Wall clock time and date at job start Tue Mar 31 2020 17:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38569 * 119.97199 * 2 1 4 4 C 1.38814 * 118.07382 * 180.02562 * 3 2 1 5 5 C 1.39717 * 117.89861 * 0.02562 * 4 3 2 6 6 C 1.48158 * 120.18395 * 180.02562 * 5 4 3 7 7 O 1.21514 * 120.00053 * 335.12539 * 6 5 4 8 8 N 1.34776 * 119.99939 * 155.12025 * 6 5 4 9 9 C 1.46976 * 120.71915 * 182.07357 * 8 6 5 10 10 C 1.53715 * 107.46375 * 123.83218 * 9 8 6 11 11 C 1.52502 * 108.85101 * 56.79817 * 10 9 8 12 12 H 1.08998 * 108.40632 * 178.98710 * 11 10 9 13 13 O 1.42690 * 110.61922 * 59.61098 * 11 10 9 14 14 C 1.43081 * 113.86705 * 174.64520 * 13 11 10 15 15 C 1.53227 * 109.44561 * 61.65424 * 14 13 11 16 16 N 1.49272 * 109.26463 * 308.34332 * 15 14 13 17 17 C 1.36934 * 122.54025 * 231.30099 * 16 15 14 18 18 H 1.08001 * 120.00120 * 149.02731 * 17 16 15 19 19 C 1.38813 * 120.00059 * 329.01902 * 17 16 15 20 20 N 1.31623 * 120.00004 * 348.73951 * 19 17 16 21 21 Si 1.86800 * 120.00078 * 168.72599 * 19 17 16 22 22 H 1.48506 * 109.46733 * 94.99940 * 21 19 17 23 23 H 1.48501 * 109.47552 * 214.99848 * 21 19 17 24 24 H 1.48493 * 109.47365 * 335.00656 * 21 19 17 25 25 C 1.47591 * 116.22996 * 50.31851 * 16 15 14 26 26 H 1.08997 * 110.31675 * 187.65774 * 25 16 15 27 27 C 1.46792 * 120.71964 * 2.35768 * 8 6 5 28 28 N 1.32786 * 119.63731 * 0.02562 * 5 4 3 29 29 N 1.28351 * 122.02384 * 359.97438 * 28 5 4 30 30 H 1.09000 * 109.47004 * 89.99662 * 1 2 3 31 31 H 1.09004 * 109.47074 * 209.99861 * 1 2 3 32 32 H 1.09001 * 109.46678 * 329.99792 * 1 2 3 33 33 H 1.07997 * 120.96006 * 359.72794 * 3 2 1 34 34 H 1.07999 * 121.05611 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.64614 * 245.17439 * 9 8 6 36 36 H 1.09001 * 109.64370 * 5.80023 * 9 8 6 37 37 H 1.09001 * 111.26588 * 296.14118 * 10 9 8 38 38 H 1.09006 * 108.50343 * 175.78786 * 10 9 8 39 39 H 1.08999 * 109.47675 * 181.63973 * 14 13 11 40 40 H 1.09003 * 109.47760 * 301.66207 * 14 13 11 41 41 H 1.09000 * 109.59977 * 68.17799 * 15 14 13 42 42 H 1.08999 * 109.60136 * 188.65389 * 15 14 13 43 43 H 0.96998 * 120.00237 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.51947 * 354.17378 * 27 8 6 45 45 H 1.09003 * 109.52214 * 114.35705 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5866 1.1544 -0.0005 5 6 4.1991 -0.1014 -0.0016 6 6 5.6767 -0.2094 -0.0017 7 8 6.3524 0.6988 -0.4435 8 7 6.2715 -1.3151 0.4885 9 6 7.7367 -1.4202 0.5378 10 6 8.1299 -1.7049 1.9963 11 6 7.4156 -2.9695 2.4613 12 1 7.7134 -3.1746 3.4896 13 8 7.7787 -4.0812 1.6437 14 6 7.2423 -5.3295 2.0924 15 6 5.7116 -5.2671 2.0626 16 7 5.2539 -4.0500 2.7957 17 6 4.3074 -4.0980 3.7841 18 1 4.3420 -3.3907 4.5997 19 6 3.3034 -5.0554 3.7379 20 7 3.1245 -5.7692 2.6466 21 14 2.2064 -5.3310 5.2245 22 1 0.9632 -4.5322 5.0771 23 1 1.8602 -6.7717 5.3240 24 1 2.9235 -4.9081 6.4541 25 6 5.8965 -2.7777 2.4129 26 1 5.5941 -1.9814 3.0928 27 6 5.4701 -2.4429 0.9788 28 7 3.4496 -1.1975 -0.0026 29 7 2.1672 -1.1451 -0.0021 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6745 2.1443 -0.0044 34 1 4.1741 2.0606 -0.0010 35 1 8.0697 -2.2162 -0.1282 36 1 8.1825 -0.4732 0.2334 37 1 7.8582 -0.8747 2.6483 38 1 9.2079 -1.8608 2.0399 39 1 7.5862 -6.1294 1.4368 40 1 7.5783 -5.5244 3.1109 41 1 5.3677 -5.2177 1.0295 42 1 5.3001 -6.1535 2.5454 43 1 2.4232 -6.4385 2.6144 44 1 4.4144 -2.1721 0.9665 45 1 5.6321 -3.3103 0.3388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074237692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:45 Heat of formation + Delta-G solvation = 30.079017 kcal Electronic energy + Delta-G solvation = -30218.489788 eV Core-core repulsion = 26238.370519 eV Total energy + Delta-G solvation = -3980.119269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27855 -39.79234 -38.46589 -35.68457 -34.52460 -34.12045 -33.06337 -31.79528 -31.42385 -29.53818 -28.42275 -27.34594 -25.59170 -24.42444 -23.84848 -23.14115 -22.63253 -21.49267 -20.09033 -18.61328 -17.91628 -17.00147 -16.75002 -16.09820 -15.76723 -15.48643 -15.38201 -15.03278 -14.84329 -14.50351 -14.36953 -14.04667 -13.68365 -13.51551 -13.33709 -13.03454 -12.96328 -12.62201 -12.52888 -12.31146 -12.23300 -11.85933 -11.44906 -11.26960 -11.00821 -10.87591 -10.75078 -10.54853 -10.39789 -10.23426 -10.17494 -9.97764 -9.79476 -9.67386 -9.60701 -9.26354 -8.86233 -8.58405 -8.25676 -6.65185 -5.82799 -3.30265 0.52405 0.76561 2.73909 3.09006 3.33636 3.40731 3.42054 3.62272 3.93409 4.31196 4.36433 4.41466 4.48493 4.58063 4.83103 4.93022 5.11901 5.25936 5.30988 5.35098 5.39875 5.40956 5.56281 5.61148 5.72237 5.76337 5.80730 5.92472 5.93318 6.04179 6.08726 6.13945 6.14862 6.24253 6.32654 6.38793 6.48311 6.68803 6.93145 7.00656 7.14395 7.50614 7.65704 7.72888 7.92233 8.21226 8.33918 8.67855 9.08686 9.71264 10.34875 11.25790 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008827 B = 0.006108 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.446840 B = 4582.906217 C = 7131.050082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.080 3.920 3 C -0.127 4.127 4 C -0.067 4.067 5 C 0.017 3.983 6 C 0.573 3.427 7 O -0.550 6.550 8 N -0.581 5.581 9 C 0.117 3.883 10 C -0.121 4.121 11 C 0.078 3.922 12 H 0.049 0.951 13 O -0.386 6.386 14 C 0.040 3.960 15 C 0.136 3.864 16 N -0.581 5.581 17 C -0.255 4.255 18 H 0.064 0.936 19 C 0.013 3.987 20 N -0.894 5.894 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.132 3.868 26 H 0.067 0.933 27 C 0.073 3.927 28 N -0.181 5.181 29 N -0.235 5.235 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.034 0.966 42 H 0.091 0.909 43 H 0.255 0.745 44 H 0.132 0.868 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 11.498 -4.398 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.063 4.063 3 C -0.156 4.156 4 C -0.096 4.096 5 C -0.128 4.128 6 C 0.358 3.642 7 O -0.428 6.428 8 N -0.311 5.311 9 C -0.005 4.005 10 C -0.160 4.160 11 C 0.018 3.982 12 H 0.067 0.933 13 O -0.305 6.305 14 C -0.037 4.037 15 C 0.011 3.989 16 N -0.304 5.304 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.187 4.187 20 N -0.537 5.537 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.023 3.977 26 H 0.086 0.914 27 C -0.051 4.051 28 N -0.026 5.026 29 N -0.079 5.079 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.172 0.828 34 H 0.176 0.824 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.109 0.891 43 H 0.065 0.935 44 H 0.148 0.852 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.424 10.153 -4.792 11.317 hybrid contribution -0.783 1.132 1.073 1.745 sum 0.642 11.286 -3.719 11.900 Atomic orbital electron populations 1.20734 0.87297 1.04435 1.03668 1.23119 0.99365 0.90534 0.93265 1.22245 0.94197 0.99999 0.99159 1.22315 0.95035 0.98733 0.93506 1.22894 0.96624 0.92165 1.01138 1.17632 0.85224 0.82583 0.78791 1.90736 1.64055 1.39507 1.48505 1.48282 1.07590 1.16494 1.58726 1.21756 0.79168 1.02733 0.96861 1.21917 1.00685 0.96884 0.96503 1.22258 0.95697 0.86534 0.93675 0.93260 1.87726 1.73693 1.15789 1.53327 1.23292 0.97280 0.84866 0.98302 1.21786 0.88683 0.91997 0.96442 1.44564 1.44579 0.99309 1.41973 1.19028 1.03337 1.16781 0.99298 0.91841 1.25143 0.96576 1.00360 0.96656 1.69966 1.33119 1.25230 1.25355 0.86297 0.80785 0.77295 0.82464 1.21357 1.21469 1.20465 1.21594 0.91255 0.91019 0.93782 0.91436 1.23478 0.98142 0.87123 0.96385 1.73456 0.99370 1.24502 1.05287 1.73295 1.01276 1.24321 1.08959 0.89676 0.89397 0.90196 0.82816 0.82445 0.90008 0.89605 0.90275 0.90526 0.90031 0.94182 0.94743 0.89129 0.93466 0.85184 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.19 36.00 0.37 -0.58 16 2 C 0.08 1.06 6.87 -82.32 -0.57 0.49 16 3 C -0.13 -1.38 9.86 -39.25 -0.39 -1.77 16 4 C -0.07 -0.87 9.73 -38.82 -0.38 -1.25 16 5 C 0.02 0.29 6.50 -82.83 -0.54 -0.25 16 6 C 0.57 10.21 7.61 -12.19 -0.09 10.12 16 7 O -0.55 -10.24 16.08 5.35 0.09 -10.15 16 8 N -0.58 -10.37 2.93 -173.44 -0.51 -10.87 16 9 C 0.12 1.82 6.24 -3.41 -0.02 1.80 16 10 C -0.12 -1.79 5.88 -26.61 -0.16 -1.95 16 11 C 0.08 1.42 2.72 -26.89 -0.07 1.35 16 12 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 13 O -0.39 -7.33 9.50 -35.23 -0.33 -7.66 16 14 C 0.04 0.78 6.99 37.27 0.26 1.04 16 15 C 0.14 3.15 5.00 -2.39 -0.01 3.13 16 16 N -0.58 -14.17 2.77 -162.15 -0.45 -14.62 16 17 C -0.26 -6.83 9.71 -15.06 -0.15 -6.98 16 18 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 19 C 0.01 0.35 5.11 -17.43 -0.09 0.26 16 20 N -0.89 -25.25 11.24 55.49 0.62 -24.62 16 21 Si 0.90 21.33 29.57 -169.99 -5.03 16.31 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.13 2.78 2.96 -67.07 -0.20 2.58 16 26 H 0.07 1.45 7.99 -51.93 -0.42 1.04 16 27 C 0.07 1.48 5.25 -3.72 -0.02 1.46 16 28 N -0.18 -3.43 7.67 33.32 0.26 -3.18 16 29 N -0.23 -4.21 11.43 33.63 0.38 -3.82 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.16 1.70 7.90 -52.49 -0.41 1.28 16 35 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 36 H 0.09 1.27 7.02 -51.93 -0.36 0.90 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.85 7.15 -51.93 -0.37 0.48 16 42 H 0.09 2.31 6.44 -51.93 -0.33 1.97 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.13 2.91 3.96 -111.88 -0.44 2.46 16 45 H 0.07 1.66 6.55 -51.93 -0.34 1.32 16 LS Contribution 357.33 15.07 5.38 5.38 Total: -1.00 -31.96 357.33 -8.08 -40.04 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.44 Total: 3.75 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -2.05 Total: 9.45 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.31 Total: -57.12 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.25 Total: -17.81 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.96 -8.08 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.118 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds