Wall clock time and date at job start Tue Mar 31 2020 16:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00065 * 2 1 4 4 H 1.48498 * 109.46954 * 240.00043 * 3 2 1 5 5 H 1.48497 * 109.47053 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47321 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99753 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00021 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.88359 * 23.65659 * 10 9 7 12 12 C 1.53947 * 113.74924 * 252.23224 * 10 9 7 13 13 C 1.53957 * 87.29654 * 270.25046 * 12 10 9 14 14 H 1.08999 * 113.74605 * 89.74708 * 13 12 10 15 15 N 1.46499 * 113.66372 * 220.79461 * 13 12 10 16 16 C 1.34777 * 119.99665 * 252.46373 * 15 13 12 17 17 O 1.21573 * 120.00276 * 359.72080 * 16 15 13 18 18 C 1.47716 * 119.99706 * 179.72381 * 16 15 13 19 19 C 1.40946 * 125.97368 * 179.97438 * 18 16 15 20 20 C 1.36170 * 107.95041 * 180.08577 * 19 18 16 21 21 N 1.35801 * 107.31577 * 359.64344 * 20 19 18 22 22 N 1.31838 * 125.97686 * 359.69009 * 18 16 15 23 23 C 1.47432 * 108.07361 * 180.65810 * 21 20 19 24 24 C 1.54646 * 102.34929 * 15.25931 * 23 21 20 25 25 O 1.36124 * 140.87720 * 179.13512 * 20 19 18 26 26 C 1.52908 * 86.77901 * 335.26633 * 13 12 10 27 27 C 1.52908 * 121.13642 * 259.17649 * 26 13 12 28 28 C 1.53946 * 86.78542 * 209.38235 * 27 26 13 29 29 C 1.52910 * 121.13509 * 150.61875 * 26 13 12 30 30 H 0.96997 * 120.00020 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99747 * 0.02562 * 9 7 2 32 32 H 1.09000 * 113.58267 * 155.64958 * 12 10 9 33 33 H 1.08999 * 113.57745 * 24.85198 * 12 10 9 34 34 H 0.97001 * 119.99790 * 72.18086 * 15 13 12 35 35 H 1.07997 * 126.02846 * 0.06535 * 19 18 16 36 36 H 1.08997 * 110.83107 * 133.47410 * 23 21 20 37 37 H 1.09001 * 110.82655 * 257.04873 * 23 21 20 38 38 H 1.09000 * 110.85377 * 93.35205 * 24 23 21 39 39 H 1.09001 * 110.85267 * 216.97686 * 24 23 21 40 40 H 1.09002 * 113.66478 * 323.85928 * 27 26 13 41 41 H 1.09008 * 113.65934 * 94.91137 * 27 26 13 42 42 H 1.08996 * 113.58314 * 270.13495 * 28 27 26 43 43 H 1.08999 * 113.65166 * 139.34935 * 28 27 26 44 44 H 1.09004 * 113.66092 * 265.08702 * 29 26 13 45 45 H 1.08995 * 113.66400 * 36.14687 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 3.0670 -3.5637 0.4037 12 6 1.9947 -4.4093 -1.3399 13 6 0.7260 -5.1010 -0.8086 14 1 -0.1949 -4.5645 -1.0372 15 7 0.6516 -6.5265 -1.1380 16 6 -0.2220 -6.9583 -2.0691 17 8 -0.9519 -6.1654 -2.6319 18 6 -0.2927 -8.3948 -2.4056 19 6 -1.1549 -8.9816 -3.3537 20 6 -0.9144 -10.3219 -3.3668 21 7 0.0704 -10.5646 -2.4638 22 7 0.4433 -9.3516 -1.8755 23 6 0.3556 -12.0111 -2.4758 24 6 -0.3267 -12.4718 -3.7849 25 8 -1.3382 -11.4649 -3.9724 26 6 1.2661 -4.8227 0.5946 27 6 1.9591 -5.9175 1.4065 28 6 1.4420 -5.1927 2.6624 29 6 0.3212 -4.6155 1.7788 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0016 32 1 2.8300 -5.0918 -1.4970 33 1 1.8113 -3.7599 -2.1959 34 1 1.2340 -7.1590 -0.6890 35 1 -1.8789 -8.4603 -3.9623 36 1 1.4294 -12.1941 -2.5132 37 1 -0.0926 -12.5016 -1.6118 38 1 0.3816 -12.4692 -4.6134 39 1 -0.7775 -13.4565 -3.6618 40 1 1.5269 -6.9079 1.2638 41 1 3.0452 -5.9102 1.3132 42 1 2.1290 -4.4375 3.0440 43 1 1.0813 -5.8671 3.4391 44 1 0.0988 -3.5681 1.9829 45 1 -0.5713 -5.2400 1.7408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078647972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:34 Heat of formation + Delta-G solvation = 71.691423 kcal Electronic energy + Delta-G solvation = -28262.710105 eV Core-core repulsion = 24284.395285 eV Total energy + Delta-G solvation = -3978.314820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.38839 -41.92442 -40.42787 -39.21249 -36.49001 -35.70185 -34.39008 -33.98734 -31.73097 -30.86236 -29.92993 -26.79915 -26.74501 -25.64564 -25.32615 -24.17516 -23.32456 -22.49184 -21.69135 -21.19409 -19.52491 -19.08853 -18.52382 -18.11208 -17.56664 -17.32850 -16.72747 -16.62392 -16.36859 -16.17211 -16.02324 -15.79184 -15.42226 -15.08655 -14.84651 -14.40708 -14.28362 -13.97569 -13.87685 -13.55134 -13.29177 -13.13711 -13.10997 -12.78052 -12.65938 -12.63158 -12.28311 -12.20825 -12.15354 -12.00827 -11.77931 -11.48566 -11.32120 -11.06461 -10.88812 -10.72136 -10.33527 -9.92107 -9.70408 -8.99756 -7.92484 -5.21799 0.09092 0.77397 0.91495 1.48102 1.51553 1.57379 1.66834 2.16387 2.23821 2.56480 3.00615 3.36203 3.38395 3.41465 3.55931 3.75775 3.81342 3.85819 3.96340 4.03669 4.09553 4.19396 4.23606 4.24251 4.44068 4.47556 4.57384 4.63596 4.65539 4.73778 4.78422 4.85138 4.89158 5.04414 5.11969 5.13773 5.16091 5.24968 5.29707 5.40459 5.54641 5.60999 5.69933 5.75803 6.20774 6.28902 6.51391 7.05112 7.34354 8.09986 8.32812 9.30607 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.002460 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.501306 B =11380.448767 C =12050.714951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.714 5.714 10 C 0.183 3.817 11 H 0.076 0.924 12 C -0.170 4.170 13 C 0.143 3.857 14 H 0.078 0.922 15 N -0.680 5.680 16 C 0.597 3.403 17 O -0.564 6.564 18 C 0.044 3.956 19 C -0.242 4.242 20 C 0.242 3.758 21 N -0.406 5.406 22 N -0.224 5.224 23 C 0.087 3.913 24 C 0.039 3.961 25 O -0.290 6.290 26 C -0.114 4.114 27 C -0.097 4.097 28 C -0.123 4.123 29 C -0.134 4.134 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.102 0.898 33 H 0.042 0.958 34 H 0.417 0.583 35 H 0.158 0.842 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.171 0.829 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.103 -32.684 -2.380 33.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.351 5.351 10 C 0.072 3.928 11 H 0.094 0.906 12 C -0.212 4.212 13 C 0.038 3.962 14 H 0.096 0.904 15 N -0.331 5.331 16 C 0.381 3.619 17 O -0.441 6.441 18 C -0.122 4.122 19 C -0.273 4.273 20 C 0.072 3.928 21 N -0.205 5.205 22 N -0.056 5.056 23 C -0.031 4.031 24 C -0.036 4.036 25 O -0.197 6.197 26 C -0.116 4.116 27 C -0.135 4.135 28 C -0.161 4.161 29 C -0.171 4.171 30 H 0.059 0.941 31 H 0.205 0.795 32 H 0.121 0.879 33 H 0.061 0.939 34 H 0.255 0.745 35 H 0.176 0.824 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.129 0.871 39 H 0.188 0.812 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.537 -32.397 -1.978 32.773 hybrid contribution -0.816 1.360 -0.697 1.732 sum 3.720 -31.037 -2.675 31.374 Atomic orbital electron populations 1.69834 1.06727 1.26081 1.59361 1.25590 0.96314 1.01190 1.03734 0.85199 0.77121 0.79131 0.78219 1.20540 1.22542 1.20046 1.19636 0.91578 0.84893 1.41136 0.90126 1.42239 1.05319 1.00408 1.87110 1.20854 0.94857 0.83834 0.93301 0.90566 1.24187 0.97743 0.99471 0.99825 1.22144 0.98026 0.79602 0.96418 0.90380 1.45701 1.38573 1.09441 1.39409 1.17142 0.80218 0.84878 0.79710 1.90828 1.44142 1.55612 1.53472 1.21636 0.98227 0.93352 0.98953 1.20130 1.09671 0.88776 1.08679 1.20639 0.91425 0.89856 0.90846 1.51104 1.30749 1.07779 1.30867 1.77511 1.21527 0.86901 1.19632 1.23866 1.06412 0.71260 1.01547 1.24978 0.89521 0.93000 0.96098 1.87169 1.42280 1.17350 1.72903 1.23474 0.98473 0.98206 0.91441 1.22551 1.00899 0.96284 0.93743 1.22682 0.97320 0.99562 0.96497 1.22665 0.97462 1.00537 0.96482 0.94117 0.79508 0.87928 0.93903 0.74477 0.82414 0.84328 0.85448 0.87119 0.81209 0.88272 0.89400 0.90860 0.89769 0.93648 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.07 13.06 21.65 0.28 -60.78 16 2 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 3 Si 0.97 46.99 29.55 68.60 2.03 49.01 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.24 -13.46 9.97 84.03 0.84 -12.63 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.71 -36.59 4.85 -321.56 -1.56 -38.15 16 10 C 0.18 7.21 4.36 45.28 0.20 7.41 16 11 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 12 C -0.17 -6.20 7.69 31.23 0.24 -5.96 16 13 C 0.14 5.06 4.04 45.28 0.18 5.24 16 14 H 0.08 3.44 7.47 -2.39 -0.02 3.42 16 15 N -0.68 -20.17 5.25 -444.14 -2.33 -22.50 16 16 C 0.60 20.21 7.83 86.75 0.68 20.89 16 17 O -0.56 -23.96 16.50 -3.95 -0.07 -24.03 16 18 C 0.04 1.25 7.09 42.31 0.30 1.55 16 19 C -0.24 -6.53 10.60 22.45 0.24 -6.29 16 20 C 0.24 5.06 8.32 83.60 0.70 5.76 16 21 N -0.41 -7.32 5.01 -453.34 -2.27 -9.59 16 22 N -0.22 -5.40 12.39 -48.51 -0.60 -6.00 16 23 C 0.09 0.41 8.10 86.76 0.70 1.11 16 24 C 0.04 0.09 8.08 72.54 0.59 0.68 16 25 O -0.29 -4.28 11.19 -94.96 -1.06 -5.34 16 26 C -0.11 -3.65 0.92 -52.31 -0.05 -3.69 16 27 C -0.10 -2.24 7.15 30.88 0.22 -2.02 16 28 C -0.12 -3.16 8.08 31.23 0.25 -2.91 16 29 C -0.13 -4.42 7.62 30.89 0.24 -4.19 16 30 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.37 21.05 7.61 -92.71 -0.71 20.34 16 32 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.42 9.92 6.73 -92.71 -0.62 9.29 16 35 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.14 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.17 -0.92 8.14 -2.39 -0.02 -0.94 16 40 H 0.10 1.89 7.03 -2.39 -0.02 1.88 16 41 H 0.09 1.76 8.14 -2.38 -0.02 1.75 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.04 1.85 7.58 -2.39 -0.02 1.83 16 45 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -79.88 374.58 -0.09 -79.96 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -0.29 Total: 36.45 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 5.79 Total: 0.97 kcal Atomic # 7 Polarization: -130.54 SS G_CDS: -6.48 Total: -137.02 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -1.13 Total: -29.37 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -79.88 -0.09 -79.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078647972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.655 kcal (2) G-P(sol) polarization free energy of solvation -79.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds