Wall clock time and date at job start Tue Mar 31 2020 16:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00160 * 2 1 4 4 H 1.48492 * 109.47352 * 270.00970 * 3 2 1 5 5 H 1.48506 * 109.46668 * 30.00530 * 3 2 1 6 6 H 1.48496 * 109.47310 * 150.00245 * 3 2 1 7 7 C 1.38809 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00442 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00358 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.88573 * 23.65931 * 10 9 7 12 12 C 1.53946 * 113.66666 * 252.18812 * 10 9 7 13 13 C 1.53958 * 87.29612 * 220.79618 * 12 10 9 14 14 H 1.08994 * 113.65977 * 270.26062 * 13 12 10 15 15 N 1.46498 * 113.66040 * 139.20611 * 13 12 10 16 16 C 1.34771 * 120.00252 * 107.81515 * 15 13 12 17 17 O 1.21569 * 119.99917 * 359.97438 * 16 15 13 18 18 C 1.47720 * 120.00262 * 179.97438 * 16 15 13 19 19 C 1.40943 * 125.97388 * 179.71435 * 18 16 15 20 20 C 1.36176 * 107.94618 * 179.74771 * 19 18 16 21 21 N 1.35803 * 107.31639 * 0.76699 * 20 19 18 22 22 N 1.31837 * 125.97329 * 0.02562 * 18 16 15 23 23 C 1.47429 * 108.07280 * 178.98586 * 21 20 19 24 24 C 1.54649 * 102.35206 * 344.74345 * 23 21 20 25 25 O 1.36124 * 140.87752 * 180.75382 * 20 19 18 26 26 C 1.52907 * 86.78205 * 24.73272 * 13 12 10 27 27 C 1.52909 * 121.13536 * 209.38733 * 26 13 12 28 28 C 1.53952 * 86.78252 * 209.38099 * 27 26 13 29 29 C 1.53064 * 121.17777 * 100.75092 * 26 13 12 30 30 H 0.97003 * 120.00028 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99745 * 359.97438 * 9 7 2 32 32 H 1.09000 * 113.57626 * 335.39826 * 12 10 9 33 33 H 1.08997 * 113.57982 * 106.19073 * 12 10 9 34 34 H 0.97006 * 119.99739 * 287.80421 * 15 13 12 35 35 H 1.08001 * 126.02804 * 359.88592 * 19 18 16 36 36 H 1.08994 * 110.82951 * 102.95696 * 23 21 20 37 37 H 1.08995 * 110.82740 * 226.52600 * 23 21 20 38 38 H 1.08989 * 110.84940 * 266.64593 * 24 23 21 39 39 H 1.08999 * 110.84907 * 143.01550 * 24 23 21 40 40 H 1.09000 * 113.66588 * 94.90895 * 27 26 13 41 41 H 1.09002 * 113.66049 * 323.84790 * 27 26 13 42 42 H 1.09002 * 113.58142 * 139.33437 * 28 27 26 43 43 H 1.09004 * 113.57653 * 270.05037 * 28 27 26 44 44 H 1.09006 * 113.66264 * 36.13819 * 29 26 13 45 45 H 1.09001 * 113.71778 * 265.03884 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 3.0669 -3.5642 0.4006 12 6 1.9925 -4.4070 -1.3444 13 6 1.8246 -5.7022 -0.5292 14 1 2.7684 -6.1854 -0.2765 15 7 0.8415 -6.6296 -1.0947 16 6 1.2523 -7.7672 -1.6891 17 8 2.4387 -8.0236 -1.7566 18 6 0.2610 -8.7025 -2.2588 19 6 0.5491 -9.9188 -2.9101 20 6 -0.6319 -10.4857 -3.2818 21 7 -1.6243 -9.6446 -2.8923 22 7 -1.0476 -8.5427 -2.2520 23 6 -2.9110 -10.2314 -3.3090 24 6 -2.4689 -11.3109 -4.3243 25 8 -1.1225 -11.5941 -3.9014 26 6 1.2661 -4.8232 0.5904 27 6 1.4214 -5.2197 2.0590 28 6 0.1051 -4.4625 2.3126 29 6 -0.2411 -4.7120 0.8334 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 1.1183 -4.1526 -1.9436 33 1 2.9219 -4.3666 -1.9123 34 1 -0.1052 -6.4248 -1.0410 35 1 1.5330 -10.3298 -3.0819 36 1 -3.4234 -10.6843 -2.4603 37 1 -3.5411 -9.4827 -3.7890 38 1 -2.4817 -10.9164 -5.3402 39 1 -3.0958 -12.1990 -4.2439 40 1 2.2863 -4.7683 2.5449 41 1 1.3487 -6.2934 2.2322 42 1 -0.5629 -4.9702 3.0084 43 1 0.2477 -3.4095 2.5554 44 1 -0.7818 -5.6428 0.6616 45 1 -0.7024 -3.8556 0.3416 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078647967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:23 Heat of formation + Delta-G solvation = 72.194674 kcal Electronic energy + Delta-G solvation = -28268.002937 eV Core-core repulsion = 24289.709939 eV Total energy + Delta-G solvation = -3978.292997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.38125 -41.90896 -40.41567 -39.20396 -36.26903 -35.77783 -34.39640 -33.98512 -31.88345 -30.89437 -29.92928 -26.86262 -26.70425 -25.68674 -25.32732 -24.03402 -23.08105 -22.46042 -21.78862 -21.14447 -19.63004 -19.10488 -18.48102 -18.10019 -17.61955 -17.33822 -16.69107 -16.57912 -16.39908 -16.13061 -16.06607 -15.90497 -15.37423 -15.08389 -14.80414 -14.38457 -14.34245 -13.96807 -13.82824 -13.49908 -13.18308 -13.14213 -13.10293 -12.86986 -12.72627 -12.34242 -12.26988 -12.23893 -12.13331 -12.03441 -11.84880 -11.48047 -11.34654 -11.02928 -10.98953 -10.71578 -10.33488 -9.92129 -9.69600 -8.93940 -7.92206 -5.19141 0.10635 0.77932 0.93305 1.48699 1.49502 1.57712 1.67506 2.18426 2.23168 2.58521 3.01291 3.36172 3.39044 3.49577 3.62151 3.75282 3.80674 3.84117 3.94070 4.02165 4.09225 4.13419 4.24171 4.29551 4.44068 4.46419 4.56282 4.62881 4.65885 4.74207 4.76073 4.78454 4.86886 5.02585 5.11058 5.13809 5.17253 5.21353 5.28426 5.50621 5.53250 5.63274 5.67761 5.76934 6.21837 6.30205 6.50194 7.01724 7.37506 8.13478 8.38023 9.30906 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.002440 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.845439 B =11471.552755 C =11647.032955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.968 3.032 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.239 4.239 8 H 0.075 0.925 9 N -0.716 5.716 10 C 0.177 3.823 11 H 0.082 0.918 12 C -0.169 4.169 13 C 0.146 3.854 14 H 0.117 0.883 15 N -0.686 5.686 16 C 0.603 3.397 17 O -0.556 6.556 18 C 0.041 3.959 19 C -0.237 4.237 20 C 0.240 3.760 21 N -0.409 5.409 22 N -0.233 5.233 23 C 0.085 3.915 24 C 0.041 3.959 25 O -0.289 6.289 26 C -0.111 4.111 27 C -0.114 4.114 28 C -0.128 4.128 29 C -0.113 4.113 30 H 0.250 0.750 31 H 0.378 0.622 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.412 0.588 35 H 0.165 0.835 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.171 0.829 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.463 -26.116 -5.651 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.798 3.202 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.354 5.354 10 C 0.066 3.934 11 H 0.100 0.900 12 C -0.211 4.211 13 C 0.041 3.959 14 H 0.135 0.865 15 N -0.335 5.335 16 C 0.387 3.613 17 O -0.432 6.432 18 C -0.124 4.124 19 C -0.267 4.267 20 C 0.070 3.930 21 N -0.208 5.208 22 N -0.064 5.064 23 C -0.033 4.033 24 C -0.034 4.034 25 O -0.196 6.196 26 C -0.114 4.114 27 C -0.152 4.152 28 C -0.166 4.166 29 C -0.150 4.150 30 H 0.059 0.941 31 H 0.212 0.788 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.249 0.751 35 H 0.183 0.817 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.128 0.872 39 H 0.188 0.812 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.116 0.884 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.494 -25.574 -5.361 27.476 hybrid contribution 0.106 0.973 -0.454 1.079 sum -8.387 -24.602 -5.815 26.635 Atomic orbital electron populations 1.69801 1.06442 1.25885 1.59691 1.25473 0.96311 1.00788 1.03979 0.85214 0.77810 0.79970 0.77222 1.21797 1.22374 1.19498 1.19676 0.91506 0.85305 1.40642 0.90660 1.42458 1.05567 1.00322 1.87071 1.21310 0.94983 0.83662 0.93440 0.90012 1.24133 1.01374 0.96230 0.99408 1.22135 0.92791 0.86993 0.93960 0.86534 1.45746 1.11393 1.19748 1.56644 1.16982 0.86287 0.80479 0.77568 1.90781 1.17058 1.76022 1.59326 1.21763 0.91413 0.96679 1.02590 1.20145 0.97109 0.96496 1.12952 1.20734 0.91140 0.85142 0.95941 1.51092 1.08768 1.15998 1.44897 1.77572 1.06876 1.04473 1.17511 1.23849 0.82000 0.96767 1.00684 1.24949 0.78896 1.00824 0.98739 1.87161 1.31608 1.28623 1.72174 1.23431 0.97532 0.95976 0.94437 1.22693 0.97975 1.00506 0.93986 1.22632 0.97809 0.99978 0.96144 1.22475 0.93933 1.01373 0.97251 0.94134 0.78771 0.91424 0.91923 0.75084 0.81742 0.85512 0.84791 0.87220 0.81151 0.91567 0.88578 0.90129 0.92387 0.88436 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.67 13.06 21.65 0.28 -58.39 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 3 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 4 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.24 -13.14 9.97 84.03 0.84 -12.31 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -35.27 5.32 -321.57 -1.71 -36.98 16 10 C 0.18 6.94 4.36 45.28 0.20 7.14 16 11 H 0.08 3.20 8.10 -2.39 -0.02 3.18 16 12 C -0.17 -6.12 7.68 31.23 0.24 -5.88 16 13 C 0.15 4.52 4.12 45.28 0.19 4.71 16 14 H 0.12 3.64 7.46 -2.39 -0.02 3.62 16 15 N -0.69 -19.70 5.25 -444.15 -2.33 -22.03 16 16 C 0.60 18.64 7.83 86.75 0.68 19.32 16 17 O -0.56 -20.08 16.50 -3.93 -0.06 -20.14 16 18 C 0.04 1.14 7.09 42.31 0.30 1.44 16 19 C -0.24 -5.99 10.60 22.45 0.24 -5.75 16 20 C 0.24 4.95 8.32 83.60 0.70 5.65 16 21 N -0.41 -7.83 5.01 -453.34 -2.27 -10.10 16 22 N -0.23 -5.92 12.39 -48.51 -0.60 -6.53 16 23 C 0.09 0.54 8.10 86.76 0.70 1.24 16 24 C 0.04 0.13 8.08 72.54 0.59 0.72 16 25 O -0.29 -4.21 11.19 -94.97 -1.06 -5.28 16 26 C -0.11 -3.54 1.07 -52.26 -0.06 -3.59 16 27 C -0.11 -3.20 7.84 30.89 0.24 -2.96 16 28 C -0.13 -3.88 8.08 31.23 0.25 -3.63 16 29 C -0.11 -3.48 6.79 30.94 0.21 -3.27 16 30 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.38 19.85 5.91 -92.71 -0.55 19.30 16 32 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.41 11.01 6.73 -92.70 -0.62 10.38 16 35 H 0.16 3.97 8.06 -2.91 -0.02 3.94 16 36 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.17 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.10 2.30 8.14 -2.39 -0.02 2.29 16 42 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.10 2.50 7.03 -2.38 -0.02 2.48 16 45 H 0.05 1.91 6.41 -2.39 -0.02 1.90 16 Total: -1.00 -74.38 372.28 -0.09 -74.46 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.13 Total: 37.55 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 5.78 Total: -0.89 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -6.63 Total: -134.03 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.13 Total: -25.42 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -74.38 -0.09 -74.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078647967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.657 kcal (2) G-P(sol) polarization free energy of solvation -74.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds