Wall clock time and date at job start Tue Mar 31 2020 17:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38574 * 119.96828 * 2 1 4 4 C 1.38817 * 118.07150 * 179.97438 * 3 2 1 5 5 C 1.39715 * 117.89823 * 359.97438 * 4 3 2 6 6 C 1.48161 * 120.18138 * 179.97438 * 5 4 3 7 7 O 1.21511 * 119.99780 * 339.23483 * 6 5 4 8 8 N 1.34778 * 119.99955 * 159.23562 * 6 5 4 9 9 C 1.46845 * 120.41090 * 0.38924 * 8 6 5 10 10 C 1.52902 * 109.49693 * 232.18920 * 9 8 6 11 11 C 1.52788 * 108.89443 * 306.41505 * 10 9 8 12 12 H 1.08998 * 109.34658 * 302.70068 * 11 10 9 13 13 O 1.42605 * 111.11206 * 182.39171 * 11 10 9 14 14 C 1.43149 * 113.63265 * 176.39046 * 13 11 10 15 15 C 1.53196 * 109.74404 * 61.68416 * 14 13 11 16 16 N 1.47360 * 108.79906 * 308.79252 * 15 14 13 17 17 C 1.36934 * 121.30132 * 230.26157 * 16 15 14 18 18 H 1.08004 * 119.99663 * 151.37210 * 17 16 15 19 19 C 1.38813 * 120.00134 * 331.36461 * 17 16 15 20 20 N 1.31614 * 119.99915 * 350.61969 * 19 17 16 21 21 Si 1.86800 * 119.99812 * 170.61449 * 19 17 16 22 22 H 1.48505 * 109.46837 * 90.00167 * 21 19 17 23 23 H 1.48502 * 109.47170 * 210.00037 * 21 19 17 24 24 H 1.48496 * 109.47393 * 330.00291 * 21 19 17 25 25 C 1.46871 * 117.38612 * 50.23911 * 16 15 14 26 26 H 1.08999 * 110.20792 * 67.97437 * 25 16 15 27 27 C 1.47128 * 120.41136 * 180.65851 * 8 6 5 28 28 N 1.32778 * 119.63608 * 359.97438 * 5 4 3 29 29 N 1.28352 * 122.02730 * 0.02562 * 28 5 4 30 30 H 1.08994 * 109.47048 * 90.00333 * 1 2 3 31 31 H 1.09005 * 109.46854 * 209.99880 * 1 2 3 32 32 H 1.08999 * 109.46962 * 329.99801 * 1 2 3 33 33 H 1.08000 * 120.96280 * 0.02562 * 3 2 1 34 34 H 1.08000 * 121.04998 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.50600 * 352.18114 * 9 8 6 36 36 H 1.09002 * 109.50672 * 112.31509 * 9 8 6 37 37 H 1.08998 * 109.65924 * 186.52258 * 10 9 8 38 38 H 1.09003 * 109.42620 * 66.17134 * 10 9 8 39 39 H 1.08997 * 109.42600 * 181.76535 * 14 13 11 40 40 H 1.09001 * 109.42224 * 301.60259 * 14 13 11 41 41 H 1.09000 * 109.58263 * 68.58868 * 15 14 13 42 42 H 1.08995 * 109.57904 * 188.86486 * 15 14 13 43 43 H 0.97006 * 119.99795 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.73156 * 246.43850 * 27 8 6 45 45 H 1.09001 * 109.72588 * 7.11045 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5866 1.1545 0.0005 5 6 4.1991 -0.1012 0.0016 6 6 5.6768 -0.2092 0.0017 7 8 6.3544 0.7276 -0.3723 8 7 6.2693 -1.3465 0.4164 9 6 5.4590 -2.4871 0.8621 10 6 5.9365 -2.9447 2.2407 11 6 7.4404 -3.2077 2.1812 12 1 7.6470 -3.9496 1.4099 13 8 7.9272 -3.6910 3.4313 14 6 9.3171 -4.0332 3.4124 15 6 10.1519 -2.7898 3.0901 16 7 9.6095 -2.1555 1.8756 17 6 10.4216 -1.8179 0.8260 18 1 10.0256 -1.7986 -0.1786 19 6 11.7537 -1.5005 1.0532 20 7 12.1919 -1.3430 2.2842 21 14 12.9244 -1.2970 -0.3882 22 1 12.9204 0.1199 -0.8328 23 1 14.2965 -1.6807 0.0305 24 1 12.4868 -2.1684 -1.5081 25 6 8.1638 -1.9000 1.8349 26 1 7.8969 -1.1304 2.5592 27 6 7.7362 -1.4584 0.4339 28 7 3.4497 -1.1973 0.0026 29 7 2.1672 -1.1450 0.0021 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6745 2.1444 0.0004 34 1 4.1740 2.0608 0.0010 35 1 4.4122 -2.1888 0.9215 36 1 5.5645 -3.3079 0.1527 37 1 5.4166 -3.8600 2.5236 38 1 5.7308 -2.1642 2.9732 39 1 9.6080 -4.4222 4.3882 40 1 9.4926 -4.7947 2.6525 41 1 10.0995 -2.0887 3.9230 42 1 11.1889 -3.0798 2.9212 43 1 13.1228 -1.1208 2.4430 44 1 8.0576 -2.1983 -0.2992 45 1 8.1818 -0.4913 0.2010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074237691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:41 Heat of formation + Delta-G solvation = 30.536869 kcal Electronic energy + Delta-G solvation = -29442.533194 eV Core-core repulsion = 25462.433779 eV Total energy + Delta-G solvation = -3980.099415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.60238 -39.88491 -38.50693 -36.16717 -34.76142 -34.37704 -33.36426 -31.78133 -31.37329 -29.93188 -28.84471 -27.02756 -25.84281 -24.84035 -23.80928 -23.50990 -22.06508 -21.51064 -20.00368 -19.52843 -18.21322 -17.25510 -16.72465 -16.31819 -15.89517 -15.82755 -15.33761 -15.10264 -14.87334 -14.64823 -14.48684 -13.88766 -13.74159 -13.67116 -13.60111 -13.24458 -13.05293 -12.94164 -12.80702 -12.65280 -12.42412 -11.96171 -11.44981 -11.23531 -11.00036 -10.93171 -10.83704 -10.60119 -10.51205 -10.24189 -10.21751 -10.08528 -10.02942 -9.96663 -9.65609 -9.45669 -8.95343 -8.54564 -8.39489 -6.70460 -5.82708 -3.31712 0.19200 0.42438 2.54488 2.88575 3.33386 3.36331 3.42866 3.43920 3.57830 3.99635 4.16225 4.30091 4.37084 4.43843 4.55814 4.61736 5.02888 5.07852 5.09120 5.21480 5.33856 5.36625 5.42765 5.47589 5.52726 5.62322 5.69826 5.77391 5.81284 5.89765 5.98102 6.15517 6.16951 6.20717 6.32352 6.36871 6.50785 6.63013 6.68797 6.87496 7.17485 7.48201 7.56841 7.70375 7.94266 8.07587 8.27895 8.34710 9.11298 9.73113 10.31327 11.24557 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.003415 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.891518 B = 8197.908999 C = 9389.957091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.081 3.919 3 C -0.122 4.122 4 C -0.062 4.062 5 C 0.028 3.972 6 C 0.569 3.431 7 O -0.527 6.527 8 N -0.584 5.584 9 C 0.083 3.917 10 C -0.124 4.124 11 C 0.076 3.924 12 H 0.053 0.947 13 O -0.390 6.390 14 C 0.038 3.962 15 C 0.142 3.858 16 N -0.588 5.588 17 C -0.257 4.257 18 H 0.072 0.928 19 C 0.006 3.994 20 N -0.904 5.904 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.138 3.862 26 H 0.036 0.964 27 C 0.121 3.879 28 N -0.200 5.200 29 N -0.248 5.248 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.135 0.865 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.026 0.974 42 H 0.101 0.899 43 H 0.255 0.745 44 H 0.078 0.922 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.845 1.260 -2.420 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.062 4.062 3 C -0.151 4.151 4 C -0.091 4.091 5 C -0.117 4.117 6 C 0.353 3.647 7 O -0.403 6.403 8 N -0.315 5.315 9 C -0.040 4.040 10 C -0.163 4.163 11 C 0.016 3.984 12 H 0.071 0.929 13 O -0.309 6.309 14 C -0.040 4.040 15 C 0.017 3.983 16 N -0.313 5.313 17 C -0.386 4.386 18 H 0.089 0.911 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.735 3.265 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.030 3.970 26 H 0.054 0.946 27 C 0.000 4.000 28 N -0.046 5.046 29 N -0.092 5.092 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.175 0.825 34 H 0.181 0.819 35 H 0.151 0.849 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.119 0.881 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.415 0.144 -2.429 21.553 hybrid contribution 1.090 1.671 -0.754 2.133 sum -20.325 1.815 -3.184 20.652 Atomic orbital electron populations 1.20739 0.87101 1.04379 1.03880 1.23050 0.99295 0.90476 0.93419 1.22319 0.94195 1.00184 0.98354 1.22443 0.95075 0.99131 0.92435 1.22966 0.96658 0.92040 1.00081 1.17588 0.84953 0.83043 0.79073 1.90825 1.63549 1.37718 1.48168 1.48165 1.08220 1.13374 1.61783 1.22663 0.98143 0.88479 0.94726 1.21813 0.95043 1.02105 0.97336 1.22477 0.92790 0.96457 0.86642 0.92933 1.87743 1.25602 1.84832 1.32752 1.23356 0.81471 0.98831 1.00334 1.21499 0.98182 0.90506 0.88155 1.44001 1.00386 1.69446 1.17433 1.19145 0.91490 1.41011 0.86912 0.91080 1.25137 0.98673 0.99054 0.96373 1.69958 1.15379 1.51234 1.18301 0.86239 0.80266 0.78178 0.81778 1.21166 1.21526 1.20359 1.21279 0.87093 0.94234 0.94395 0.94599 1.21910 0.75814 1.04321 0.97982 1.73162 0.99374 1.25031 1.07035 1.73109 1.01322 1.24787 1.09988 0.89527 0.89607 0.90006 0.82518 0.81928 0.84903 0.90903 0.90121 0.91348 0.90145 0.94160 0.95551 0.88117 0.93458 0.90399 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.19 36.01 0.37 -0.11 16 2 C 0.08 0.69 6.87 -82.32 -0.57 0.12 16 3 C -0.12 -0.92 9.86 -39.24 -0.39 -1.31 16 4 C -0.06 -0.65 9.73 -38.82 -0.38 -1.03 16 5 C 0.03 0.38 6.54 -82.83 -0.54 -0.16 16 6 C 0.57 9.65 7.63 -12.18 -0.09 9.56 16 7 O -0.53 -10.40 15.98 5.36 0.09 -10.32 16 8 N -0.58 -9.97 2.99 -173.96 -0.52 -10.49 16 9 C 0.08 1.21 5.94 -3.90 -0.02 1.18 16 10 C -0.12 -1.91 5.80 -26.89 -0.16 -2.07 16 11 C 0.08 1.45 2.48 -26.63 -0.07 1.38 16 12 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 13 O -0.39 -7.96 10.49 -35.23 -0.37 -8.33 16 14 C 0.04 0.76 6.95 37.26 0.26 1.02 16 15 C 0.14 3.44 5.40 -3.47 -0.02 3.42 16 16 N -0.59 -14.79 3.04 -164.35 -0.50 -15.29 16 17 C -0.26 -6.89 8.87 -15.06 -0.13 -7.02 16 18 H 0.07 1.85 6.28 -52.48 -0.33 1.52 16 19 C 0.01 0.18 5.12 -17.43 -0.09 0.09 16 20 N -0.90 -25.94 10.89 55.49 0.60 -25.34 16 21 Si 0.91 21.65 29.56 -169.99 -5.03 16.62 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.14 3.00 3.03 -67.53 -0.20 2.80 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 27 C 0.12 2.43 4.50 -3.70 -0.02 2.41 16 28 N -0.20 -2.67 7.53 33.32 0.25 -2.42 16 29 N -0.25 -2.92 11.43 33.62 0.38 -2.53 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.21 8.09 -51.93 -0.42 -0.21 16 33 H 0.16 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.16 1.53 7.85 -52.49 -0.41 1.12 16 35 H 0.13 1.84 3.96 -123.84 -0.49 1.35 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.10 2.64 6.12 -51.93 -0.32 2.33 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.08 1.56 7.37 -51.93 -0.38 1.18 16 45 H 0.10 2.34 6.81 -51.93 -0.35 1.99 16 LS Contribution 356.38 15.07 5.37 5.37 Total: -1.00 -32.65 356.38 -8.26 -40.91 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.49 Total: 1.53 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -2.05 Total: 10.29 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.22 Total: -56.07 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.28 Total: -18.65 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.65 -8.26 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.447 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds