Wall clock time and date at job start Tue Mar 31 2020 17:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31920 * 120.16925 * 2 1 4 4 N 1.28279 * 122.32888 * 179.97438 * 3 2 1 5 5 C 1.31922 * 122.51117 * 359.97438 * 4 3 2 6 6 C 1.38500 * 119.96950 * 359.72333 * 5 4 3 7 7 C 1.39725 * 120.17390 * 179.97438 * 2 1 3 8 8 C 1.48132 * 121.14510 * 0.02562 * 7 2 1 9 9 O 1.21515 * 120.00371 * 306.64063 * 8 7 2 10 10 N 1.34779 * 119.99980 * 126.64670 * 8 7 2 11 11 C 1.46847 * 120.40908 * 354.07535 * 10 8 7 12 12 C 1.51966 * 109.38106 * 231.93570 * 11 10 8 13 13 C 1.52791 * 109.55257 * 306.69783 * 12 11 10 14 14 H 1.08997 * 108.96342 * 302.42810 * 13 12 11 15 15 O 1.42603 * 111.10497 * 181.89536 * 13 12 11 16 16 C 1.43153 * 113.62916 * 176.38805 * 15 13 12 17 17 C 1.53190 * 109.74025 * 61.68957 * 16 15 13 18 18 N 1.47350 * 108.80148 * 308.78465 * 17 16 15 19 19 C 1.36936 * 121.30932 * 230.21969 * 18 17 16 20 20 H 1.08002 * 120.00107 * 145.06517 * 19 18 17 21 21 C 1.38808 * 119.99939 * 325.07173 * 19 18 17 22 22 N 1.31612 * 119.99908 * 4.31832 * 21 19 18 23 23 Si 1.86806 * 119.99918 * 184.32480 * 21 19 18 24 24 H 1.48493 * 109.47058 * 59.99507 * 23 21 19 25 25 H 1.48498 * 109.47131 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46710 * 299.99573 * 23 21 19 27 27 C 1.46881 * 117.38697 * 50.24578 * 18 17 16 28 28 H 1.08995 * 109.65551 * 67.64803 * 27 18 17 29 29 C 1.47127 * 120.41350 * 174.11052 * 10 8 7 30 30 H 1.08998 * 109.47080 * 274.87346 * 1 2 3 31 31 H 1.09000 * 109.47248 * 34.87901 * 1 2 3 32 32 H 1.09011 * 109.46792 * 154.87748 * 1 2 3 33 33 H 1.08002 * 120.01073 * 180.02562 * 5 4 3 34 34 H 1.08007 * 121.09028 * 180.30722 * 6 5 4 35 35 H 1.09002 * 109.50673 * 352.21401 * 11 10 8 36 36 H 1.09005 * 109.50181 * 112.30306 * 11 10 8 37 37 H 1.08995 * 109.72882 * 186.34970 * 12 11 10 38 38 H 1.08996 * 108.68965 * 66.40434 * 12 11 10 39 39 H 1.08996 * 109.42724 * 181.77674 * 16 15 13 40 40 H 1.09004 * 109.42408 * 301.60759 * 16 15 13 41 41 H 1.09005 * 109.58235 * 188.99305 * 17 16 15 42 42 H 1.08999 * 109.58373 * 68.58556 * 17 16 15 43 43 H 0.97010 * 119.99998 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.72675 * 7.07209 * 29 10 8 45 45 H 1.09004 * 109.72226 * 246.41033 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1405 0.0000 4 7 3.4518 1.1888 0.0005 5 6 4.2023 0.1039 0.0015 6 6 3.6091 -1.1477 0.0079 7 6 2.2093 -1.2079 0.0005 8 6 1.4984 -2.5075 0.0006 9 8 0.6554 -2.7390 0.8446 10 7 1.7865 -3.4333 -0.9356 11 6 2.7070 -3.1170 -2.0352 12 6 2.0482 -3.4637 -3.3600 13 6 1.5624 -4.9119 -3.3259 14 1 2.4093 -5.5647 -3.1147 15 8 0.9763 -5.2864 -4.5709 16 6 0.5759 -6.6596 -4.6266 17 6 -0.4921 -6.9307 -3.5623 18 7 -0.0042 -6.4356 -2.2630 19 6 -0.0343 -7.2244 -1.1441 20 1 0.7518 -7.1470 -0.4075 21 6 -1.0751 -8.1235 -0.9566 22 7 -1.9869 -8.2792 -1.8928 23 14 -1.1816 -9.1123 0.6247 24 1 -1.2943 -8.1869 1.7805 25 1 -2.3762 -9.9932 0.5782 26 1 0.0407 -9.9425 0.7726 27 6 0.5152 -5.0625 -2.2151 28 1 -0.2987 -4.3567 -2.3802 29 6 1.1821 -4.7730 -0.8691 30 1 -0.3633 0.0873 1.0239 31 1 -0.3634 0.8430 -0.5877 32 1 -0.3633 -0.9306 -0.4364 33 1 5.2787 0.1916 0.0023 34 1 4.2060 -2.0478 0.0138 35 1 2.9502 -2.0547 -2.0121 36 1 3.6202 -3.7020 -1.9250 37 1 2.7649 -3.3378 -4.1714 38 1 1.1994 -2.7972 -3.5130 39 1 0.1681 -6.8786 -5.6134 40 1 1.4407 -7.2972 -4.4430 41 1 -0.6797 -8.0026 -3.4977 42 1 -1.4131 -6.4121 -3.8285 43 1 -2.7144 -8.9073 -1.7617 44 1 0.4358 -4.8010 -0.0751 45 1 1.9554 -5.5161 -0.6741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074286767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:55 Heat of formation + Delta-G solvation = -5.114535 kcal Electronic energy + Delta-G solvation = -29828.027771 eV Core-core repulsion = 25846.382394 eV Total energy + Delta-G solvation = -3981.645376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.53692 -41.29117 -40.03507 -37.62765 -36.54522 -35.01921 -34.54626 -33.35375 -33.01664 -31.48691 -29.56364 -28.91195 -27.45838 -25.99541 -25.46154 -24.19589 -23.65786 -22.93485 -21.53824 -20.80396 -19.06680 -18.77787 -18.50607 -17.63824 -17.12077 -16.97980 -16.83335 -16.50985 -16.23478 -16.07241 -15.89005 -15.49547 -15.26631 -14.95289 -14.67981 -14.65204 -14.43071 -14.07586 -13.98104 -13.88888 -13.43127 -13.37262 -12.98747 -12.93625 -12.68306 -12.47520 -12.35070 -12.10757 -12.07265 -11.98689 -11.82148 -11.61537 -11.33421 -11.15232 -10.84980 -10.69866 -10.64292 -10.56394 -9.86367 -8.64268 -7.93102 -5.50271 -0.66361 -0.21434 1.30085 1.43552 1.47890 1.52115 1.64195 2.39622 2.43839 2.78162 2.89262 3.06692 3.24403 3.25517 3.41874 3.51819 3.74213 3.83438 3.86497 4.01637 4.17488 4.18315 4.19655 4.34661 4.37215 4.43203 4.47830 4.53133 4.53691 4.55669 4.59995 4.75072 4.85142 4.86480 4.96639 4.98136 5.06673 5.13175 5.14647 5.23249 5.36355 5.59222 5.62507 6.13397 6.27469 6.37655 6.81732 7.06327 7.56211 7.69809 8.28686 9.11353 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015047 B = 0.003821 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.382783 B = 7326.047858 C = 8383.655313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.105 3.895 3 N -0.266 5.266 4 N -0.255 5.255 5 C 0.046 3.954 6 C -0.062 4.062 7 C -0.134 4.134 8 C 0.564 3.436 9 O -0.561 6.561 10 N -0.596 5.596 11 C 0.108 3.892 12 C -0.119 4.119 13 C 0.081 3.919 14 H 0.063 0.937 15 O -0.394 6.394 16 C 0.050 3.950 17 C 0.145 3.855 18 N -0.606 5.606 19 C -0.265 4.265 20 H 0.076 0.924 21 C -0.037 4.037 22 N -0.932 5.932 23 Si 0.962 3.038 24 H -0.283 1.283 25 H -0.294 1.294 26 H -0.268 1.268 27 C 0.135 3.865 28 H 0.002 0.998 29 C 0.140 3.860 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.226 0.774 34 H 0.195 0.805 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.051 0.949 41 H 0.079 0.921 42 H -0.008 1.008 43 H 0.252 0.748 44 H 0.067 0.933 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.224 12.533 -1.592 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.040 4.040 3 N -0.108 5.108 4 N -0.095 5.095 5 C -0.118 4.118 6 C -0.092 4.092 7 C -0.148 4.148 8 C 0.351 3.649 9 O -0.440 6.440 10 N -0.328 5.328 11 C -0.013 4.013 12 C -0.157 4.157 13 C 0.021 3.979 14 H 0.081 0.919 15 O -0.313 6.313 16 C -0.027 4.027 17 C 0.019 3.981 18 N -0.331 5.331 19 C -0.395 4.395 20 H 0.094 0.906 21 C -0.234 4.234 22 N -0.577 5.577 23 Si 0.790 3.210 24 H -0.209 1.209 25 H -0.220 1.220 26 H -0.193 1.193 27 C 0.027 3.973 28 H 0.020 0.980 29 C 0.017 3.983 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.243 0.757 34 H 0.212 0.788 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.010 0.990 43 H 0.061 0.939 44 H 0.085 0.915 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.549 14.076 -1.302 21.014 hybrid contribution -1.163 -2.665 0.995 3.073 sum 14.387 11.411 -0.307 18.365 Atomic orbital electron populations 1.20724 0.87009 1.03792 1.04497 1.23051 0.99512 0.89009 0.92467 1.73030 1.02500 1.24032 1.11262 1.72792 0.99279 1.29711 1.07699 1.24991 1.04468 0.87830 0.94503 1.23108 0.92126 1.02322 0.91606 1.20928 0.96429 0.93632 1.03816 1.18333 0.81757 0.83410 0.81421 1.90832 1.33761 1.79532 1.39833 1.48229 1.45949 1.12374 1.26244 1.21909 0.92558 1.03480 0.83390 1.21620 1.01914 0.93229 0.98964 1.22480 0.94203 0.97093 0.84085 0.91918 1.87750 1.80729 1.28111 1.34750 1.23215 0.97523 0.81888 1.00100 1.21396 0.92517 1.00129 0.84014 1.44186 1.74283 1.08686 1.05968 1.19342 1.04221 1.16481 0.99435 0.90606 1.26032 0.95351 1.01997 0.99995 1.70060 1.15156 1.38576 1.33873 0.85435 0.77318 0.78138 0.80151 1.20906 1.22018 1.19339 1.21420 0.94294 0.86771 0.94793 0.98000 1.21383 0.97719 0.81831 0.97355 0.89136 0.88298 0.91760 0.75745 0.78827 0.87333 0.87104 0.86563 0.92305 0.87680 0.93111 0.90269 0.98997 0.93883 0.91458 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.46 9.53 71.24 0.68 -1.78 16 2 C 0.10 2.56 6.90 42.90 0.30 2.86 16 3 N -0.27 -6.66 11.42 -46.95 -0.54 -7.20 16 4 N -0.25 -5.35 11.48 -57.33 -0.66 -6.01 16 5 C 0.05 0.56 11.30 84.74 0.96 1.52 16 6 C -0.06 -0.81 8.04 22.79 0.18 -0.62 16 7 C -0.13 -2.95 4.60 -19.83 -0.09 -3.04 16 8 C 0.56 16.33 6.21 86.87 0.54 16.87 16 9 O -0.56 -21.55 15.43 -3.76 -0.06 -21.61 16 10 N -0.60 -16.01 2.98 -824.41 -2.46 -18.47 16 11 C 0.11 1.86 5.56 85.97 0.48 2.34 16 12 C -0.12 -2.65 5.72 30.18 0.17 -2.47 16 13 C 0.08 2.59 2.50 30.66 0.08 2.67 16 14 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 15 O -0.39 -14.29 10.49 -148.98 -1.56 -15.85 16 16 C 0.05 1.88 6.96 72.05 0.50 2.38 16 17 C 0.14 6.94 5.38 86.28 0.46 7.41 16 18 N -0.61 -29.66 3.04 -673.91 -2.05 -31.72 16 19 C -0.27 -13.89 8.74 84.03 0.73 -13.16 16 20 H 0.08 3.77 6.49 -2.91 -0.02 3.75 16 21 C -0.04 -2.04 5.34 84.86 0.45 -1.58 16 22 N -0.93 -53.82 10.70 21.65 0.23 -53.58 16 23 Si 0.96 43.98 29.56 68.60 2.03 46.00 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 C 0.13 5.48 3.00 45.05 0.14 5.61 16 28 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 29 C 0.14 5.02 4.61 86.25 0.40 5.42 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 1.77 6.66 -2.38 -0.02 1.76 16 33 H 0.23 0.51 8.06 -2.91 -0.02 0.48 16 34 H 0.19 1.08 7.83 -2.91 -0.02 1.06 16 35 H 0.11 1.39 5.42 -2.39 -0.01 1.38 16 36 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 40 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 4.19 6.16 -2.38 -0.01 4.18 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 44 H 0.07 2.95 6.83 -2.38 -0.02 2.93 16 45 H 0.09 2.91 7.38 -2.39 -0.02 2.89 16 Total: -1.00 -74.67 355.39 1.92 -72.75 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.01 Total: 11.27 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: 5.98 Total: 24.41 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -5.47 Total: -116.98 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -1.62 Total: -37.46 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -74.67 1.92 -72.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074286767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.635 kcal (2) G-P(sol) polarization free energy of solvation -74.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds