Wall clock time and date at job start Tue Mar 31 2020 16:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00065 * 2 1 4 4 H 1.48498 * 109.46954 * 240.00043 * 3 2 1 5 5 H 1.48497 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47321 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99753 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00021 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.88359 * 23.65659 * 10 9 7 12 12 C 1.53947 * 113.74924 * 252.23224 * 10 9 7 13 13 C 1.53957 * 87.29654 * 270.25046 * 12 10 9 14 14 H 1.08999 * 113.74605 * 89.74708 * 13 12 10 15 15 N 1.46499 * 113.66372 * 220.79461 * 13 12 10 16 16 C 1.34777 * 119.99665 * 252.46373 * 15 13 12 17 17 O 1.21573 * 120.00276 * 359.72080 * 16 15 13 18 18 C 1.47716 * 119.99706 * 179.72381 * 16 15 13 19 19 C 1.40946 * 125.97368 * 179.97438 * 18 16 15 20 20 C 1.36170 * 107.95041 * 180.08577 * 19 18 16 21 21 N 1.35801 * 107.31577 * 359.64344 * 20 19 18 22 22 N 1.31838 * 125.97686 * 359.69009 * 18 16 15 23 23 C 1.47432 * 108.07361 * 180.65810 * 21 20 19 24 24 C 1.54646 * 102.34929 * 15.25931 * 23 21 20 25 25 O 1.36124 * 140.87720 * 179.13512 * 20 19 18 26 26 C 1.52908 * 86.77901 * 335.26633 * 13 12 10 27 27 C 1.52908 * 121.13642 * 259.17649 * 26 13 12 28 28 C 1.53946 * 86.78542 * 209.38235 * 27 26 13 29 29 C 1.52910 * 121.13509 * 150.61875 * 26 13 12 30 30 H 0.96997 * 120.00020 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99747 * 0.02562 * 9 7 2 32 32 H 1.09000 * 113.58267 * 155.64958 * 12 10 9 33 33 H 1.08999 * 113.57745 * 24.85198 * 12 10 9 34 34 H 0.97001 * 119.99790 * 72.18086 * 15 13 12 35 35 H 1.07997 * 126.02846 * 0.06535 * 19 18 16 36 36 H 1.08997 * 110.83107 * 133.47410 * 23 21 20 37 37 H 1.09001 * 110.82655 * 257.04873 * 23 21 20 38 38 H 1.09000 * 110.85377 * 93.35205 * 24 23 21 39 39 H 1.09001 * 110.85267 * 216.97686 * 24 23 21 40 40 H 1.09002 * 113.66478 * 323.85928 * 27 26 13 41 41 H 1.09008 * 113.65934 * 94.91137 * 27 26 13 42 42 H 1.08996 * 113.58314 * 270.13495 * 28 27 26 43 43 H 1.08999 * 113.65166 * 139.34935 * 28 27 26 44 44 H 1.09004 * 113.66092 * 265.08702 * 29 26 13 45 45 H 1.08995 * 113.66400 * 36.14687 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 3.0670 -3.5637 0.4037 12 6 1.9947 -4.4093 -1.3399 13 6 0.7260 -5.1010 -0.8086 14 1 -0.1949 -4.5645 -1.0372 15 7 0.6516 -6.5265 -1.1380 16 6 -0.2220 -6.9583 -2.0691 17 8 -0.9519 -6.1654 -2.6319 18 6 -0.2927 -8.3948 -2.4056 19 6 -1.1549 -8.9816 -3.3537 20 6 -0.9144 -10.3219 -3.3668 21 7 0.0704 -10.5646 -2.4638 22 7 0.4433 -9.3516 -1.8755 23 6 0.3556 -12.0111 -2.4758 24 6 -0.3267 -12.4718 -3.7849 25 8 -1.3382 -11.4649 -3.9724 26 6 1.2661 -4.8227 0.5946 27 6 1.9591 -5.9175 1.4065 28 6 1.4420 -5.1927 2.6624 29 6 0.3212 -4.6155 1.7788 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0016 32 1 2.8300 -5.0918 -1.4970 33 1 1.8113 -3.7599 -2.1959 34 1 1.2340 -7.1590 -0.6890 35 1 -1.8789 -8.4603 -3.9623 36 1 1.4294 -12.1941 -2.5132 37 1 -0.0926 -12.5016 -1.6118 38 1 0.3816 -12.4692 -4.6134 39 1 -0.7775 -13.4565 -3.6618 40 1 1.5269 -6.9079 1.2638 41 1 3.0452 -5.9102 1.3132 42 1 2.1290 -4.4375 3.0440 43 1 1.0813 -5.8671 3.4391 44 1 0.0988 -3.5681 1.9829 45 1 -0.5713 -5.2400 1.7408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078647972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:35 Heat of formation + Delta-G solvation = 97.814730 kcal Electronic energy + Delta-G solvation = -28261.577314 eV Core-core repulsion = 24284.395285 eV Total energy + Delta-G solvation = -3977.182028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.62005 -40.55398 -39.36328 -38.17819 -35.00266 -34.07078 -33.66397 -32.36087 -30.37695 -29.49572 -29.14871 -25.53216 -25.42266 -24.13740 -24.09345 -23.15193 -22.07631 -21.63520 -20.30813 -20.00850 -18.28104 -17.71212 -17.36024 -16.92951 -16.65915 -16.18619 -15.80956 -15.34296 -15.15994 -15.00389 -14.74539 -14.37044 -14.26818 -13.86822 -13.76698 -13.16919 -13.01675 -12.78107 -12.62957 -12.50081 -12.11626 -11.90597 -11.72738 -11.59146 -11.33669 -11.22432 -10.86180 -10.80340 -10.68659 -10.17052 -10.12539 -9.94959 -9.79790 -9.53589 -9.52994 -9.45267 -8.83236 -8.83191 -8.57706 -6.96731 -5.75679 -3.05396 1.08097 1.47810 1.86082 2.40153 3.26926 3.37644 3.45977 3.48104 3.50451 3.51538 4.02939 4.12990 4.43100 4.54797 4.56443 4.71368 4.82406 4.92933 4.94410 5.00913 5.08280 5.23738 5.28196 5.38126 5.47931 5.62030 5.70632 5.86721 5.97155 6.02135 6.04161 6.09054 6.12562 6.18100 6.25482 6.46887 6.49381 6.62365 6.68109 6.75730 6.83652 6.92046 7.09579 7.14763 7.69925 7.72759 8.29429 8.42402 9.53448 10.09693 10.44393 11.46226 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.002460 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.501306 B =11380.448767 C =12050.714951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.700 5.700 10 C 0.198 3.802 11 H 0.069 0.931 12 C -0.182 4.182 13 C 0.137 3.863 14 H 0.118 0.882 15 N -0.697 5.697 16 C 0.597 3.403 17 O -0.518 6.518 18 C 0.061 3.939 19 C -0.212 4.212 20 C 0.231 3.769 21 N -0.415 5.415 22 N -0.221 5.221 23 C 0.098 3.902 24 C 0.041 3.959 25 O -0.279 6.279 26 C -0.123 4.123 27 C -0.116 4.116 28 C -0.133 4.133 29 C -0.125 4.125 30 H 0.257 0.743 31 H 0.387 0.613 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.403 0.597 35 H 0.167 0.833 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.781 -28.569 -3.030 28.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.337 5.337 10 C 0.084 3.916 11 H 0.087 0.913 12 C -0.224 4.224 13 C 0.033 3.967 14 H 0.136 0.864 15 N -0.347 5.347 16 C 0.379 3.621 17 O -0.391 6.391 18 C -0.106 4.106 19 C -0.242 4.242 20 C 0.064 3.936 21 N -0.212 5.212 22 N -0.051 5.051 23 C -0.023 4.023 24 C -0.035 4.035 25 O -0.186 6.186 26 C -0.126 4.126 27 C -0.154 4.154 28 C -0.171 4.171 29 C -0.163 4.163 30 H 0.067 0.933 31 H 0.222 0.778 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.238 0.762 35 H 0.184 0.816 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.148 0.852 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.138 -28.186 -2.644 28.391 hybrid contribution -0.108 0.340 -0.440 0.566 sum 2.030 -27.846 -3.084 28.090 Atomic orbital electron populations 1.69654 1.05089 1.25929 1.56949 1.24761 0.95506 0.97725 1.02628 0.86259 0.78515 0.83501 0.77822 1.21234 1.21718 1.21262 1.19200 0.91018 0.83826 1.43490 0.91055 1.42102 1.05834 0.99082 1.86731 1.20620 0.94556 0.84626 0.91763 0.91315 1.24310 0.96285 0.99660 1.02139 1.22549 1.00024 0.78595 0.95510 0.86448 1.45951 1.38651 1.10370 1.39736 1.16830 0.80981 0.83967 0.80359 1.90856 1.42373 1.54000 1.51847 1.22136 0.96594 0.94389 0.97464 1.20110 1.08900 0.87263 1.07891 1.20751 0.92039 0.89817 0.91008 1.50665 1.31707 1.06555 1.32270 1.77655 1.21808 0.86119 1.19492 1.23249 1.04233 0.74754 1.00032 1.24464 0.90025 0.92905 0.96104 1.87153 1.40524 1.17520 1.73360 1.23623 0.98547 0.98427 0.92013 1.22539 0.99842 0.96755 0.96260 1.22733 0.99019 0.99534 0.95769 1.22633 0.96064 1.02445 0.95121 0.93335 0.77808 0.91133 0.90718 0.76165 0.81594 0.86921 0.87651 0.88728 0.85162 0.90641 0.91403 0.90054 0.92324 0.89818 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.70 -17.20 4.85 -52.99 -0.26 -17.46 16 10 C 0.20 3.87 4.36 -67.48 -0.29 3.58 16 11 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 12 C -0.18 -3.28 7.69 -25.75 -0.20 -3.47 16 13 C 0.14 2.36 4.04 -67.48 -0.27 2.09 16 14 H 0.12 2.39 7.47 -51.93 -0.39 2.00 16 15 N -0.70 -10.43 5.25 -54.35 -0.29 -10.71 16 16 C 0.60 9.79 7.83 -12.39 -0.10 9.69 16 17 O -0.52 -10.28 16.50 5.30 0.09 -10.20 16 18 C 0.06 0.88 7.09 -82.97 -0.59 0.29 16 19 C -0.21 -2.80 10.60 -39.30 -0.42 -3.21 16 20 C 0.23 2.59 8.32 -16.54 -0.14 2.45 16 21 N -0.41 -4.29 5.01 -59.63 -0.30 -4.58 16 22 N -0.22 -2.85 12.39 33.31 0.41 -2.44 16 23 C 0.10 0.44 8.10 -2.67 -0.02 0.42 16 24 C 0.04 0.14 8.08 38.02 0.31 0.45 16 25 O -0.28 -2.41 11.19 -20.13 -0.23 -2.64 16 26 C -0.12 -2.01 0.92 -154.71 -0.14 -2.15 16 27 C -0.12 -1.53 7.15 -26.29 -0.19 -1.72 16 28 C -0.13 -1.86 8.08 -25.75 -0.21 -2.07 16 29 C -0.13 -2.06 7.62 -26.28 -0.20 -2.26 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.39 10.24 7.61 -40.82 -0.31 9.93 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.40 5.21 6.73 -40.82 -0.27 4.94 16 35 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 36 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.13 0.00 8.14 -51.93 -0.42 -0.42 16 40 H 0.08 0.89 7.03 -51.93 -0.36 0.53 16 41 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -34.12 374.58 -8.27 -42.39 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.35 Total: 13.02 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.70 Total: -3.12 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: 0.30 Total: -62.44 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.14 Total: -12.83 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.12 -8.27 -42.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078647972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.209 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds