Wall clock time and date at job start Tue Mar 31 2020 17:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31920 * 120.16925 * 2 1 4 4 N 1.28279 * 122.32888 * 179.97438 * 3 2 1 5 5 C 1.31922 * 122.51117 * 359.97438 * 4 3 2 6 6 C 1.38500 * 119.96950 * 359.72333 * 5 4 3 7 7 C 1.39725 * 120.17390 * 179.97438 * 2 1 3 8 8 C 1.48132 * 121.14510 * 0.02562 * 7 2 1 9 9 O 1.21515 * 120.00371 * 306.64063 * 8 7 2 10 10 N 1.34779 * 119.99980 * 126.64670 * 8 7 2 11 11 C 1.46847 * 120.40908 * 354.07535 * 10 8 7 12 12 C 1.51966 * 109.38106 * 231.93570 * 11 10 8 13 13 C 1.52791 * 109.55257 * 306.69783 * 12 11 10 14 14 H 1.08997 * 108.96342 * 302.42810 * 13 12 11 15 15 O 1.42603 * 111.10497 * 181.89536 * 13 12 11 16 16 C 1.43153 * 113.62916 * 176.38805 * 15 13 12 17 17 C 1.53190 * 109.74025 * 61.68957 * 16 15 13 18 18 N 1.47350 * 108.80148 * 308.78465 * 17 16 15 19 19 C 1.36936 * 121.30932 * 230.21969 * 18 17 16 20 20 H 1.08002 * 120.00107 * 145.06517 * 19 18 17 21 21 C 1.38808 * 119.99939 * 325.07173 * 19 18 17 22 22 N 1.31612 * 119.99908 * 4.31832 * 21 19 18 23 23 Si 1.86806 * 119.99918 * 184.32480 * 21 19 18 24 24 H 1.48493 * 109.47058 * 59.99507 * 23 21 19 25 25 H 1.48498 * 109.47131 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46710 * 299.99573 * 23 21 19 27 27 C 1.46881 * 117.38697 * 50.24578 * 18 17 16 28 28 H 1.08995 * 109.65551 * 67.64803 * 27 18 17 29 29 C 1.47127 * 120.41350 * 174.11052 * 10 8 7 30 30 H 1.08998 * 109.47080 * 274.87346 * 1 2 3 31 31 H 1.09000 * 109.47248 * 34.87901 * 1 2 3 32 32 H 1.09011 * 109.46792 * 154.87748 * 1 2 3 33 33 H 1.08002 * 120.01073 * 180.02562 * 5 4 3 34 34 H 1.08007 * 121.09028 * 180.30722 * 6 5 4 35 35 H 1.09002 * 109.50673 * 352.21401 * 11 10 8 36 36 H 1.09005 * 109.50181 * 112.30306 * 11 10 8 37 37 H 1.08995 * 109.72882 * 186.34970 * 12 11 10 38 38 H 1.08996 * 108.68965 * 66.40434 * 12 11 10 39 39 H 1.08996 * 109.42724 * 181.77674 * 16 15 13 40 40 H 1.09004 * 109.42408 * 301.60759 * 16 15 13 41 41 H 1.09005 * 109.58235 * 188.99305 * 17 16 15 42 42 H 1.08999 * 109.58373 * 68.58556 * 17 16 15 43 43 H 0.97010 * 119.99998 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.72675 * 7.07209 * 29 10 8 45 45 H 1.09004 * 109.72226 * 246.41033 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1405 0.0000 4 7 3.4518 1.1888 0.0005 5 6 4.2023 0.1039 0.0015 6 6 3.6091 -1.1477 0.0079 7 6 2.2093 -1.2079 0.0005 8 6 1.4984 -2.5075 0.0006 9 8 0.6554 -2.7390 0.8446 10 7 1.7865 -3.4333 -0.9356 11 6 2.7070 -3.1170 -2.0352 12 6 2.0482 -3.4637 -3.3600 13 6 1.5624 -4.9119 -3.3259 14 1 2.4093 -5.5647 -3.1147 15 8 0.9763 -5.2864 -4.5709 16 6 0.5759 -6.6596 -4.6266 17 6 -0.4921 -6.9307 -3.5623 18 7 -0.0042 -6.4356 -2.2630 19 6 -0.0343 -7.2244 -1.1441 20 1 0.7518 -7.1470 -0.4075 21 6 -1.0751 -8.1235 -0.9566 22 7 -1.9869 -8.2792 -1.8928 23 14 -1.1816 -9.1123 0.6247 24 1 -1.2943 -8.1869 1.7805 25 1 -2.3762 -9.9932 0.5782 26 1 0.0407 -9.9425 0.7726 27 6 0.5152 -5.0625 -2.2151 28 1 -0.2987 -4.3567 -2.3802 29 6 1.1821 -4.7730 -0.8691 30 1 -0.3633 0.0873 1.0239 31 1 -0.3634 0.8430 -0.5877 32 1 -0.3633 -0.9306 -0.4364 33 1 5.2787 0.1916 0.0023 34 1 4.2060 -2.0478 0.0138 35 1 2.9502 -2.0547 -2.0121 36 1 3.6202 -3.7020 -1.9250 37 1 2.7649 -3.3378 -4.1714 38 1 1.1994 -2.7972 -3.5130 39 1 0.1681 -6.8786 -5.6134 40 1 1.4407 -7.2972 -4.4430 41 1 -0.6797 -8.0026 -3.4977 42 1 -1.4131 -6.4121 -3.8285 43 1 -2.7144 -8.9073 -1.7617 44 1 0.4358 -4.8010 -0.0751 45 1 1.9554 -5.5161 -0.6741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074286767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:55 Heat of formation + Delta-G solvation = 17.142309 kcal Electronic energy + Delta-G solvation = -29827.062641 eV Core-core repulsion = 25846.382394 eV Total energy + Delta-G solvation = -3980.680247 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61429 -40.07722 -38.64535 -36.33376 -34.80239 -34.08213 -33.63780 -31.81335 -31.53571 -30.00600 -28.59457 -27.28031 -26.23066 -24.69504 -24.06290 -23.29112 -22.19695 -21.60325 -19.94443 -19.59684 -18.11967 -17.56304 -16.95228 -16.42611 -15.96600 -15.65792 -15.46600 -15.21239 -15.06705 -14.92842 -14.49676 -14.05456 -13.80583 -13.68633 -13.50033 -13.18586 -13.11021 -12.95111 -12.74976 -12.72205 -12.44633 -12.02716 -11.43927 -11.26563 -11.16523 -10.99880 -10.94406 -10.72743 -10.56960 -10.38374 -10.33889 -10.26056 -10.15755 -9.98956 -9.73133 -9.66335 -9.05793 -8.65107 -8.54107 -6.70979 -5.92817 -3.47511 0.18547 0.55947 2.42396 2.76986 3.23107 3.30837 3.36922 3.38705 3.70945 3.97512 4.07316 4.18977 4.22035 4.34440 4.50206 4.70948 4.91523 5.00506 5.16967 5.19620 5.21125 5.25578 5.32510 5.38477 5.45336 5.56089 5.63717 5.65023 5.73210 5.78628 5.81372 5.99657 6.01651 6.03855 6.15465 6.26877 6.35271 6.49896 6.53419 6.75943 7.10440 7.27122 7.53064 7.62923 7.83819 7.96482 8.31438 8.38064 9.04328 9.63291 10.24557 11.13646 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015047 B = 0.003821 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.382783 B = 7326.047858 C = 8383.655313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.115 3.885 3 N -0.242 5.242 4 N -0.230 5.230 5 C 0.030 3.970 6 C -0.085 4.085 7 C -0.117 4.117 8 C 0.561 3.439 9 O -0.513 6.513 10 N -0.599 5.599 11 C 0.109 3.891 12 C -0.126 4.126 13 C 0.078 3.922 14 H 0.052 0.948 15 O -0.389 6.389 16 C 0.037 3.963 17 C 0.141 3.859 18 N -0.588 5.588 19 C -0.265 4.265 20 H 0.068 0.932 21 C 0.018 3.982 22 N -0.900 5.900 23 Si 0.902 3.098 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.282 1.282 27 C 0.138 3.862 28 H 0.037 0.963 29 C 0.124 3.876 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.179 0.821 34 H 0.157 0.843 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.105 0.895 42 H 0.026 0.974 43 H 0.258 0.742 44 H 0.106 0.894 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.928 11.568 -1.246 16.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.029 4.029 3 N -0.086 5.086 4 N -0.071 5.071 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.132 4.132 8 C 0.346 3.654 9 O -0.388 6.388 10 N -0.333 5.333 11 C -0.014 4.014 12 C -0.164 4.164 13 C 0.018 3.982 14 H 0.070 0.930 15 O -0.308 6.308 16 C -0.041 4.041 17 C 0.016 3.984 18 N -0.313 5.313 19 C -0.394 4.394 20 H 0.086 0.914 21 C -0.182 4.182 22 N -0.543 5.543 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.214 1.214 26 H -0.208 1.208 27 C 0.030 3.970 28 H 0.055 0.945 29 C 0.003 3.997 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.196 0.804 34 H 0.175 0.825 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.123 0.877 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.124 0.876 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.209 13.065 -0.931 17.240 hybrid contribution 0.129 -2.425 0.893 2.588 sum 11.338 10.640 -0.039 15.549 Atomic orbital electron populations 1.20792 0.86559 1.04361 1.04573 1.23051 0.99452 0.88609 0.91779 1.73048 1.01541 1.23898 1.10067 1.72876 0.99585 1.27783 1.06852 1.24276 1.02712 0.89178 0.97228 1.22664 0.93739 1.00595 0.94501 1.21177 0.94937 0.95792 1.01315 1.17934 0.82471 0.82707 0.82289 1.90857 1.31570 1.78530 1.37848 1.48241 1.45794 1.13957 1.25270 1.21568 0.92634 1.01140 0.86076 1.21586 1.01471 0.96896 0.96496 1.22377 0.95542 0.93985 0.86316 0.92993 1.87743 1.80708 1.28437 1.33934 1.23406 0.98691 0.81366 1.00624 1.21586 0.92093 1.02218 0.82551 1.43919 1.74146 1.07145 1.06077 1.18991 1.04343 1.17044 0.99032 0.91442 1.25320 0.95217 1.00248 0.97437 1.69879 1.14481 1.37556 1.32361 0.86385 0.77255 0.79556 0.83693 1.20518 1.21420 1.20794 1.21282 0.94218 0.89633 0.91883 0.94493 1.21852 0.98440 0.79370 1.00025 0.88852 0.89612 0.89786 0.80444 0.82540 0.90005 0.90763 0.89949 0.90899 0.90096 0.94192 0.87709 0.95591 0.93193 0.87563 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 9.53 36.01 0.34 -0.87 16 2 C 0.12 1.46 6.90 -82.00 -0.57 0.89 16 3 N -0.24 -3.20 11.42 33.81 0.39 -2.82 16 4 N -0.23 -2.75 11.48 30.53 0.35 -2.40 16 5 C 0.03 0.26 11.30 -17.42 -0.20 0.06 16 6 C -0.09 -0.76 8.04 -38.78 -0.31 -1.07 16 7 C -0.12 -1.42 4.60 -104.58 -0.48 -1.90 16 8 C 0.56 8.30 6.21 -12.20 -0.08 8.22 16 9 O -0.51 -9.48 15.43 5.35 0.08 -9.40 16 10 N -0.60 -8.52 2.98 -174.54 -0.52 -9.04 16 11 C 0.11 1.18 5.56 -4.38 -0.02 1.15 16 12 C -0.13 -1.62 5.72 -27.36 -0.16 -1.77 16 13 C 0.08 1.32 2.50 -26.63 -0.07 1.26 16 14 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 15 O -0.39 -7.36 10.49 -35.23 -0.37 -7.73 16 16 C 0.04 0.70 6.96 37.26 0.26 0.96 16 17 C 0.14 3.25 5.38 -3.48 -0.02 3.23 16 18 N -0.59 -13.98 3.04 -164.36 -0.50 -14.48 16 19 C -0.27 -6.78 8.74 -15.06 -0.13 -6.92 16 20 H 0.07 1.67 6.49 -52.49 -0.34 1.33 16 21 C 0.02 0.47 5.34 -17.43 -0.09 0.38 16 22 N -0.90 -24.86 10.70 55.49 0.59 -24.27 16 23 Si 0.90 20.89 29.56 -169.99 -5.02 15.86 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.14 2.76 3.00 -67.53 -0.20 2.56 16 28 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 29 C 0.12 2.22 4.61 -3.71 -0.02 2.21 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.08 6.66 -51.92 -0.35 0.73 16 33 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.16 0.97 7.83 -52.48 -0.41 0.56 16 35 H 0.08 0.74 5.42 -51.93 -0.28 0.46 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 2.65 6.16 -51.93 -0.32 2.33 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.11 2.22 6.83 -51.93 -0.35 1.86 16 45 H 0.08 1.35 7.38 -51.93 -0.38 0.97 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -31.47 355.39 -7.61 -39.08 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.22 Total: 1.46 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -1.74 Total: 8.38 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.31 Total: -53.01 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.29 Total: -17.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.47 -7.61 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074286767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.224 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds