Wall clock time and date at job start Tue Mar 31 2020 17:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38574 * 119.96828 * 2 1 4 4 C 1.38817 * 118.07150 * 179.97438 * 3 2 1 5 5 C 1.39715 * 117.89823 * 359.97438 * 4 3 2 6 6 C 1.48161 * 120.18138 * 179.97438 * 5 4 3 7 7 O 1.21511 * 119.99780 * 339.23483 * 6 5 4 8 8 N 1.34778 * 119.99955 * 159.23562 * 6 5 4 9 9 C 1.46845 * 120.41090 * 0.38924 * 8 6 5 10 10 C 1.52902 * 109.49693 * 232.18920 * 9 8 6 11 11 C 1.52788 * 108.89443 * 306.41505 * 10 9 8 12 12 H 1.08998 * 109.34658 * 302.70068 * 11 10 9 13 13 O 1.42605 * 111.11206 * 182.39171 * 11 10 9 14 14 C 1.43149 * 113.63265 * 176.39046 * 13 11 10 15 15 C 1.53196 * 109.74404 * 61.68416 * 14 13 11 16 16 N 1.47360 * 108.79906 * 308.79252 * 15 14 13 17 17 C 1.36934 * 121.30132 * 230.26157 * 16 15 14 18 18 H 1.08004 * 119.99663 * 151.37210 * 17 16 15 19 19 C 1.38813 * 120.00134 * 331.36461 * 17 16 15 20 20 N 1.31614 * 119.99915 * 350.61969 * 19 17 16 21 21 Si 1.86800 * 119.99812 * 170.61449 * 19 17 16 22 22 H 1.48505 * 109.46837 * 90.00167 * 21 19 17 23 23 H 1.48502 * 109.47170 * 210.00037 * 21 19 17 24 24 H 1.48496 * 109.47393 * 330.00291 * 21 19 17 25 25 C 1.46871 * 117.38612 * 50.23911 * 16 15 14 26 26 H 1.08999 * 110.20792 * 67.97437 * 25 16 15 27 27 C 1.47128 * 120.41136 * 180.65851 * 8 6 5 28 28 N 1.32778 * 119.63608 * 359.97438 * 5 4 3 29 29 N 1.28352 * 122.02730 * 0.02562 * 28 5 4 30 30 H 1.08994 * 109.47048 * 90.00333 * 1 2 3 31 31 H 1.09005 * 109.46854 * 209.99880 * 1 2 3 32 32 H 1.08999 * 109.46962 * 329.99801 * 1 2 3 33 33 H 1.08000 * 120.96280 * 0.02562 * 3 2 1 34 34 H 1.08000 * 121.04998 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.50600 * 352.18114 * 9 8 6 36 36 H 1.09002 * 109.50672 * 112.31509 * 9 8 6 37 37 H 1.08998 * 109.65924 * 186.52258 * 10 9 8 38 38 H 1.09003 * 109.42620 * 66.17134 * 10 9 8 39 39 H 1.08997 * 109.42600 * 181.76535 * 14 13 11 40 40 H 1.09001 * 109.42224 * 301.60259 * 14 13 11 41 41 H 1.09000 * 109.58263 * 68.58868 * 15 14 13 42 42 H 1.08995 * 109.57904 * 188.86486 * 15 14 13 43 43 H 0.97006 * 119.99795 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.73156 * 246.43850 * 27 8 6 45 45 H 1.09001 * 109.72588 * 7.11045 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5866 1.1545 0.0005 5 6 4.1991 -0.1012 0.0016 6 6 5.6768 -0.2092 0.0017 7 8 6.3544 0.7276 -0.3723 8 7 6.2693 -1.3465 0.4164 9 6 5.4590 -2.4871 0.8621 10 6 5.9365 -2.9447 2.2407 11 6 7.4404 -3.2077 2.1812 12 1 7.6470 -3.9496 1.4099 13 8 7.9272 -3.6910 3.4313 14 6 9.3171 -4.0332 3.4124 15 6 10.1519 -2.7898 3.0901 16 7 9.6095 -2.1555 1.8756 17 6 10.4216 -1.8179 0.8260 18 1 10.0256 -1.7986 -0.1786 19 6 11.7537 -1.5005 1.0532 20 7 12.1919 -1.3430 2.2842 21 14 12.9244 -1.2970 -0.3882 22 1 12.9204 0.1199 -0.8328 23 1 14.2965 -1.6807 0.0305 24 1 12.4868 -2.1684 -1.5081 25 6 8.1638 -1.9000 1.8349 26 1 7.8969 -1.1304 2.5592 27 6 7.7362 -1.4584 0.4339 28 7 3.4497 -1.1973 0.0026 29 7 2.1672 -1.1450 0.0021 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6745 2.1444 0.0004 34 1 4.1740 2.0608 0.0010 35 1 4.4122 -2.1888 0.9215 36 1 5.5645 -3.3079 0.1527 37 1 5.4166 -3.8600 2.5236 38 1 5.7308 -2.1642 2.9732 39 1 9.6080 -4.4222 4.3882 40 1 9.4926 -4.7947 2.6525 41 1 10.0995 -2.0887 3.9230 42 1 11.1889 -3.0798 2.9212 43 1 13.1228 -1.1208 2.4430 44 1 8.0576 -2.1983 -0.2992 45 1 8.1818 -0.4913 0.2010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074237691.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:40 Heat of formation + Delta-G solvation = 7.793899 kcal Electronic energy + Delta-G solvation = -29443.519404 eV Core-core repulsion = 25462.433779 eV Total energy + Delta-G solvation = -3981.085625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.53308 -41.26177 -40.02949 -37.62748 -36.58405 -35.22426 -34.21351 -33.43858 -33.05533 -31.51383 -29.73842 -28.74748 -27.12173 -26.08583 -25.35704 -24.44603 -23.60249 -22.94745 -21.61845 -21.01675 -19.27974 -18.78254 -18.11060 -17.58514 -17.28955 -16.95600 -16.78747 -16.58717 -16.24209 -16.02158 -15.79353 -15.46356 -15.32305 -14.90965 -14.72088 -14.62881 -14.44915 -14.03387 -13.99270 -13.65801 -13.36643 -13.14324 -12.99984 -12.94432 -12.85202 -12.50113 -12.41208 -12.21319 -12.05029 -11.94286 -11.83643 -11.35285 -11.30999 -11.12201 -10.84228 -10.76051 -10.58451 -10.51838 -9.84934 -8.74581 -7.92102 -5.44693 -0.66519 -0.32950 1.41867 1.43993 1.45292 1.53978 1.61463 2.40498 2.44059 2.58571 2.88087 3.20929 3.24309 3.37034 3.41777 3.57821 3.75405 3.79161 3.97207 3.98636 4.04979 4.13316 4.18635 4.36541 4.49588 4.53396 4.54561 4.57196 4.65173 4.67836 4.81312 4.83000 4.89303 4.93456 4.99326 5.04722 5.08807 5.11783 5.24213 5.33332 5.41526 5.55137 5.59095 6.15186 6.23609 6.32723 6.77285 7.03331 7.41715 7.69042 8.25120 9.13361 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.003415 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.891518 B = 8197.908999 C = 9389.957091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.085 3.915 3 C -0.097 4.097 4 C -0.072 4.072 5 C 0.007 3.993 6 C 0.567 3.433 7 O -0.566 6.566 8 N -0.587 5.587 9 C 0.086 3.914 10 C -0.114 4.114 11 C 0.081 3.919 12 H 0.057 0.943 13 O -0.393 6.393 14 C 0.050 3.950 15 C 0.146 3.854 16 N -0.605 5.605 17 C -0.262 4.262 18 H 0.075 0.925 19 C -0.047 4.047 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.266 1.266 25 C 0.136 3.864 26 H 0.007 0.993 27 C 0.136 3.864 28 N -0.216 5.216 29 N -0.271 5.271 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.205 0.795 34 H 0.168 0.832 35 H 0.150 0.850 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.049 0.951 41 H -0.004 1.004 42 H 0.078 0.922 43 H 0.252 0.748 44 H 0.077 0.923 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.440 0.944 -3.166 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.058 4.058 3 C -0.126 4.126 4 C -0.101 4.101 5 C -0.139 4.139 6 C 0.353 3.647 7 O -0.445 6.445 8 N -0.318 5.318 9 C -0.035 4.035 10 C -0.153 4.153 11 C 0.022 3.978 12 H 0.074 0.926 13 O -0.312 6.312 14 C -0.028 4.028 15 C 0.021 3.979 16 N -0.330 5.330 17 C -0.391 4.391 18 H 0.093 0.907 19 C -0.242 4.242 20 N -0.582 5.582 21 Si 0.797 3.203 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.191 1.191 25 C 0.029 3.971 26 H 0.025 0.975 27 C 0.013 3.987 28 N -0.062 5.062 29 N -0.115 5.115 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.222 0.778 34 H 0.185 0.815 35 H 0.166 0.834 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.067 0.933 41 H 0.014 0.986 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.062 -0.204 -3.174 25.263 hybrid contribution 2.023 1.863 -0.519 2.799 sum -23.040 1.660 -3.693 23.393 Atomic orbital electron populations 1.20931 0.83921 1.05862 1.05230 1.23763 1.01213 0.89833 0.90953 1.22825 0.92660 1.01860 0.95246 1.22626 0.96701 0.98028 0.92698 1.22505 0.94407 0.93804 1.03173 1.18131 0.86644 0.82123 0.77820 1.90786 1.64993 1.38905 1.49781 1.48205 1.06928 1.14579 1.62098 1.22864 0.98410 0.87880 0.94383 1.21817 0.92387 1.03303 0.97777 1.22518 0.94636 0.94393 0.86271 0.92552 1.87750 1.25319 1.84657 1.33482 1.23225 0.80781 0.96581 1.02199 1.21355 0.98014 0.91616 0.86930 1.44278 1.01757 1.69764 1.17219 1.19459 0.91917 1.40090 0.87680 0.90737 1.25897 1.00239 0.99413 0.98683 1.70124 1.15355 1.52623 1.20085 0.85249 0.78110 0.77798 0.79174 1.21550 1.21456 1.19108 1.21382 0.85697 0.95349 0.94695 0.97499 1.21457 0.78127 1.02257 0.96811 1.72965 1.00333 1.25098 1.07762 1.73056 1.00458 1.26687 1.11289 0.87960 0.89732 0.86977 0.77776 0.81491 0.83406 0.89561 0.87111 0.92009 0.87257 0.93257 0.98583 0.90428 0.93889 0.90444 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.48 10.19 71.24 0.73 0.25 16 2 C 0.09 1.15 6.87 42.59 0.29 1.44 16 3 C -0.10 -1.09 9.86 22.49 0.22 -0.87 16 4 C -0.07 -1.40 9.73 22.77 0.22 -1.18 16 5 C 0.01 0.18 6.54 42.00 0.27 0.45 16 6 C 0.57 19.80 7.63 86.88 0.66 20.46 16 7 O -0.57 -23.52 15.98 -3.75 -0.06 -23.58 16 8 N -0.59 -20.52 2.99 -822.59 -2.46 -22.97 16 9 C 0.09 2.43 5.94 86.28 0.51 2.94 16 10 C -0.11 -3.36 5.80 30.49 0.18 -3.18 16 11 C 0.08 3.05 2.48 30.66 0.08 3.13 16 12 H 0.06 2.11 8.13 -2.39 -0.02 2.09 16 13 O -0.39 -15.68 10.49 -148.98 -1.56 -17.24 16 14 C 0.05 1.99 6.95 72.05 0.50 2.49 16 15 C 0.15 7.36 5.40 86.28 0.47 7.82 16 16 N -0.61 -31.64 3.04 -673.89 -2.05 -33.69 16 17 C -0.26 -14.55 8.87 84.03 0.75 -13.80 16 18 H 0.08 4.01 6.28 -2.91 -0.02 3.99 16 19 C -0.05 -2.65 5.12 84.86 0.43 -2.22 16 20 N -0.94 -55.86 10.89 21.65 0.24 -55.62 16 21 Si 0.97 45.64 29.56 68.60 2.03 47.67 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C 0.14 6.15 3.03 45.05 0.14 6.29 16 26 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 27 C 0.14 5.71 4.50 86.26 0.39 6.10 16 28 N -0.22 -5.48 7.53 -48.49 -0.37 -5.85 16 29 N -0.27 -5.76 11.43 -47.53 -0.54 -6.31 16 30 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.11 -0.09 8.09 -2.39 -0.02 -0.11 16 33 H 0.21 0.31 8.06 -2.91 -0.02 0.28 16 34 H 0.17 3.00 7.85 -2.91 -0.02 2.98 16 35 H 0.15 3.89 3.96 -95.40 -0.38 3.52 16 36 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.08 4.25 6.12 -2.39 -0.01 4.24 16 43 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 44 H 0.08 3.21 7.37 -2.39 -0.02 3.19 16 45 H 0.07 3.42 6.81 -2.39 -0.02 3.40 16 Total: -1.00 -75.64 356.38 1.71 -73.93 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.65 Total: 13.54 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 5.84 Total: 30.13 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -5.18 Total: -124.44 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -1.62 Total: -40.82 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.64 1.71 -73.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237691.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.724 kcal (2) G-P(sol) polarization free energy of solvation -75.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds