Wall clock time and date at job start Tue Mar 31 2020 16:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00160 * 2 1 4 4 H 1.48492 * 109.47352 * 270.00970 * 3 2 1 5 5 H 1.48506 * 109.46668 * 30.00530 * 3 2 1 6 6 H 1.48496 * 109.47310 * 150.00245 * 3 2 1 7 7 C 1.38809 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00442 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00358 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.88573 * 23.65931 * 10 9 7 12 12 C 1.53946 * 113.66666 * 252.18812 * 10 9 7 13 13 C 1.53958 * 87.29612 * 220.79618 * 12 10 9 14 14 H 1.08994 * 113.65977 * 270.26062 * 13 12 10 15 15 N 1.46498 * 113.66040 * 139.20611 * 13 12 10 16 16 C 1.34771 * 120.00252 * 107.81515 * 15 13 12 17 17 O 1.21569 * 119.99917 * 359.97438 * 16 15 13 18 18 C 1.47720 * 120.00262 * 179.97438 * 16 15 13 19 19 C 1.40943 * 125.97388 * 179.71435 * 18 16 15 20 20 C 1.36176 * 107.94618 * 179.74771 * 19 18 16 21 21 N 1.35803 * 107.31639 * 0.76699 * 20 19 18 22 22 N 1.31837 * 125.97329 * 0.02562 * 18 16 15 23 23 C 1.47429 * 108.07280 * 178.98586 * 21 20 19 24 24 C 1.54649 * 102.35206 * 344.74345 * 23 21 20 25 25 O 1.36124 * 140.87752 * 180.75382 * 20 19 18 26 26 C 1.52907 * 86.78205 * 24.73272 * 13 12 10 27 27 C 1.52909 * 121.13536 * 209.38733 * 26 13 12 28 28 C 1.53952 * 86.78252 * 209.38099 * 27 26 13 29 29 C 1.53064 * 121.17777 * 100.75092 * 26 13 12 30 30 H 0.97003 * 120.00028 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99745 * 359.97438 * 9 7 2 32 32 H 1.09000 * 113.57626 * 335.39826 * 12 10 9 33 33 H 1.08997 * 113.57982 * 106.19073 * 12 10 9 34 34 H 0.97006 * 119.99739 * 287.80421 * 15 13 12 35 35 H 1.08001 * 126.02804 * 359.88592 * 19 18 16 36 36 H 1.08994 * 110.82951 * 102.95696 * 23 21 20 37 37 H 1.08995 * 110.82740 * 226.52600 * 23 21 20 38 38 H 1.08989 * 110.84940 * 266.64593 * 24 23 21 39 39 H 1.08999 * 110.84907 * 143.01550 * 24 23 21 40 40 H 1.09000 * 113.66588 * 94.90895 * 27 26 13 41 41 H 1.09002 * 113.66049 * 323.84790 * 27 26 13 42 42 H 1.09002 * 113.58142 * 139.33437 * 28 27 26 43 43 H 1.09004 * 113.57653 * 270.05037 * 28 27 26 44 44 H 1.09006 * 113.66264 * 36.13819 * 29 26 13 45 45 H 1.09001 * 113.71778 * 265.03884 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 3.0669 -3.5642 0.4006 12 6 1.9925 -4.4070 -1.3444 13 6 1.8246 -5.7022 -0.5292 14 1 2.7684 -6.1854 -0.2765 15 7 0.8415 -6.6296 -1.0947 16 6 1.2523 -7.7672 -1.6891 17 8 2.4387 -8.0236 -1.7566 18 6 0.2610 -8.7025 -2.2588 19 6 0.5491 -9.9188 -2.9101 20 6 -0.6319 -10.4857 -3.2818 21 7 -1.6243 -9.6446 -2.8923 22 7 -1.0476 -8.5427 -2.2520 23 6 -2.9110 -10.2314 -3.3090 24 6 -2.4689 -11.3109 -4.3243 25 8 -1.1225 -11.5941 -3.9014 26 6 1.2661 -4.8232 0.5904 27 6 1.4214 -5.2197 2.0590 28 6 0.1051 -4.4625 2.3126 29 6 -0.2411 -4.7120 0.8334 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 1.1183 -4.1526 -1.9436 33 1 2.9219 -4.3666 -1.9123 34 1 -0.1052 -6.4248 -1.0410 35 1 1.5330 -10.3298 -3.0819 36 1 -3.4234 -10.6843 -2.4603 37 1 -3.5411 -9.4827 -3.7890 38 1 -2.4817 -10.9164 -5.3402 39 1 -3.0958 -12.1990 -4.2439 40 1 2.2863 -4.7683 2.5449 41 1 1.3487 -6.2934 2.2322 42 1 -0.5629 -4.9702 3.0084 43 1 0.2477 -3.4095 2.5554 44 1 -0.7818 -5.6428 0.6616 45 1 -0.7024 -3.8556 0.3416 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078647967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:24 Heat of formation + Delta-G solvation = 96.981506 kcal Electronic energy + Delta-G solvation = -28266.928099 eV Core-core repulsion = 24289.709939 eV Total energy + Delta-G solvation = -3977.218160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.62347 -40.56706 -39.37992 -38.21894 -34.83156 -34.11550 -33.66903 -32.46452 -30.41392 -29.67940 -29.16432 -25.50787 -25.43295 -24.18802 -24.08713 -23.13101 -21.86840 -21.50135 -20.41964 -19.99773 -18.27851 -17.83823 -17.44326 -16.85500 -16.67312 -16.25055 -15.82576 -15.43609 -15.17336 -14.89474 -14.69643 -14.47411 -14.37349 -13.90805 -13.77228 -13.18571 -12.99583 -12.78569 -12.72142 -12.47223 -12.03864 -11.84443 -11.71322 -11.46622 -11.23924 -11.18486 -10.89033 -10.79164 -10.68482 -10.21033 -10.14015 -10.01885 -9.85246 -9.66121 -9.54287 -9.42164 -8.84233 -8.83694 -8.62871 -6.95773 -5.78727 -3.06867 1.07127 1.48066 1.83614 2.39763 3.23533 3.32447 3.43611 3.48067 3.49578 3.50440 4.04898 4.13381 4.42924 4.57343 4.59389 4.73016 4.84220 4.93469 4.97340 5.01530 5.11600 5.26460 5.28501 5.31112 5.47090 5.59506 5.71833 5.90897 5.96349 6.02597 6.04357 6.08726 6.12231 6.24453 6.37587 6.43098 6.48642 6.57065 6.61403 6.63754 6.90225 6.96418 7.07158 7.14877 7.66267 7.70905 8.22010 8.40217 9.51897 10.08839 10.43829 11.43616 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.002440 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.845439 B =11471.552755 C =11647.032955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.193 3.807 11 H 0.083 0.917 12 C -0.174 4.174 13 C 0.129 3.871 14 H 0.114 0.886 15 N -0.693 5.693 16 C 0.600 3.400 17 O -0.526 6.526 18 C 0.058 3.942 19 C -0.213 4.213 20 C 0.231 3.769 21 N -0.413 5.413 22 N -0.217 5.217 23 C 0.097 3.903 24 C 0.041 3.959 25 O -0.279 6.279 26 C -0.119 4.119 27 C -0.125 4.125 28 C -0.130 4.130 29 C -0.117 4.117 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.406 0.594 35 H 0.166 0.834 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.432 -23.761 -5.388 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.080 3.920 11 H 0.101 0.899 12 C -0.216 4.216 13 C 0.024 3.976 14 H 0.132 0.868 15 N -0.343 5.343 16 C 0.382 3.618 17 O -0.400 6.400 18 C -0.109 4.109 19 C -0.242 4.242 20 C 0.064 3.936 21 N -0.210 5.210 22 N -0.047 5.047 23 C -0.023 4.023 24 C -0.035 4.035 25 O -0.186 6.186 26 C -0.122 4.122 27 C -0.163 4.163 28 C -0.167 4.167 29 C -0.155 4.155 30 H 0.065 0.935 31 H 0.222 0.778 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.243 0.757 35 H 0.183 0.817 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.149 0.851 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.463 -23.169 -5.087 24.867 hybrid contribution -0.110 0.402 -0.442 0.607 sum -7.573 -22.767 -5.529 24.622 Atomic orbital electron populations 1.69653 1.05101 1.25705 1.57594 1.24737 0.95502 0.97703 1.02865 0.86199 0.78693 0.83846 0.77510 1.21752 1.21849 1.20720 1.19305 0.91126 0.84102 1.42729 0.91030 1.42354 1.05849 0.99473 1.86746 1.21057 0.94772 0.84345 0.91839 0.89923 1.24292 1.01968 0.95040 1.00301 1.22418 0.92423 0.87633 0.95108 0.86813 1.45880 1.11403 1.20112 1.56859 1.16794 0.86325 0.80438 0.78201 1.90807 1.15731 1.75307 1.58185 1.22086 0.91247 0.96328 1.01220 1.20074 0.96133 0.96181 1.11849 1.20765 0.91452 0.84725 0.96694 1.50673 1.06875 1.17097 1.46392 1.77701 1.07249 1.03022 1.16711 1.23266 0.83701 0.96055 0.99315 1.24469 0.81023 0.99419 0.98564 1.87146 1.29195 1.29686 1.72576 1.23655 0.97412 0.97939 0.93182 1.22701 0.98544 0.99262 0.95795 1.22724 0.96665 1.01518 0.95795 1.22465 0.94399 1.01259 0.97386 0.93502 0.77752 0.90091 0.91884 0.75740 0.81654 0.87603 0.86803 0.88687 0.85140 0.91407 0.90979 0.92586 0.89131 0.91070 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -16.95 5.32 -52.99 -0.28 -17.23 16 10 C 0.19 3.74 4.36 -67.48 -0.29 3.45 16 11 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 12 C -0.17 -3.11 7.68 -25.75 -0.20 -3.30 16 13 C 0.13 2.03 4.12 -67.48 -0.28 1.75 16 14 H 0.11 1.83 7.46 -51.93 -0.39 1.44 16 15 N -0.69 -10.17 5.25 -54.35 -0.29 -10.46 16 16 C 0.60 9.33 7.83 -12.39 -0.10 9.24 16 17 O -0.53 -9.47 16.50 5.30 0.09 -9.38 16 18 C 0.06 0.82 7.09 -82.97 -0.59 0.23 16 19 C -0.21 -2.71 10.60 -39.30 -0.42 -3.13 16 20 C 0.23 2.56 8.32 -16.54 -0.14 2.42 16 21 N -0.41 -4.38 5.01 -59.63 -0.30 -4.67 16 22 N -0.22 -2.88 12.39 33.31 0.41 -2.46 16 23 C 0.10 0.48 8.10 -2.67 -0.02 0.46 16 24 C 0.04 0.15 8.08 38.02 0.31 0.45 16 25 O -0.28 -2.39 11.19 -20.14 -0.23 -2.62 16 26 C -0.12 -1.93 1.07 -154.63 -0.16 -2.09 16 27 C -0.13 -1.87 7.84 -26.28 -0.21 -2.07 16 28 C -0.13 -2.02 8.08 -25.75 -0.21 -2.23 16 29 C -0.12 -1.85 6.79 -26.20 -0.18 -2.02 16 30 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 31 H 0.39 9.79 5.91 -40.82 -0.24 9.55 16 32 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.41 5.61 6.73 -40.82 -0.27 5.34 16 35 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.22 8.14 -51.94 -0.42 -0.21 16 39 H 0.13 0.02 8.14 -51.93 -0.42 -0.40 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 44 H 0.07 0.98 7.03 -51.93 -0.37 0.61 16 45 H 0.08 1.43 6.41 -51.93 -0.33 1.10 16 LS Contribution 372.28 15.07 5.61 5.61 Total: -1.00 -33.47 372.28 -8.23 -41.69 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.22 Total: 13.15 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.73 Total: -3.97 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: 0.27 Total: -61.64 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.14 Total: -12.00 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.47 -8.23 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078647967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.676 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds