Wall clock time and date at job start Tue Mar 31 2020 16:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48503 * 109.46903 * 270.00075 * 3 2 1 5 5 H 1.48500 * 109.47131 * 29.99780 * 3 2 1 6 6 H 1.48493 * 109.47224 * 150.00103 * 3 2 1 7 7 C 1.38811 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99847 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99916 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99665 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.88743 * 333.16977 * 10 9 7 12 12 C 1.53961 * 113.65731 * 104.51170 * 10 9 7 13 13 C 1.53945 * 87.29318 * 89.82975 * 12 10 9 14 14 H 1.08997 * 113.66378 * 270.16598 * 13 12 10 15 15 N 1.46497 * 113.66248 * 139.20637 * 13 12 10 16 16 C 1.34778 * 120.00363 * 104.50319 * 15 13 12 17 17 O 1.21573 * 119.99773 * 0.02562 * 16 15 13 18 18 C 1.47721 * 120.00462 * 180.02562 * 16 15 13 19 19 C 1.40945 * 125.97429 * 180.02562 * 18 16 15 20 20 C 1.36166 * 107.94838 * 180.32261 * 19 18 16 21 21 N 1.35810 * 107.31421 * 359.22816 * 20 19 18 22 22 N 1.31840 * 125.97054 * 359.97208 * 18 16 15 23 23 C 1.47425 * 108.07369 * 180.96335 * 21 20 19 24 24 C 1.54644 * 102.36095 * 15.43881 * 23 21 20 25 25 O 1.36121 * 140.88155 * 179.64224 * 20 19 18 26 26 C 1.52905 * 113.74848 * 201.73463 * 10 9 7 27 27 C 1.52909 * 121.13303 * 36.14590 * 26 10 9 28 28 C 1.53952 * 86.78422 * 100.81136 * 27 26 10 29 29 C 1.52907 * 121.13544 * 144.69807 * 26 10 9 30 30 H 0.97003 * 119.99931 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00383 * 0.02562 * 9 7 2 32 32 H 1.09003 * 113.57871 * 335.22533 * 12 10 9 33 33 H 1.08997 * 113.64914 * 204.44512 * 12 10 9 34 34 H 0.97005 * 119.99993 * 284.50485 * 15 13 12 35 35 H 1.08002 * 126.02297 * 0.04908 * 19 18 16 36 36 H 1.09000 * 110.83063 * 133.65876 * 23 21 20 37 37 H 1.09004 * 110.82509 * 257.01920 * 23 21 20 38 38 H 1.09001 * 110.85109 * 93.36411 * 24 23 21 39 39 H 1.09003 * 110.85471 * 217.00108 * 24 23 21 40 40 H 1.08997 * 113.66381 * 215.28116 * 27 26 10 41 41 H 1.08999 * 113.66662 * 346.34434 * 27 26 10 42 42 H 1.09003 * 113.58222 * 270.13419 * 28 27 26 43 43 H 1.08997 * 113.65472 * 139.34396 * 28 27 26 44 44 H 1.09001 * 113.66020 * 13.66430 * 29 26 10 45 45 H 1.09004 * 113.66355 * 144.71468 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0456 -3.5757 -0.4556 12 6 2.0619 -4.3691 1.3632 13 6 0.7697 -5.0762 0.9159 14 1 -0.1388 -4.5328 1.1756 15 7 0.7138 -6.4913 1.2908 16 6 -0.0662 -6.8865 2.3165 17 8 -0.7238 -6.0687 2.9302 18 6 -0.1221 -8.3133 2.6949 19 6 -0.8912 -8.8631 3.7403 20 6 -0.6621 -10.2051 3.7688 21 7 0.2068 -10.4882 2.7642 22 7 0.5379 -9.2952 2.1132 23 6 0.4488 -11.9425 2.7651 24 6 -0.7076 -12.4699 3.6460 25 8 -1.0198 -11.3231 4.4580 26 6 1.2396 -4.8399 -0.5198 27 6 0.2372 -4.6681 -1.6617 28 6 1.3140 -5.2712 -2.5820 29 6 1.8934 -5.9582 -1.3321 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 1.9199 -3.6945 2.2076 33 1 2.9046 -5.0466 1.5004 34 1 1.2382 -7.1439 0.8009 35 1 -1.5434 -8.3157 4.4047 36 1 0.3823 -12.3470 1.7551 37 1 1.4163 -12.1741 3.2106 38 1 -1.5627 -12.7559 3.0334 39 1 -0.3753 -13.3040 4.2640 40 1 -0.6514 -5.2913 -1.5613 41 1 0.0033 -3.6274 -1.8857 42 1 1.9803 -4.5275 -3.0192 43 1 0.9180 -5.9695 -3.3193 44 1 2.9827 -5.9481 -1.2927 45 1 1.4703 -6.9441 -1.1390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078647971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:31 Heat of formation + Delta-G solvation = 98.011047 kcal Electronic energy + Delta-G solvation = -28263.339482 eV Core-core repulsion = 24286.165967 eV Total energy + Delta-G solvation = -3977.173516 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.61784 -40.56344 -39.36402 -38.17693 -35.00952 -34.07063 -33.66326 -32.35836 -30.37655 -29.49225 -29.14788 -25.54165 -25.43641 -24.15037 -24.10193 -23.15232 -22.07289 -21.63326 -20.30699 -20.00746 -18.27369 -17.71475 -17.35587 -16.92919 -16.65882 -16.21024 -15.80991 -15.39095 -15.10548 -14.99437 -14.75994 -14.42800 -14.20192 -13.93129 -13.73226 -13.16936 -13.02161 -12.78140 -12.62753 -12.51855 -12.11789 -11.90624 -11.71871 -11.60035 -11.33519 -11.22569 -10.88016 -10.80153 -10.70042 -10.15001 -10.11937 -9.96020 -9.77830 -9.54094 -9.52821 -9.47465 -8.83381 -8.82938 -8.58585 -6.96194 -5.75727 -3.05290 1.08026 1.47860 1.86050 2.40321 3.26788 3.37958 3.45528 3.48138 3.50855 3.52750 4.02767 4.12936 4.43060 4.54568 4.56507 4.71420 4.80946 4.92539 4.93420 4.99641 5.07505 5.22173 5.28148 5.36873 5.48381 5.62150 5.70077 5.86015 5.95928 6.00797 6.03797 6.08125 6.12676 6.16809 6.25502 6.46251 6.49402 6.61046 6.67996 6.76127 6.82388 6.91592 7.09591 7.14947 7.70040 7.73464 8.29657 8.42462 9.53632 10.09800 10.44536 11.46320 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.002472 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.736037 B =11323.481107 C =12043.090802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.701 5.701 10 C 0.198 3.802 11 H 0.067 0.933 12 C -0.181 4.181 13 C 0.138 3.862 14 H 0.117 0.883 15 N -0.697 5.697 16 C 0.596 3.404 17 O -0.517 6.517 18 C 0.061 3.939 19 C -0.212 4.212 20 C 0.232 3.768 21 N -0.415 5.415 22 N -0.221 5.221 23 C 0.098 3.902 24 C 0.042 3.958 25 O -0.279 6.279 26 C -0.121 4.121 27 C -0.126 4.126 28 C -0.133 4.133 29 C -0.116 4.116 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.402 0.598 35 H 0.167 0.833 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 -28.755 2.649 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.084 3.916 11 H 0.085 0.915 12 C -0.224 4.224 13 C 0.034 3.966 14 H 0.134 0.866 15 N -0.348 5.348 16 C 0.378 3.622 17 O -0.390 6.390 18 C -0.106 4.106 19 C -0.242 4.242 20 C 0.064 3.936 21 N -0.212 5.212 22 N -0.051 5.051 23 C -0.023 4.023 24 C -0.034 4.034 25 O -0.186 6.186 26 C -0.124 4.124 27 C -0.163 4.163 28 C -0.170 4.170 29 C -0.154 4.154 30 H 0.066 0.934 31 H 0.222 0.778 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.238 0.762 35 H 0.184 0.816 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.148 0.852 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.226 -28.377 2.315 28.498 hybrid contribution -0.109 0.359 0.449 0.585 sum 1.117 -28.018 2.764 28.176 Atomic orbital electron populations 1.69666 1.05089 1.25793 1.57097 1.24759 0.95512 0.97727 1.02674 0.86183 0.78681 0.83812 0.77445 1.21738 1.21780 1.20734 1.19235 0.91059 0.83803 1.43277 0.91001 1.42107 1.05825 0.99079 1.86865 1.20624 0.94293 0.84592 0.92060 0.91472 1.24303 0.96049 0.99639 1.02397 1.22530 1.00078 0.78957 0.95024 0.86553 1.45962 1.45450 1.10659 1.32701 1.16829 0.80261 0.84092 0.80974 1.90857 1.43556 1.51914 1.52696 1.22140 0.97708 0.94275 0.96450 1.20113 1.10221 0.88335 1.05504 1.20752 0.93347 0.90587 0.88895 1.50666 1.36789 1.06731 1.27029 1.77656 1.22434 0.86850 1.18143 1.23244 1.00960 0.74309 1.03771 1.24460 0.96931 0.88830 0.93226 1.87146 1.81228 1.11948 1.38261 1.23559 0.98590 0.98342 0.91888 1.22641 0.96067 1.02362 0.95244 1.22737 0.98961 0.99579 0.95770 1.22544 0.99958 0.96664 0.96252 0.93404 0.77815 0.90690 0.91175 0.76174 0.81591 0.86943 0.87662 0.88716 0.85171 0.90990 0.89834 0.90031 0.92282 0.91348 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.65 9.98 -15.06 -0.15 -6.80 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.70 -17.24 4.91 -52.99 -0.26 -17.50 16 10 C 0.20 3.88 4.35 -67.48 -0.29 3.58 16 11 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 12 C -0.18 -3.31 7.68 -25.75 -0.20 -3.51 16 13 C 0.14 2.38 4.01 -67.49 -0.27 2.11 16 14 H 0.12 2.37 7.54 -51.93 -0.39 1.97 16 15 N -0.70 -10.45 5.29 -54.36 -0.29 -10.74 16 16 C 0.60 9.81 7.83 -12.39 -0.10 9.71 16 17 O -0.52 -10.30 16.54 5.30 0.09 -10.21 16 18 C 0.06 0.88 7.09 -82.96 -0.59 0.29 16 19 C -0.21 -2.80 10.60 -39.30 -0.42 -3.22 16 20 C 0.23 2.60 8.32 -16.54 -0.14 2.46 16 21 N -0.41 -4.29 5.01 -59.64 -0.30 -4.59 16 22 N -0.22 -2.85 12.39 33.32 0.41 -2.44 16 23 C 0.10 0.44 8.10 -2.67 -0.02 0.42 16 24 C 0.04 0.14 8.09 38.02 0.31 0.45 16 25 O -0.28 -2.42 11.19 -20.13 -0.23 -2.64 16 26 C -0.12 -1.97 0.91 -154.72 -0.14 -2.11 16 27 C -0.13 -2.04 7.60 -26.28 -0.20 -2.24 16 28 C -0.13 -1.83 8.08 -25.75 -0.21 -2.04 16 29 C -0.12 -1.52 7.16 -26.28 -0.19 -1.71 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.39 10.22 7.48 -40.82 -0.31 9.92 16 32 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.40 5.21 6.62 -40.82 -0.27 4.94 16 35 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.13 0.00 8.14 -51.93 -0.42 -0.42 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.60 7.51 -51.93 -0.39 1.21 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.88 6.96 -51.93 -0.36 0.52 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -34.23 374.38 -8.26 -42.50 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -6.34 Total: 12.87 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.70 Total: -2.99 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.29 Total: -62.53 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.14 Total: -12.86 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.23 -8.26 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078647971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.508 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds