Wall clock time and date at job start Tue Mar 31 2020 17:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38570 * 119.96546 * 2 1 4 4 C 1.38820 * 118.07019 * 179.97438 * 3 2 1 5 5 C 1.39722 * 117.89885 * 0.02562 * 4 3 2 6 6 C 1.48147 * 120.18382 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00180 * 338.94598 * 6 5 4 8 8 N 1.34780 * 120.00189 * 159.21674 * 6 5 4 9 9 C 1.46995 * 120.73945 * 0.22992 * 8 6 5 10 10 C 1.52712 * 108.68604 * 234.57557 * 9 8 6 11 11 C 1.52484 * 109.90390 * 305.72796 * 10 9 8 12 12 H 1.08994 * 108.33132 * 179.00867 * 11 10 9 13 13 O 1.42678 * 110.67523 * 298.31884 * 11 10 9 14 14 C 1.43087 * 113.87016 * 185.42367 * 13 11 10 15 15 C 1.53233 * 109.41443 * 298.31030 * 14 13 11 16 16 N 1.47171 * 108.70325 * 51.63603 * 15 14 13 17 17 C 1.36926 * 121.20517 * 129.07312 * 16 15 14 18 18 H 1.08010 * 119.99872 * 214.55351 * 17 16 15 19 19 C 1.38812 * 120.00734 * 34.56187 * 17 16 15 20 20 N 1.31623 * 119.99368 * 358.43998 * 19 17 16 21 21 Si 1.86797 * 120.00584 * 178.44378 * 19 17 16 22 22 H 1.48499 * 109.46893 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46910 * 119.99664 * 21 19 17 24 24 H 1.48498 * 109.46924 * 239.99661 * 21 19 17 25 25 C 1.47584 * 117.58549 * 309.09281 * 16 15 14 26 26 H 1.09001 * 110.28071 * 173.10159 * 25 16 15 27 27 C 1.46798 * 120.74522 * 180.50244 * 8 6 5 28 28 N 1.32781 * 119.63233 * 0.24381 * 5 4 3 29 29 N 1.28362 * 122.03025 * 359.44970 * 28 5 4 30 30 H 1.09004 * 109.47094 * 90.00106 * 1 2 3 31 31 H 1.09001 * 109.46918 * 209.99805 * 1 2 3 32 32 H 1.08998 * 109.47729 * 329.99815 * 1 2 3 33 33 H 1.07998 * 120.96589 * 0.02562 * 3 2 1 34 34 H 1.07999 * 121.04993 * 179.97438 * 4 3 2 35 35 H 1.09007 * 109.63766 * 354.30629 * 9 8 6 36 36 H 1.08997 * 109.63986 * 114.92928 * 9 8 6 37 37 H 1.08998 * 109.47797 * 185.52989 * 10 9 8 38 38 H 1.09005 * 109.27596 * 65.79856 * 10 9 8 39 39 H 1.08998 * 109.48176 * 178.32836 * 14 13 11 40 40 H 1.09001 * 109.49235 * 58.30049 * 14 13 11 41 41 H 1.08999 * 109.59509 * 291.86989 * 15 14 13 42 42 H 1.08996 * 109.59806 * 171.39820 * 15 14 13 43 43 H 0.96999 * 120.00229 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.53103 * 245.53022 * 27 8 6 45 45 H 1.09003 * 109.52165 * 5.72237 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1546 0.0005 5 6 4.1991 -0.1012 0.0005 6 6 5.6767 -0.2092 0.0005 7 8 6.3542 0.7260 -0.3775 8 7 6.2693 -1.3467 0.4146 9 6 5.4652 -2.4919 0.8649 10 6 5.9255 -2.8927 2.2648 11 6 7.4295 -3.1442 2.2645 12 1 7.7327 -3.4105 3.2770 13 8 7.7605 -4.2184 1.3857 14 6 9.1406 -4.5942 1.4247 15 6 10.0041 -3.4079 0.9830 16 7 9.6204 -2.2256 1.7708 17 6 10.5600 -1.4706 2.4205 18 1 10.3221 -1.0111 3.3686 19 6 11.8181 -1.2954 1.8607 20 7 12.1181 -1.8803 0.7204 21 14 13.0853 -0.2299 2.7256 22 1 12.5040 0.3101 3.9809 23 1 14.2833 -1.0469 3.0457 24 1 13.4757 0.8944 1.8375 25 6 8.1862 -1.8835 1.8356 26 1 8.0236 -1.0693 2.5418 27 6 7.7322 -1.4676 0.4318 28 7 3.4497 -1.1973 -0.0049 29 7 2.1671 -1.1450 0.0002 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6744 2.1444 0.0004 34 1 4.1739 2.0609 0.0002 35 1 4.4122 -2.2116 0.8933 36 1 5.6062 -3.3296 0.1820 37 1 5.4065 -3.8006 2.5720 38 1 5.6927 -2.0894 2.9639 39 1 9.3073 -5.4356 0.7522 40 1 9.4106 -4.8819 2.4408 41 1 9.8398 -3.2105 -0.0763 42 1 11.0557 -3.6369 1.1558 43 1 12.9973 -1.7584 0.3293 44 1 8.0439 -2.2221 -0.2904 45 1 8.1800 -0.5079 0.1735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074237693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:48 Heat of formation + Delta-G solvation = 29.029665 kcal Electronic energy + Delta-G solvation = -29581.394399 eV Core-core repulsion = 25601.229626 eV Total energy + Delta-G solvation = -3980.164773 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53235 -39.85089 -38.47053 -35.84225 -34.62705 -34.33786 -33.30779 -31.72833 -31.48517 -29.64639 -28.75788 -27.30431 -25.74542 -24.57179 -23.88482 -23.31140 -22.65067 -21.44590 -20.35370 -18.47087 -18.08538 -17.16105 -16.87028 -16.26619 -15.84677 -15.60942 -15.40043 -15.13150 -14.86167 -14.61266 -14.38611 -14.08919 -13.69541 -13.62883 -13.53755 -13.24072 -13.07132 -12.81244 -12.66121 -12.40196 -12.26806 -12.02967 -11.45104 -11.24410 -11.01433 -10.89502 -10.75932 -10.62616 -10.47353 -10.23081 -10.19541 -10.10099 -10.00654 -9.88605 -9.66145 -9.31450 -8.90643 -8.58780 -8.25669 -6.64368 -5.86857 -3.41173 0.25205 0.47277 2.62287 3.02258 3.33366 3.40348 3.41173 3.42645 3.66873 4.06207 4.21989 4.33566 4.41050 4.43647 4.61661 4.66646 5.05784 5.10958 5.15442 5.28579 5.34975 5.35420 5.45390 5.49392 5.63310 5.67750 5.75044 5.80198 5.85978 6.03401 6.08675 6.17723 6.19411 6.34605 6.40222 6.41460 6.52208 6.68832 6.75098 6.96399 7.16543 7.58646 7.66067 7.71186 7.96518 8.18178 8.35085 8.38825 9.11250 9.68273 10.30041 11.19088 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.003328 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.940877 B = 8410.535496 C = 9373.104849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.079 3.921 3 C -0.123 4.123 4 C -0.063 4.063 5 C 0.029 3.971 6 C 0.565 3.435 7 O -0.533 6.533 8 N -0.577 5.577 9 C 0.083 3.917 10 C -0.124 4.124 11 C 0.081 3.919 12 H 0.049 0.951 13 O -0.386 6.386 14 C 0.037 3.963 15 C 0.137 3.863 16 N -0.585 5.585 17 C -0.257 4.257 18 H 0.067 0.933 19 C 0.013 3.987 20 N -0.900 5.900 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.287 1.287 25 C 0.135 3.865 26 H 0.074 0.926 27 C 0.103 3.897 28 N -0.199 5.199 29 N -0.249 5.249 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.027 0.973 42 H 0.102 0.898 43 H 0.256 0.744 44 H 0.074 0.926 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.486 1.995 0.148 21.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.064 4.064 3 C -0.152 4.152 4 C -0.092 4.092 5 C -0.116 4.116 6 C 0.349 3.651 7 O -0.410 6.410 8 N -0.308 5.308 9 C -0.040 4.040 10 C -0.163 4.163 11 C 0.022 3.978 12 H 0.067 0.933 13 O -0.305 6.305 14 C -0.041 4.041 15 C 0.011 3.989 16 N -0.308 5.308 17 C -0.387 4.387 18 H 0.084 0.916 19 C -0.187 4.187 20 N -0.544 5.544 21 Si 0.735 3.265 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.214 1.214 25 C 0.026 3.974 26 H 0.093 0.907 27 C -0.020 4.020 28 N -0.044 5.044 29 N -0.093 5.093 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.174 0.826 34 H 0.180 0.820 35 H 0.145 0.855 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.120 0.880 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.058 0.763 -0.262 21.073 hybrid contribution 1.158 2.173 0.491 2.511 sum -19.900 2.936 0.230 20.116 Atomic orbital electron populations 1.20731 0.87174 1.04305 1.03844 1.23039 0.99254 0.90516 0.93622 1.22304 0.94213 1.00133 0.98500 1.22443 0.95039 0.99160 0.92593 1.23035 0.96836 0.91934 0.99806 1.17618 0.84845 0.83317 0.79362 1.90811 1.63549 1.38092 1.48529 1.48206 1.08507 1.13008 1.61101 1.22604 0.97726 0.88561 0.95094 1.21762 0.95136 1.01701 0.97677 1.22181 0.93621 0.88949 0.93075 0.93253 1.87732 1.26754 1.51708 1.64319 1.23384 0.81867 0.98801 1.00039 1.21567 0.99380 0.84221 0.93696 1.44195 0.99823 1.27958 1.58778 1.19161 0.92682 1.26420 1.00392 0.91583 1.25343 0.99260 0.98409 0.95653 1.69909 1.21281 1.44620 1.18547 0.86169 0.81095 0.80349 0.78867 1.20164 1.21553 1.21356 1.21618 0.86577 0.94718 0.94456 0.90749 1.22464 0.75834 1.03310 1.00400 1.73206 0.99264 1.24993 1.06962 1.73126 1.01421 1.24756 1.09954 0.89570 0.89650 0.90072 0.82609 0.82014 0.85507 0.90381 0.90325 0.91019 0.90214 0.94242 0.95446 0.88019 0.93352 0.90802 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 10.19 36.01 0.37 -0.14 16 2 C 0.08 0.70 6.87 -82.32 -0.57 0.14 16 3 C -0.12 -0.97 9.86 -39.24 -0.39 -1.36 16 4 C -0.06 -0.69 9.73 -38.81 -0.38 -1.07 16 5 C 0.03 0.42 6.55 -82.83 -0.54 -0.12 16 6 C 0.56 9.98 7.63 -12.19 -0.09 9.88 16 7 O -0.53 -10.95 16.00 5.35 0.09 -10.86 16 8 N -0.58 -10.34 2.97 -174.04 -0.52 -10.85 16 9 C 0.08 1.29 5.85 -3.92 -0.02 1.27 16 10 C -0.12 -1.86 5.80 -27.14 -0.16 -2.02 16 11 C 0.08 1.50 2.71 -26.91 -0.07 1.43 16 12 H 0.05 0.94 8.13 -51.93 -0.42 0.51 16 13 O -0.39 -7.50 9.63 -35.23 -0.34 -7.84 16 14 C 0.04 0.73 6.98 37.28 0.26 0.99 16 15 C 0.14 3.23 4.87 -3.56 -0.02 3.21 16 16 N -0.59 -14.46 2.71 -163.90 -0.44 -14.90 16 17 C -0.26 -6.94 9.65 -15.06 -0.15 -7.08 16 18 H 0.07 1.77 7.83 -52.48 -0.41 1.35 16 19 C 0.01 0.35 5.29 -17.43 -0.09 0.26 16 20 N -0.90 -25.49 10.77 55.49 0.60 -24.89 16 21 Si 0.91 21.51 29.55 -169.99 -5.02 16.48 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.13 2.87 3.02 -67.10 -0.20 2.67 16 26 H 0.07 1.61 7.99 -51.93 -0.41 1.20 16 27 C 0.10 2.17 5.63 -3.72 -0.02 2.15 16 28 N -0.20 -2.78 7.56 33.32 0.25 -2.52 16 29 N -0.25 -3.05 11.43 33.62 0.38 -2.66 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 33 H 0.16 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.16 1.59 7.86 -52.49 -0.41 1.17 16 35 H 0.13 1.85 3.94 -122.36 -0.48 1.37 16 36 H 0.08 1.27 7.96 -51.93 -0.41 0.85 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.69 7.18 -51.93 -0.37 0.32 16 42 H 0.10 2.65 6.17 -51.93 -0.32 2.33 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 44 H 0.07 1.65 6.59 -51.93 -0.34 1.31 16 45 H 0.09 2.14 7.00 -51.93 -0.36 1.78 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -31.97 356.51 -8.17 -40.14 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.47 Total: 2.33 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -2.07 Total: 10.20 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: 0.27 Total: -55.83 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.25 Total: -18.70 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.97 -8.17 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.170 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds