Wall clock time and date at job start Tue Mar 31 2020 17:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38569 * 119.97199 * 2 1 4 4 C 1.38814 * 118.07382 * 180.02562 * 3 2 1 5 5 C 1.39717 * 117.89861 * 0.02562 * 4 3 2 6 6 C 1.48158 * 120.18395 * 180.02562 * 5 4 3 7 7 O 1.21514 * 120.00053 * 335.12539 * 6 5 4 8 8 N 1.34776 * 119.99939 * 155.12025 * 6 5 4 9 9 C 1.46976 * 120.71915 * 182.07357 * 8 6 5 10 10 C 1.53715 * 107.46375 * 123.83218 * 9 8 6 11 11 C 1.52502 * 108.85101 * 56.79817 * 10 9 8 12 12 H 1.08998 * 108.40632 * 178.98710 * 11 10 9 13 13 O 1.42690 * 110.61922 * 59.61098 * 11 10 9 14 14 C 1.43081 * 113.86705 * 174.64520 * 13 11 10 15 15 C 1.53227 * 109.44561 * 61.65424 * 14 13 11 16 16 N 1.49272 * 109.26463 * 308.34332 * 15 14 13 17 17 C 1.36934 * 122.54025 * 231.30099 * 16 15 14 18 18 H 1.08001 * 120.00120 * 149.02731 * 17 16 15 19 19 C 1.38813 * 120.00059 * 329.01902 * 17 16 15 20 20 N 1.31623 * 120.00004 * 348.73951 * 19 17 16 21 21 Si 1.86800 * 120.00078 * 168.72599 * 19 17 16 22 22 H 1.48506 * 109.46733 * 94.99940 * 21 19 17 23 23 H 1.48501 * 109.47552 * 214.99848 * 21 19 17 24 24 H 1.48493 * 109.47365 * 335.00656 * 21 19 17 25 25 C 1.47591 * 116.22996 * 50.31851 * 16 15 14 26 26 H 1.08997 * 110.31675 * 187.65774 * 25 16 15 27 27 C 1.46792 * 120.71964 * 2.35768 * 8 6 5 28 28 N 1.32786 * 119.63731 * 0.02562 * 5 4 3 29 29 N 1.28351 * 122.02384 * 359.97438 * 28 5 4 30 30 H 1.09000 * 109.47004 * 89.99662 * 1 2 3 31 31 H 1.09004 * 109.47074 * 209.99861 * 1 2 3 32 32 H 1.09001 * 109.46678 * 329.99792 * 1 2 3 33 33 H 1.07997 * 120.96006 * 359.72794 * 3 2 1 34 34 H 1.07999 * 121.05611 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.64614 * 245.17439 * 9 8 6 36 36 H 1.09001 * 109.64370 * 5.80023 * 9 8 6 37 37 H 1.09001 * 111.26588 * 296.14118 * 10 9 8 38 38 H 1.09006 * 108.50343 * 175.78786 * 10 9 8 39 39 H 1.08999 * 109.47675 * 181.63973 * 14 13 11 40 40 H 1.09003 * 109.47760 * 301.66207 * 14 13 11 41 41 H 1.09000 * 109.59977 * 68.17799 * 15 14 13 42 42 H 1.08999 * 109.60136 * 188.65389 * 15 14 13 43 43 H 0.96998 * 120.00237 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.51947 * 354.17378 * 27 8 6 45 45 H 1.09003 * 109.52214 * 114.35705 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5866 1.1544 -0.0005 5 6 4.1991 -0.1014 -0.0016 6 6 5.6767 -0.2094 -0.0017 7 8 6.3524 0.6988 -0.4435 8 7 6.2715 -1.3151 0.4885 9 6 7.7367 -1.4202 0.5378 10 6 8.1299 -1.7049 1.9963 11 6 7.4156 -2.9695 2.4613 12 1 7.7134 -3.1746 3.4896 13 8 7.7787 -4.0812 1.6437 14 6 7.2423 -5.3295 2.0924 15 6 5.7116 -5.2671 2.0626 16 7 5.2539 -4.0500 2.7957 17 6 4.3074 -4.0980 3.7841 18 1 4.3420 -3.3907 4.5997 19 6 3.3034 -5.0554 3.7379 20 7 3.1245 -5.7692 2.6466 21 14 2.2064 -5.3310 5.2245 22 1 0.9632 -4.5322 5.0771 23 1 1.8602 -6.7717 5.3240 24 1 2.9235 -4.9081 6.4541 25 6 5.8965 -2.7777 2.4129 26 1 5.5941 -1.9814 3.0928 27 6 5.4701 -2.4429 0.9788 28 7 3.4496 -1.1975 -0.0026 29 7 2.1672 -1.1451 -0.0021 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6745 2.1443 -0.0044 34 1 4.1741 2.0606 -0.0010 35 1 8.0697 -2.2162 -0.1282 36 1 8.1825 -0.4732 0.2334 37 1 7.8582 -0.8747 2.6483 38 1 9.2079 -1.8608 2.0399 39 1 7.5862 -6.1294 1.4368 40 1 7.5783 -5.5244 3.1109 41 1 5.3677 -5.2177 1.0295 42 1 5.3001 -6.1535 2.5454 43 1 2.4232 -6.4385 2.6144 44 1 4.4144 -2.1721 0.9665 45 1 5.6321 -3.3103 0.3388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074237692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:44 Heat of formation + Delta-G solvation = 8.367247 kcal Electronic energy + Delta-G solvation = -30219.431281 eV Core-core repulsion = 26238.370519 eV Total energy + Delta-G solvation = -3981.060762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.47361 -41.21033 -39.95919 -37.15183 -36.33262 -35.21741 -34.17288 -33.35161 -33.16892 -31.09262 -29.45240 -29.19572 -26.90128 -25.67299 -25.62382 -24.42676 -24.15244 -22.92377 -21.56590 -20.13478 -19.21547 -18.78875 -18.10774 -17.43993 -17.11282 -16.98566 -16.77816 -16.63214 -16.25017 -16.07552 -15.71866 -15.50140 -15.15238 -14.83921 -14.73910 -14.41664 -14.25441 -13.95685 -13.74949 -13.63648 -13.34885 -13.19985 -13.02612 -12.91497 -12.70607 -12.55033 -12.37282 -12.22476 -12.08718 -11.88874 -11.65208 -11.31191 -11.25473 -11.04620 -10.81171 -10.77937 -10.60701 -10.31849 -9.77666 -8.60515 -7.88711 -5.39297 -0.58711 -0.26320 1.43249 1.44275 1.45125 1.54135 1.77888 2.44720 2.46535 2.73911 2.88230 3.22497 3.28133 3.41519 3.52826 3.64768 3.79868 3.85659 3.99877 4.03503 4.17412 4.20866 4.31642 4.41252 4.49917 4.53432 4.56214 4.61472 4.64513 4.74311 4.82521 4.88911 4.89862 4.94912 4.98100 5.03021 5.17436 5.23018 5.28474 5.33827 5.53026 5.59316 5.60080 6.19399 6.30365 6.36498 6.83034 7.05227 7.53087 7.70934 8.33554 9.17577 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008827 B = 0.006108 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.446840 B = 4582.906217 C = 7131.050082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.076 3.924 3 C -0.101 4.101 4 C -0.067 4.067 5 C -0.008 4.008 6 C 0.573 3.427 7 O -0.558 6.558 8 N -0.583 5.583 9 C 0.114 3.886 10 C -0.111 4.111 11 C 0.082 3.918 12 H 0.049 0.951 13 O -0.384 6.384 14 C 0.052 3.948 15 C 0.144 3.856 16 N -0.598 5.598 17 C -0.264 4.264 18 H 0.062 0.938 19 C -0.037 4.037 20 N -0.924 5.924 21 Si 0.964 3.036 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.269 1.269 25 C 0.130 3.870 26 H 0.058 0.942 27 C 0.092 3.908 28 N -0.225 5.225 29 N -0.289 5.289 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.211 0.789 34 H 0.183 0.817 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.046 0.954 41 H 0.007 0.993 42 H 0.063 0.937 43 H 0.251 0.749 44 H 0.116 0.884 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.393 14.231 -3.929 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.068 4.068 3 C -0.130 4.130 4 C -0.096 4.096 5 C -0.154 4.154 6 C 0.359 3.641 7 O -0.437 6.437 8 N -0.314 5.314 9 C -0.007 4.007 10 C -0.149 4.149 11 C 0.022 3.978 12 H 0.067 0.933 13 O -0.303 6.303 14 C -0.025 4.025 15 C 0.020 3.980 16 N -0.322 5.322 17 C -0.394 4.394 18 H 0.079 0.921 19 C -0.234 4.234 20 N -0.569 5.569 21 Si 0.792 3.208 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.194 1.194 25 C 0.022 3.978 26 H 0.076 0.924 27 C -0.033 4.033 28 N -0.069 5.069 29 N -0.132 5.132 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.228 0.772 34 H 0.200 0.800 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.133 0.867 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.691 12.898 -4.324 13.708 hybrid contribution -0.943 0.405 0.865 1.342 sum 0.748 13.303 -3.459 13.766 Atomic orbital electron populations 1.20908 0.84474 1.05364 1.05151 1.23843 1.01211 0.90286 0.91456 1.22825 0.93237 1.01202 0.95696 1.22676 0.96341 0.97898 0.92666 1.22966 0.96028 0.93600 1.02814 1.17820 0.85890 0.82212 0.78160 1.90712 1.64525 1.39599 1.48879 1.48249 1.08381 1.15878 1.58851 1.21915 0.77807 1.03413 0.97539 1.21920 1.02036 0.95130 0.95806 1.22284 0.93719 0.87835 0.93948 0.93282 1.87742 1.73108 1.15805 1.53633 1.23156 0.93958 0.85931 0.99496 1.21603 0.91513 0.90691 0.94236 1.44736 1.44675 1.00930 1.41814 1.19289 1.03773 1.16482 0.99844 0.92057 1.25848 0.98002 1.00474 0.99087 1.70130 1.33726 1.25859 1.27150 0.85320 0.78861 0.76838 0.79761 1.21507 1.21519 1.19388 1.21711 0.93155 0.89324 0.93630 0.92381 1.22979 0.98001 0.86953 0.95415 1.73271 1.00301 1.26167 1.07180 1.73165 1.01138 1.27378 1.11480 0.87733 0.91286 0.86381 0.77219 0.79965 0.90237 0.88192 0.89057 0.87446 0.87306 0.93542 0.97534 0.91856 0.93999 0.86720 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.19 71.23 0.73 -0.90 16 2 C 0.08 1.89 6.87 42.58 0.29 2.19 16 3 C -0.10 -1.86 9.86 22.49 0.22 -1.64 16 4 C -0.07 -1.62 9.73 22.77 0.22 -1.39 16 5 C -0.01 -0.26 6.50 41.99 0.27 0.01 16 6 C 0.57 20.45 7.61 86.88 0.66 21.11 16 7 O -0.56 -20.19 16.08 -3.76 -0.06 -20.25 16 8 N -0.58 -21.03 2.93 -820.93 -2.41 -23.44 16 9 C 0.11 3.42 6.24 86.53 0.54 3.96 16 10 C -0.11 -3.03 5.88 30.67 0.18 -2.85 16 11 C 0.08 2.91 2.72 30.49 0.08 2.99 16 12 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 13 O -0.38 -14.27 9.50 -148.98 -1.42 -15.68 16 14 C 0.05 2.00 6.99 72.06 0.50 2.50 16 15 C 0.14 7.00 5.00 85.92 0.43 7.43 16 16 N -0.60 -30.28 2.77 -666.91 -1.85 -32.13 16 17 C -0.26 -14.60 9.71 84.03 0.82 -13.78 16 18 H 0.06 3.34 7.85 -2.91 -0.02 3.32 16 19 C -0.04 -2.08 5.11 84.86 0.43 -1.64 16 20 N -0.92 -54.62 11.24 21.65 0.24 -54.38 16 21 Si 0.96 44.89 29.57 68.60 2.03 46.92 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 C 0.13 5.59 2.96 44.95 0.13 5.73 16 26 H 0.06 2.57 7.99 -2.39 -0.02 2.55 16 27 C 0.09 3.92 5.25 86.43 0.45 4.37 16 28 N -0.22 -8.96 7.67 -48.48 -0.37 -9.33 16 29 N -0.29 -10.70 11.43 -47.53 -0.54 -11.25 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.12 1.00 8.09 -2.39 -0.02 0.98 16 33 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.18 3.36 7.90 -2.91 -0.02 3.34 16 35 H 0.08 2.42 7.89 -2.39 -0.02 2.40 16 36 H 0.10 2.74 7.02 -2.39 -0.02 2.73 16 37 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.01 0.35 7.15 -2.39 -0.02 0.33 16 42 H 0.06 3.39 6.44 -2.39 -0.02 3.37 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.12 5.47 3.96 -79.94 -0.32 5.15 16 45 H 0.05 2.22 6.55 -2.39 -0.02 2.21 16 Total: -1.00 -74.62 357.33 2.30 -72.31 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.71 Total: 19.14 kcal Atomic # 6 Polarization: 22.11 SS G_CDS: 5.97 Total: 28.08 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -4.93 Total: -130.52 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -1.48 Total: -35.93 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -74.62 2.30 -72.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.682 kcal (2) G-P(sol) polarization free energy of solvation -74.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds