Wall clock time and date at job start Tue Mar 31 2020 16:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48503 * 109.46903 * 270.00075 * 3 2 1 5 5 H 1.48500 * 109.47131 * 29.99780 * 3 2 1 6 6 H 1.48493 * 109.47224 * 150.00103 * 3 2 1 7 7 C 1.38811 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99847 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99916 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99665 * 179.97438 * 9 7 2 11 11 H 1.08998 * 112.88743 * 333.16977 * 10 9 7 12 12 C 1.53961 * 113.65731 * 104.51170 * 10 9 7 13 13 C 1.53945 * 87.29318 * 89.82975 * 12 10 9 14 14 H 1.08997 * 113.66378 * 270.16598 * 13 12 10 15 15 N 1.46497 * 113.66248 * 139.20637 * 13 12 10 16 16 C 1.34778 * 120.00363 * 104.50319 * 15 13 12 17 17 O 1.21573 * 119.99773 * 0.02562 * 16 15 13 18 18 C 1.47721 * 120.00462 * 180.02562 * 16 15 13 19 19 C 1.40945 * 125.97429 * 180.02562 * 18 16 15 20 20 C 1.36166 * 107.94838 * 180.32261 * 19 18 16 21 21 N 1.35810 * 107.31421 * 359.22816 * 20 19 18 22 22 N 1.31840 * 125.97054 * 359.97208 * 18 16 15 23 23 C 1.47425 * 108.07369 * 180.96335 * 21 20 19 24 24 C 1.54644 * 102.36095 * 15.43881 * 23 21 20 25 25 O 1.36121 * 140.88155 * 179.64224 * 20 19 18 26 26 C 1.52905 * 113.74848 * 201.73463 * 10 9 7 27 27 C 1.52909 * 121.13303 * 36.14590 * 26 10 9 28 28 C 1.53952 * 86.78422 * 100.81136 * 27 26 10 29 29 C 1.52907 * 121.13544 * 144.69807 * 26 10 9 30 30 H 0.97003 * 119.99931 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00383 * 0.02562 * 9 7 2 32 32 H 1.09003 * 113.57871 * 335.22533 * 12 10 9 33 33 H 1.08997 * 113.64914 * 204.44512 * 12 10 9 34 34 H 0.97005 * 119.99993 * 284.50485 * 15 13 12 35 35 H 1.08002 * 126.02297 * 0.04908 * 19 18 16 36 36 H 1.09000 * 110.83063 * 133.65876 * 23 21 20 37 37 H 1.09004 * 110.82509 * 257.01920 * 23 21 20 38 38 H 1.09001 * 110.85109 * 93.36411 * 24 23 21 39 39 H 1.09003 * 110.85471 * 217.00108 * 24 23 21 40 40 H 1.08997 * 113.66381 * 215.28116 * 27 26 10 41 41 H 1.08999 * 113.66662 * 346.34434 * 27 26 10 42 42 H 1.09003 * 113.58222 * 270.13419 * 28 27 26 43 43 H 1.08997 * 113.65472 * 139.34396 * 28 27 26 44 44 H 1.09001 * 113.66020 * 13.66430 * 29 26 10 45 45 H 1.09004 * 113.66355 * 144.71468 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0456 -3.5757 -0.4556 12 6 2.0619 -4.3691 1.3632 13 6 0.7697 -5.0762 0.9159 14 1 -0.1388 -4.5328 1.1756 15 7 0.7138 -6.4913 1.2908 16 6 -0.0662 -6.8865 2.3165 17 8 -0.7238 -6.0687 2.9302 18 6 -0.1221 -8.3133 2.6949 19 6 -0.8912 -8.8631 3.7403 20 6 -0.6621 -10.2051 3.7688 21 7 0.2068 -10.4882 2.7642 22 7 0.5379 -9.2952 2.1132 23 6 0.4488 -11.9425 2.7651 24 6 -0.7076 -12.4699 3.6460 25 8 -1.0198 -11.3231 4.4580 26 6 1.2396 -4.8399 -0.5198 27 6 0.2372 -4.6681 -1.6617 28 6 1.3140 -5.2712 -2.5820 29 6 1.8934 -5.9582 -1.3321 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 1.9199 -3.6945 2.2076 33 1 2.9046 -5.0466 1.5004 34 1 1.2382 -7.1439 0.8009 35 1 -1.5434 -8.3157 4.4047 36 1 0.3823 -12.3470 1.7551 37 1 1.4163 -12.1741 3.2106 38 1 -1.5627 -12.7559 3.0334 39 1 -0.3753 -13.3040 4.2640 40 1 -0.6514 -5.2913 -1.5613 41 1 0.0033 -3.6274 -1.8857 42 1 1.9803 -4.5275 -3.0192 43 1 0.9180 -5.9695 -3.3193 44 1 2.9827 -5.9481 -1.2927 45 1 1.4703 -6.9441 -1.1390 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078647971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:31 Heat of formation + Delta-G solvation = 71.752867 kcal Electronic energy + Delta-G solvation = -28264.478122 eV Core-core repulsion = 24286.165967 eV Total energy + Delta-G solvation = -3978.312156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.38710 -41.93258 -40.42850 -39.21155 -36.49534 -35.70252 -34.39059 -33.98910 -31.73140 -30.86274 -29.93002 -26.80598 -26.75427 -25.66370 -25.32620 -24.17496 -23.32346 -22.49153 -21.68872 -21.19426 -19.51723 -19.08560 -18.54120 -18.10555 -17.55508 -17.36278 -16.72929 -16.63610 -16.35451 -16.19835 -16.01120 -15.77737 -15.42628 -15.09351 -14.87285 -14.41673 -14.26365 -13.97743 -13.88494 -13.54392 -13.29273 -13.13588 -13.11538 -12.81015 -12.67472 -12.62167 -12.27349 -12.19220 -12.14559 -12.01086 -11.78389 -11.48850 -11.31150 -11.07165 -10.90498 -10.71797 -10.33691 -9.93406 -9.70368 -8.99776 -7.93056 -5.22193 0.08961 0.77330 0.91376 1.47916 1.49962 1.58250 1.66786 2.16264 2.23745 2.56014 3.00593 3.36051 3.38182 3.40387 3.54862 3.75085 3.81136 3.85616 3.95474 4.03258 4.09680 4.19032 4.23225 4.24247 4.44043 4.47691 4.56744 4.63452 4.64728 4.73782 4.78174 4.84761 4.89263 5.04417 5.11752 5.13983 5.16002 5.24977 5.29356 5.40128 5.54601 5.60696 5.69483 5.75883 6.20690 6.28716 6.51193 7.05046 7.34185 8.09711 8.32553 9.30267 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.002472 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.736037 B =11323.481107 C =12043.090802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.299 1.299 6 H -0.269 1.269 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.715 5.715 10 C 0.183 3.817 11 H 0.074 0.926 12 C -0.171 4.171 13 C 0.144 3.856 14 H 0.077 0.923 15 N -0.681 5.681 16 C 0.596 3.404 17 O -0.564 6.564 18 C 0.044 3.956 19 C -0.242 4.242 20 C 0.242 3.758 21 N -0.407 5.407 22 N -0.224 5.224 23 C 0.087 3.913 24 C 0.039 3.961 25 O -0.291 6.291 26 C -0.111 4.111 27 C -0.134 4.134 28 C -0.123 4.123 29 C -0.098 4.098 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.041 0.959 33 H 0.101 0.899 34 H 0.417 0.583 35 H 0.158 0.842 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.111 0.889 39 H 0.170 0.830 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -32.941 1.863 33.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.212 1.212 5 H -0.226 1.226 6 H -0.194 1.194 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.352 5.352 10 C 0.071 3.929 11 H 0.092 0.908 12 C -0.213 4.213 13 C 0.039 3.961 14 H 0.095 0.905 15 N -0.332 5.332 16 C 0.380 3.620 17 O -0.440 6.440 18 C -0.122 4.122 19 C -0.273 4.273 20 C 0.073 3.927 21 N -0.205 5.205 22 N -0.056 5.056 23 C -0.031 4.031 24 C -0.035 4.035 25 O -0.197 6.197 26 C -0.114 4.114 27 C -0.171 4.171 28 C -0.160 4.160 29 C -0.135 4.135 30 H 0.059 0.941 31 H 0.205 0.795 32 H 0.060 0.940 33 H 0.119 0.881 34 H 0.255 0.745 35 H 0.176 0.824 36 H 0.157 0.843 37 H 0.145 0.855 38 H 0.129 0.871 39 H 0.188 0.812 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.347 -32.661 1.508 32.867 hybrid contribution -0.744 1.402 0.743 1.752 sum 2.604 -31.259 2.251 31.448 Atomic orbital electron populations 1.69840 1.06705 1.25998 1.59448 1.25583 0.96328 1.01165 1.03768 0.85131 0.77659 0.79485 0.77424 1.21221 1.22624 1.19371 1.19654 0.91570 0.84894 1.40975 0.90181 1.42242 1.05337 1.00386 1.87195 1.20851 0.94690 0.83886 0.93423 0.90762 1.24186 0.97642 0.99441 1.00070 1.22122 0.98005 0.79916 0.96024 0.90453 1.45711 1.45277 1.09772 1.32419 1.17143 0.79424 0.84969 0.80425 1.90829 1.45400 1.53574 1.54222 1.21637 0.99494 0.93278 0.97756 1.20131 1.11219 0.89818 1.06094 1.20639 0.92794 0.90619 0.88677 1.51104 1.35561 1.08037 1.25808 1.77512 1.22189 0.87544 1.18326 1.23862 1.02536 0.70780 1.05932 1.24976 0.97305 0.87791 0.93469 1.87162 1.81041 1.12405 1.39127 1.23414 0.98531 0.98117 0.91291 1.22677 0.97347 1.00597 0.96526 1.22684 0.97432 0.99611 0.96303 1.22563 1.01031 0.96134 0.93806 0.94117 0.79453 0.94018 0.88111 0.74482 0.82414 0.84312 0.85500 0.87068 0.81235 0.90057 0.93607 0.90872 0.89634 0.89461 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.24 -13.42 9.98 84.03 0.84 -12.58 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.71 -36.67 4.91 -321.55 -1.58 -38.25 16 10 C 0.18 7.23 4.35 45.28 0.20 7.43 16 11 H 0.07 2.83 8.12 -2.39 -0.02 2.81 16 12 C -0.17 -6.33 7.68 31.23 0.24 -6.09 16 13 C 0.14 5.11 4.01 45.28 0.18 5.29 16 14 H 0.08 3.40 7.54 -2.39 -0.02 3.39 16 15 N -0.68 -20.22 5.29 -444.16 -2.35 -22.57 16 16 C 0.60 20.24 7.83 86.75 0.68 20.92 16 17 O -0.56 -24.00 16.54 -3.95 -0.07 -24.07 16 18 C 0.04 1.26 7.09 42.31 0.30 1.56 16 19 C -0.24 -6.54 10.60 22.45 0.24 -6.30 16 20 C 0.24 5.08 8.32 83.59 0.70 5.77 16 21 N -0.41 -7.33 5.01 -453.34 -2.27 -9.60 16 22 N -0.22 -5.40 12.39 -48.51 -0.60 -6.00 16 23 C 0.09 0.41 8.10 86.76 0.70 1.11 16 24 C 0.04 0.09 8.09 72.54 0.59 0.68 16 25 O -0.29 -4.29 11.19 -94.93 -1.06 -5.35 16 26 C -0.11 -3.56 0.91 -52.32 -0.05 -3.60 16 27 C -0.13 -4.35 7.60 30.89 0.23 -4.12 16 28 C -0.12 -3.09 8.08 31.23 0.25 -2.84 16 29 C -0.10 -2.22 7.16 30.88 0.22 -2.00 16 30 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.37 21.02 7.48 -92.71 -0.69 20.33 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 34 H 0.42 9.92 6.62 -92.70 -0.61 9.31 16 35 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.13 0.13 8.14 -2.38 -0.02 0.11 16 38 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.17 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.05 1.84 7.51 -2.39 -0.02 1.82 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.10 1.87 6.96 -2.39 -0.02 1.85 16 Total: -1.00 -80.12 374.38 -0.10 -80.22 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: -0.27 Total: 36.01 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.79 Total: 1.22 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -6.52 Total: -137.18 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.13 Total: -29.42 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -80.12 -0.10 -80.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078647971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.974 kcal (2) G-P(sol) polarization free energy of solvation -80.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds