7900 -1.4282 17 1 5.9600 6.7385 -0.4932 18 6 7.6509 7.5570 -1.5242 19 7 8.4161 7.4643 -2.5912 20 14 8.1167 8.7207 -0.1392 21 1 7.0986 8.6397 0.9388 22 1 9.4447 8.3375 0.4038 23 1 8.1769 10.1103 -0.6594 24 6 5.2997 4.8407 -2.3698 25 1 5.8979 4.0140 -2.7532 26 6 4.9407 4.6011 -0.8976 27 6 4.2017 -0.1155 -0.0109 28 7 3.4482 -1.1981 -0.0104 29 7 2.1667 -1.1420 -0.0050 30 1 -0.3634 -0.0049 1.0276 31 1 -0.3634 0.8925 -0.5096 32 1 -0.3634 -0.8875 -0.5181 33 1 1.6782 2.1452 0.0041 34 1 2.4495 2.3340 -1.5889 35 1 2.1591 4.0693 -1.3144 36 1 3.8977 2.8295 -3.4985 37 1 2.3503 3.6853 -3.7223 38 1 4.2947 7.3538 -4.2374 39 1 5.1349 6.7959 -5.7035 40 1 6.6772 7.6019 -3.8510 41 1 6.9896 5.9329 -4.3931 42 1 9.2220 8.0000 -2.6581 43 1 4.3975 5.4603 -0.5041 44 1 5.8494 4.4421 -0.3170 45 1 5.2780 -0.2033 -0.0151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074225995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:26 Heat of formation + Delta-G solvation = -1.236785 kcal Electronic energy + Delta-G solvation = -29550.716337 eV Core-core repulsion = 25569.239112 eV Total energy + Delta-G solvation = -3981.477224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.56487 -41.31135 -40.06700 -37.63575 -36.56479 -35.15269 -34.62198 -33.31098 -33.00414 -31.43415 -29.41830 -28.84259 -27.36816 -26.17057 -25.33397 -24.81759 -23.56733 -22.82932 -21.50114 -20.65492 -18.97528 -18.79358 -18.40868 -17.87795 -17.35586 -17.10167 -16.97004 -16.56433 -16.19767 -16.09005 -15.69848 -15.42606 -15.27411 -14.86127 -14.71397 -14.67933 -14.59496 -13.98880 -13.94662 -13.73829 -13.35422 -13.15063 -12.99945 -12.90153 -12.74623 -12.47395 -12.38457 -12.11088 -12.06056 -11.97226 -11.82749 -11.67765 -11.34221 -11.17662 -10.79757 -10.74629 -10.67527 -10.56393 -9.88598 -8.72591 -7.92727 -5.45747 -0.73770 -0.26355 1.29508 1.43132 1.45940 1.54875 1.62640 2.35587 2.44250 2.77966 2.92418 2.99223 3.24323 3.29789 3.39837 3.41967 3.68312 3.80048 3.84661 3.97989 4.15740 4.17137 4.18797 4.24150 4.36954 4.40372 4.50756 4.53435 4.57988 4.63889 4.73933 4.83572 4.83991 4.86708 4.96005 5.02962 5.06750 5.10692 5.21032 5.33383 5.34966 5.54834 5.59693 6.10695 6.25204 6.33785 6.78197 7.03521 7.52598 7.69786 8.26048 9.13124 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.003530 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.570985 B = 7930.089298 C = 8953.537820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.075 3.925 3 C -0.072 4.072 4 C -0.122 4.122 5 C 0.561 3.439 6 O -0.567 6.567 7 N -0.594 5.594 8 C 0.094 3.906 9 C -0.118 4.118 10 C 0.080 3.920 11 H 0.066 0.934 12 O -0.394 6.394 13 C 0.052 3.948 14 C 0.147 3.853 15 N -0.605 5.605 16 C -0.260 4.260 17 H 0.078 0.922 18 C -0.046 4.046 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.298 1.298 23 H -0.286 1.286 24 C 0.132 3.868 25 H 0.003 0.997 26 C 0.139 3.861 27 C 0.071 3.929 28 N -0.260 5.260 29 N -0.260 5.260 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.200 0.800 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.059 0.941 37 H 0.119 0.881 38 H 0.054 0.946 39 H 0.106 0.894 40 H 0.070 0.930 41 H -0.007 1.007 42 H 0.251 0.749 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.328 -9.111 1.115 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.070 4.070 3 C -0.101 4.101 4 C -0.137 4.137 5 C 0.348 3.652 6 O -0.446 6.446 7 N -0.326 5.326 8 C -0.026 4.026 9 C -0.156 4.156 10 C 0.021 3.979 11 H 0.084 0.916 12 O -0.313 6.313 13 C -0.025 4.025 14 C 0.021 3.979 15 N -0.330 5.330 16 C -0.390 4.390 17 H 0.096 0.904 18 C -0.242 4.242 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.187 1.187 22 H -0.225 1.225 23 H -0.212 1.212 24 C 0.025 3.975 25 H 0.021 0.979 26 C 0.017 3.983 27 C -0.094 4.094 28 N -0.099 5.099 29 N -0.103 5.103 30 H 0.118 0.882 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.217 0.783 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.089 0.911 41 H 0.011 0.989 42 H 0.060 0.940 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -20.771 -10.753 1.320 23.427 hybrid contribution 2.049 2.393 0.645 3.216 sum -18.722 -8.360 1.965 20.598 Atomic orbital electron populations 1.20939 0.83548 1.06154 1.05293 1.23560 1.01203 0.88803 0.93414 1.23050 0.91656 1.02393 0.93017 1.21002 0.95917 0.94286 1.02456 1.18359 0.83697 0.82880 0.80283 1.90830 1.30283 1.81604 1.41845 1.48214 1.26531 1.16834 1.41007 1.22578 0.85831 1.05663 0.88576 1.21893 1.01834 0.94544 0.97348 1.22550 0.94434 0.98007 0.82952 0.91642 1.87772 1.80014 1.36571 1.26920 1.23196 0.93906 0.84360 1.01088 1.21305 0.93444 0.99221 0.83897 1.44286 1.64862 1.21341 1.02554 1.19497 1.04315 1.23062 0.92131 0.90401 1.25921 0.95571 1.03053 0.99670 1.70147 1.14730 1.42921 1.30387 0.85220 0.77606 0.78438 0.79319 1.18679 1.22505 1.21241 1.21559 0.93238 0.88247 0.94452 0.97939 1.21504 0.94766 0.85973 0.96072 1.24484 1.03110 0.88212 0.93599 1.73081 0.99939 1.27005 1.09877 1.72755 1.01677 1.26874 1.08989 0.88189 0.86600 0.89521 0.78331 0.86298 0.86604 0.92188 0.86277 0.92749 0.87558 0.91124 0.98871 0.94020 0.89587 0.91654 0.80618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 10.19 71.23 0.73 0.20 16 2 C 0.08 1.08 6.86 42.62 0.29 1.38 16 3 C -0.07 -0.99 7.19 22.79 0.16 -0.82 16 4 C -0.12 -2.73 5.21 -19.83 -0.10 -2.83 16 5 C 0.56 16.47 7.36 86.87 0.64 17.11 16 6 O -0.57 -22.25 16.43 -3.74 -0.06 -22.32 16 7 N -0.59 -15.99 2.97 -820.91 -2.44 -18.43 16 8 C 0.09 1.53 5.21 86.44 0.45 1.98 16 9 C -0.12 -2.49 5.82 30.65 0.18 -2.31 16 10 C 0.08 2.51 2.49 30.66 0.08 2.58 16 11 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 12 O -0.39 -13.98 10.47 -148.98 -1.56 -15.54 16 13 C 0.05 1.90 6.97 72.05 0.50 2.40 16 14 C 0.15 7.00 5.37 86.28 0.46 7.47 16 15 N -0.61 -29.63 3.04 -673.09 -2.04 -31.68 16 16 C -0.26 -13.72 8.83 84.03 0.74 -12.97 16 17 H 0.08 3.92 6.32 -2.91 -0.02 3.90 16 18 C -0.05 -2.54 5.09 84.86 0.43 -2.11 16 19 N -0.94 -54.76 11.04 21.65 0.24 -54.52 16 20 Si 0.97 44.22 29.57 68.60 2.03 46.24 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 24 C 0.13 5.37 3.03 45.19 0.14 5.51 16 25 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 26 C 0.14 5.05 4.51 86.40 0.39 5.44 16 27 C 0.07 1.76 11.04 85.05 0.94 2.70 16 28 N -0.26 -6.73 11.49 -56.52 -0.65 -7.38 16 29 N -0.26 -5.82 11.40 -47.69 -0.54 -6.36 16 30 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.12 -0.10 8.09 -2.38 -0.02 -0.12 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.20 1.12 6.63 -2.91 -0.02 1.10 16 34 H 0.12 1.30 4.21 -2.39 -0.01 1.29 16 35 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 40 H 0.07 3.71 6.26 -2.39 -0.01 3.70 16 41 H -0.01 -0.37 8.14 -2.38 -0.02 -0.38 16 42 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 43 H 0.09 2.97 7.38 -2.39 -0.02 2.96 16 44 H 0.06 2.90 6.84 -2.39 -0.02 2.89 16 45 H 0.18 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -76.96 356.42 2.01 -74.94 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.02 Total: 9.32 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 6.03 Total: 25.72 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -5.44 Total: -118.38 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.62 Total: -37.85 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -76.96 2.01 -74.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074225995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.707 kcal (2) G-P(sol) polarization free energy of solvation -76.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds