Wall clock time and date at job start Tue Mar 31 2020 17:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38570 * 119.96546 * 2 1 4 4 C 1.38820 * 118.07019 * 179.97438 * 3 2 1 5 5 C 1.39722 * 117.89885 * 0.02562 * 4 3 2 6 6 C 1.48147 * 120.18382 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00180 * 338.94598 * 6 5 4 8 8 N 1.34780 * 120.00189 * 159.21674 * 6 5 4 9 9 C 1.46995 * 120.73945 * 0.22992 * 8 6 5 10 10 C 1.52712 * 108.68604 * 234.57557 * 9 8 6 11 11 C 1.52484 * 109.90390 * 305.72796 * 10 9 8 12 12 H 1.08994 * 108.33132 * 179.00867 * 11 10 9 13 13 O 1.42678 * 110.67523 * 298.31884 * 11 10 9 14 14 C 1.43087 * 113.87016 * 185.42367 * 13 11 10 15 15 C 1.53233 * 109.41443 * 298.31030 * 14 13 11 16 16 N 1.47171 * 108.70325 * 51.63603 * 15 14 13 17 17 C 1.36926 * 121.20517 * 129.07312 * 16 15 14 18 18 H 1.08010 * 119.99872 * 214.55351 * 17 16 15 19 19 C 1.38812 * 120.00734 * 34.56187 * 17 16 15 20 20 N 1.31623 * 119.99368 * 358.43998 * 19 17 16 21 21 Si 1.86797 * 120.00584 * 178.44378 * 19 17 16 22 22 H 1.48499 * 109.46893 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46910 * 119.99664 * 21 19 17 24 24 H 1.48498 * 109.46924 * 239.99661 * 21 19 17 25 25 C 1.47584 * 117.58549 * 309.09281 * 16 15 14 26 26 H 1.09001 * 110.28071 * 173.10159 * 25 16 15 27 27 C 1.46798 * 120.74522 * 180.50244 * 8 6 5 28 28 N 1.32781 * 119.63233 * 0.24381 * 5 4 3 29 29 N 1.28362 * 122.03025 * 359.44970 * 28 5 4 30 30 H 1.09004 * 109.47094 * 90.00106 * 1 2 3 31 31 H 1.09001 * 109.46918 * 209.99805 * 1 2 3 32 32 H 1.08998 * 109.47729 * 329.99815 * 1 2 3 33 33 H 1.07998 * 120.96589 * 0.02562 * 3 2 1 34 34 H 1.07999 * 121.04993 * 179.97438 * 4 3 2 35 35 H 1.09007 * 109.63766 * 354.30629 * 9 8 6 36 36 H 1.08997 * 109.63986 * 114.92928 * 9 8 6 37 37 H 1.08998 * 109.47797 * 185.52989 * 10 9 8 38 38 H 1.09005 * 109.27596 * 65.79856 * 10 9 8 39 39 H 1.08998 * 109.48176 * 178.32836 * 14 13 11 40 40 H 1.09001 * 109.49235 * 58.30049 * 14 13 11 41 41 H 1.08999 * 109.59509 * 291.86989 * 15 14 13 42 42 H 1.08996 * 109.59806 * 171.39820 * 15 14 13 43 43 H 0.96999 * 120.00229 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.53103 * 245.53022 * 27 8 6 45 45 H 1.09003 * 109.52165 * 5.72237 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1546 0.0005 5 6 4.1991 -0.1012 0.0005 6 6 5.6767 -0.2092 0.0005 7 8 6.3542 0.7260 -0.3775 8 7 6.2693 -1.3467 0.4146 9 6 5.4652 -2.4919 0.8649 10 6 5.9255 -2.8927 2.2648 11 6 7.4295 -3.1442 2.2645 12 1 7.7327 -3.4105 3.2770 13 8 7.7605 -4.2184 1.3857 14 6 9.1406 -4.5942 1.4247 15 6 10.0041 -3.4079 0.9830 16 7 9.6204 -2.2256 1.7708 17 6 10.5600 -1.4706 2.4205 18 1 10.3221 -1.0111 3.3686 19 6 11.8181 -1.2954 1.8607 20 7 12.1181 -1.8803 0.7204 21 14 13.0853 -0.2299 2.7256 22 1 12.5040 0.3101 3.9809 23 1 14.2833 -1.0469 3.0457 24 1 13.4757 0.8944 1.8375 25 6 8.1862 -1.8835 1.8356 26 1 8.0236 -1.0693 2.5418 27 6 7.7322 -1.4676 0.4318 28 7 3.4497 -1.1973 -0.0049 29 7 2.1671 -1.1450 0.0002 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6744 2.1444 0.0004 34 1 4.1739 2.0609 0.0002 35 1 4.4122 -2.2116 0.8933 36 1 5.6062 -3.3296 0.1820 37 1 5.4065 -3.8006 2.5720 38 1 5.6927 -2.0894 2.9639 39 1 9.3073 -5.4356 0.7522 40 1 9.4106 -4.8819 2.4408 41 1 9.8398 -3.2105 -0.0763 42 1 11.0557 -3.6369 1.1558 43 1 12.9973 -1.7584 0.3293 44 1 8.0439 -2.2221 -0.2904 45 1 8.1800 -0.5079 0.1735 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074237693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:47 Heat of formation + Delta-G solvation = 7.257977 kcal Electronic energy + Delta-G solvation = -29582.338490 eV Core-core repulsion = 25601.229626 eV Total energy + Delta-G solvation = -3981.108864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.50533 -41.27740 -39.98159 -37.33103 -36.46016 -35.18120 -34.19647 -33.45156 -33.12421 -31.18094 -29.78974 -28.95301 -26.94238 -25.77556 -25.54805 -24.56970 -23.99516 -22.96280 -21.75166 -20.03873 -19.25158 -18.86480 -18.19486 -17.40143 -17.19217 -17.00306 -16.84712 -16.64646 -16.17091 -16.11261 -15.66978 -15.49910 -15.29841 -14.91129 -14.70164 -14.47487 -14.26628 -14.01162 -13.90161 -13.68070 -13.40780 -13.14695 -12.98983 -12.93709 -12.76116 -12.58582 -12.32633 -12.22382 -12.04762 -11.92551 -11.82075 -11.34547 -11.29186 -11.07436 -10.82543 -10.69193 -10.58847 -10.44946 -9.80630 -8.62966 -7.94092 -5.52335 -0.64623 -0.31618 1.41313 1.44565 1.45621 1.54130 1.69932 2.41336 2.43537 2.68428 2.88709 3.21994 3.24459 3.38836 3.46534 3.59804 3.78056 3.82509 3.99431 4.08030 4.11068 4.17916 4.24515 4.43131 4.53985 4.55082 4.58437 4.60920 4.67562 4.81728 4.84909 4.85337 4.91081 4.93473 5.00605 5.05632 5.11459 5.20176 5.29529 5.34627 5.46355 5.57134 5.62845 6.25509 6.28763 6.37904 6.82612 7.05446 7.43717 7.67145 8.26036 9.09347 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.003328 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.940877 B = 8410.535496 C = 9373.104849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.084 3.916 3 C -0.097 4.097 4 C -0.072 4.072 5 C 0.008 3.992 6 C 0.563 3.437 7 O -0.573 6.573 8 N -0.581 5.581 9 C 0.086 3.914 10 C -0.116 4.116 11 C 0.086 3.914 12 H 0.051 0.949 13 O -0.384 6.384 14 C 0.049 3.951 15 C 0.144 3.856 16 N -0.602 5.602 17 C -0.269 4.269 18 H 0.066 0.934 19 C -0.039 4.039 20 N -0.929 5.929 21 Si 0.970 3.030 22 H -0.266 1.266 23 H -0.285 1.285 24 H -0.293 1.293 25 C 0.134 3.866 26 H 0.066 0.934 27 C 0.122 3.878 28 N -0.217 5.217 29 N -0.272 5.272 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.206 0.794 34 H 0.168 0.832 35 H 0.146 0.854 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.046 0.954 41 H 0.000 1.000 42 H 0.075 0.925 43 H 0.253 0.747 44 H 0.053 0.947 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.234 2.551 1.316 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.059 4.059 3 C -0.125 4.125 4 C -0.100 4.100 5 C -0.137 4.137 6 C 0.349 3.651 7 O -0.452 6.452 8 N -0.311 5.311 9 C -0.035 4.035 10 C -0.154 4.154 11 C 0.027 3.973 12 H 0.069 0.931 13 O -0.303 6.303 14 C -0.029 4.029 15 C 0.019 3.981 16 N -0.326 5.326 17 C -0.399 4.399 18 H 0.083 0.917 19 C -0.235 4.235 20 N -0.574 5.574 21 Si 0.798 3.202 22 H -0.190 1.190 23 H -0.211 1.211 24 H -0.220 1.220 25 C 0.027 3.973 26 H 0.085 0.915 27 C -0.003 4.003 28 N -0.063 5.063 29 N -0.116 5.116 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.223 0.777 34 H 0.185 0.815 35 H 0.163 0.837 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.064 0.936 41 H 0.018 0.982 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.859 1.292 0.925 24.910 hybrid contribution 2.129 2.074 0.073 2.973 sum -22.730 3.366 0.998 23.000 Atomic orbital electron populations 1.20928 0.83907 1.05883 1.05184 1.23771 1.01216 0.89851 0.91033 1.22822 0.92628 1.01835 0.95256 1.22623 0.96691 0.97964 0.92767 1.22523 0.94405 0.93774 1.03039 1.18172 0.86650 0.82333 0.77970 1.90773 1.65074 1.39331 1.50048 1.48204 1.07105 1.14257 1.61555 1.22764 0.98340 0.87331 0.95113 1.21790 0.92405 1.03572 0.97648 1.22205 0.95580 0.86891 0.92656 0.93071 1.87750 1.26188 1.51718 1.64684 1.23230 0.81278 0.97506 1.00861 1.21362 0.98815 0.85665 0.92241 1.44396 1.00990 1.28494 1.58693 1.19433 0.93460 1.26321 1.00659 0.91657 1.26071 1.01229 0.99687 0.96525 1.70081 1.21466 1.45835 1.19972 0.85169 0.78722 0.78359 0.77988 1.19044 1.21120 1.21987 1.21720 0.85235 0.96223 0.94170 0.91548 1.21906 0.78256 1.00416 0.99732 1.72995 1.00324 1.25168 1.07802 1.73074 1.00465 1.26740 1.11301 0.88063 0.89739 0.86894 0.77717 0.81476 0.83739 0.91146 0.87386 0.89626 0.87535 0.93597 0.98170 0.90715 0.93773 0.92848 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 10.19 71.24 0.73 0.21 16 2 C 0.08 1.18 6.87 42.59 0.29 1.48 16 3 C -0.10 -1.13 9.86 22.49 0.22 -0.91 16 4 C -0.07 -1.44 9.73 22.77 0.22 -1.22 16 5 C 0.01 0.23 6.55 41.99 0.28 0.50 16 6 C 0.56 20.61 7.63 86.88 0.66 21.27 16 7 O -0.57 -24.86 16.00 -3.75 -0.06 -24.92 16 8 N -0.58 -21.53 2.97 -822.84 -2.44 -23.97 16 9 C 0.09 2.63 5.85 86.19 0.50 3.13 16 10 C -0.12 -3.27 5.80 30.33 0.18 -3.09 16 11 C 0.09 3.13 2.71 30.48 0.08 3.22 16 12 H 0.05 1.87 8.13 -2.39 -0.02 1.85 16 13 O -0.38 -14.68 9.63 -148.98 -1.43 -16.12 16 14 C 0.05 1.92 6.98 72.06 0.50 2.43 16 15 C 0.14 7.13 4.87 86.33 0.42 7.55 16 16 N -0.60 -31.02 2.71 -672.46 -1.82 -32.84 16 17 C -0.27 -15.01 9.65 84.04 0.81 -14.20 16 18 H 0.07 3.58 7.83 -2.91 -0.02 3.55 16 19 C -0.04 -2.18 5.29 84.86 0.45 -1.73 16 20 N -0.93 -54.94 10.77 21.65 0.23 -54.70 16 21 Si 0.97 45.38 29.55 68.60 2.03 47.40 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 25 C 0.13 5.92 3.02 44.94 0.14 6.05 16 26 H 0.07 2.99 7.99 -2.39 -0.02 2.97 16 27 C 0.12 5.44 5.63 86.42 0.49 5.93 16 28 N -0.22 -5.84 7.56 -48.49 -0.37 -6.21 16 29 N -0.27 -6.06 11.43 -47.53 -0.54 -6.60 16 30 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 -0.07 8.09 -2.39 -0.02 -0.09 16 33 H 0.21 0.35 8.06 -2.91 -0.02 0.33 16 34 H 0.17 3.08 7.86 -2.91 -0.02 3.06 16 35 H 0.15 4.06 3.94 -93.49 -0.37 3.69 16 36 H 0.07 2.25 7.96 -2.39 -0.02 2.23 16 37 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.00 0.01 7.18 -2.39 -0.02 -0.01 16 42 H 0.07 4.09 6.17 -2.39 -0.01 4.07 16 43 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.05 2.57 6.59 -2.39 -0.02 2.56 16 45 H 0.05 2.72 7.00 -2.39 -0.02 2.70 16 Total: -1.00 -74.80 356.51 2.22 -72.59 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.65 Total: 14.73 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: 5.97 Total: 30.63 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -4.94 Total: -124.32 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.49 Total: -41.04 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.80 2.22 -72.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.846 kcal (2) G-P(sol) polarization free energy of solvation -74.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds