Wall clock time and date at job start Tue Mar 31 2020 17:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38551 * 120.01510 * 2 1 4 4 C 1.40070 * 117.81486 * 180.26705 * 3 2 1 5 5 C 1.48141 * 121.14755 * 179.73937 * 4 3 2 6 6 O 1.21511 * 120.00217 * 233.79082 * 5 4 3 7 7 N 1.34779 * 119.99766 * 53.79100 * 5 4 3 8 8 C 1.47046 * 120.03614 * 355.86279 * 7 5 4 9 9 C 1.53567 * 107.23462 * 130.35377 * 8 7 5 10 10 O 1.42619 * 108.29336 * 55.94383 * 9 8 7 11 11 C 1.42779 * 115.83269 * 295.38714 * 10 9 8 12 12 H 1.09006 * 111.86639 * 290.17154 * 11 10 9 13 13 C 1.54899 * 107.18187 * 166.93258 * 11 10 9 14 14 N 1.47070 * 107.20082 * 266.66815 * 13 11 10 15 15 C 1.36930 * 125.64083 * 180.21959 * 14 13 11 16 16 H 1.07998 * 119.99950 * 180.02562 * 15 14 13 17 17 C 1.38816 * 120.00051 * 0.02562 * 15 14 13 18 18 N 1.31610 * 120.00189 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99804 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47314 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46880 * 120.00300 * 19 17 15 22 22 H 1.48503 * 109.47194 * 240.00359 * 19 17 15 23 23 C 1.47611 * 108.71408 * 0.24139 * 14 13 11 24 24 C 1.45522 * 120.03608 * 175.84590 * 7 5 4 25 25 H 1.09002 * 110.29291 * 345.57515 * 24 7 5 26 26 C 1.39767 * 117.70933 * 359.46506 * 4 3 2 27 27 C 1.50695 * 120.17324 * 180.29426 * 26 4 3 28 28 N 1.31895 * 119.65515 * 0.28025 * 26 4 3 29 29 N 1.28278 * 122.32686 * 359.97438 * 28 26 4 30 30 H 1.08997 * 109.47018 * 270.28370 * 1 2 3 31 31 H 1.09004 * 109.46842 * 30.27602 * 1 2 3 32 32 H 1.08992 * 109.47207 * 150.27798 * 1 2 3 33 33 H 1.07999 * 121.09100 * 0.02562 * 3 2 1 34 34 H 1.08996 * 109.89843 * 10.92123 * 8 7 5 35 35 H 1.08990 * 109.90177 * 249.78876 * 8 7 5 36 36 H 1.09001 * 109.70240 * 296.23925 * 9 8 7 37 37 H 1.09005 * 109.69580 * 175.64321 * 9 8 7 38 38 H 1.08999 * 109.88644 * 26.05747 * 13 11 10 39 39 H 1.08994 * 109.89371 * 147.27098 * 13 11 10 40 40 H 0.97001 * 120.00607 * 179.97438 * 18 17 15 41 41 H 1.08995 * 110.42148 * 217.70616 * 23 14 13 42 42 H 1.09000 * 110.52563 * 95.28334 * 23 14 13 43 43 H 1.09003 * 109.46864 * 94.33569 * 27 26 4 44 44 H 1.09001 * 109.47302 * 214.33068 * 27 26 4 45 45 H 1.08998 * 109.47444 * 334.33441 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1459 -0.0058 5 6 4.4141 2.3834 -0.0119 6 8 5.2638 2.5474 -0.8650 7 7 4.2125 3.3275 0.9286 8 6 3.1247 3.1723 1.9058 9 6 3.7262 3.4125 3.2982 10 8 4.3467 4.6966 3.3025 11 6 5.4670 4.8492 2.4306 12 1 6.3299 4.2789 2.7747 13 6 5.7707 6.3652 2.3367 14 7 5.0501 6.8812 1.1630 15 6 5.0597 8.1796 0.7281 16 1 4.4947 8.4596 -0.1486 17 6 5.7958 9.1359 1.4141 18 7 6.4849 8.7946 2.4822 19 14 5.8095 10.9070 0.8204 20 1 4.9613 11.0291 -0.3925 21 1 5.2763 11.7910 1.8878 22 1 7.2013 11.3090 0.4940 23 6 4.3145 5.7680 0.5317 24 6 5.0713 4.5012 0.9785 25 1 5.9619 4.3441 0.3699 26 6 4.2017 -0.1155 0.0004 27 6 5.7037 -0.2379 0.0014 28 7 3.4483 -1.1980 0.0057 29 7 2.1668 -1.1419 0.0059 30 1 -0.3633 0.0051 1.0276 31 1 -0.3633 0.8875 -0.5181 32 1 -0.3633 -0.8924 -0.5095 33 1 1.6783 2.1453 0.0004 34 1 2.7147 2.1641 1.8476 35 1 2.3416 3.9043 1.7086 36 1 4.4691 2.6448 3.5150 37 1 2.9369 3.3832 4.0495 38 1 5.4215 6.8698 3.2376 39 1 6.8421 6.5219 2.2126 40 1 6.9996 9.4628 2.9614 41 1 4.3393 5.8629 -0.5538 42 1 3.2843 5.7406 0.8869 43 1 6.0592 -0.3400 1.0267 44 1 5.9970 -1.1161 -0.5739 45 1 6.1413 0.6536 -0.4479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083091394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:54 Heat of formation + Delta-G solvation = 26.116852 kcal Electronic energy + Delta-G solvation = -29596.160958 eV Core-core repulsion = 25615.869876 eV Total energy + Delta-G solvation = -3980.291082 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.79144 -40.40027 -38.55552 -35.93585 -35.18368 -34.71660 -33.81148 -32.27087 -30.29989 -29.96537 -28.01790 -27.57263 -27.14482 -25.37272 -24.38255 -23.48890 -23.05323 -21.03190 -20.41639 -18.98390 -18.09763 -17.74722 -17.15099 -16.73287 -16.17187 -15.93553 -15.56766 -15.20439 -15.02979 -14.67312 -14.60333 -14.25081 -13.82480 -13.81663 -13.74260 -13.38122 -13.01889 -12.91462 -12.76498 -12.69365 -12.41783 -12.29099 -11.90245 -11.42230 -11.31023 -11.25117 -11.09274 -10.84885 -10.71282 -10.61734 -10.38578 -10.17083 -10.04467 -9.88118 -9.78476 -9.74028 -9.64514 -8.73787 -8.49508 -6.93869 -5.79159 -3.12951 0.12370 0.47988 2.29440 2.60574 3.11417 3.37394 3.43036 3.45381 3.57197 3.83691 3.95647 3.99921 4.12657 4.40656 4.44670 4.65810 4.69703 4.80648 4.89810 5.02360 5.08102 5.11647 5.15133 5.23752 5.30289 5.34987 5.40971 5.43917 5.48028 5.55491 5.64804 5.67829 5.70640 5.77457 5.88413 5.97123 6.05909 6.34459 6.47515 6.63679 7.11846 7.20257 7.41619 7.67287 7.75962 7.83442 8.14418 8.34846 9.12327 9.72091 10.35654 11.33354 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.003074 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.933218 B = 9105.112610 C = 9209.080011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.061 3.939 3 C -0.086 4.086 4 C -0.115 4.115 5 C 0.562 3.438 6 O -0.516 6.516 7 N -0.584 5.584 8 C 0.062 3.938 9 C 0.049 3.951 10 O -0.362 6.362 11 C 0.055 3.945 12 H 0.074 0.926 13 C 0.188 3.812 14 N -0.600 5.600 15 C -0.228 4.228 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.138 3.862 24 C 0.098 3.902 25 H 0.114 0.886 26 C 0.109 3.891 27 C -0.117 4.117 28 N -0.237 5.237 29 N -0.229 5.229 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.254 0.746 41 H 0.044 0.956 42 H 0.024 0.976 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.217 -17.705 -0.436 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.084 4.084 3 C -0.116 4.116 4 C -0.129 4.129 5 C 0.348 3.652 6 O -0.391 6.391 7 N -0.316 5.316 8 C -0.061 4.061 9 C -0.030 4.030 10 O -0.281 6.281 11 C -0.004 4.004 12 H 0.092 0.908 13 C 0.063 3.937 14 N -0.327 5.327 15 C -0.356 4.356 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.010 3.990 24 C -0.006 4.006 25 H 0.131 0.869 26 C -0.036 4.036 27 C -0.175 4.175 28 N -0.079 5.079 29 N -0.072 5.072 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.175 0.825 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.780 -18.880 -0.706 20.834 hybrid contribution 0.010 2.234 -0.382 2.266 sum -8.771 -16.647 -1.088 18.847 Atomic orbital electron populations 1.20704 0.86830 1.04388 1.03931 1.22862 0.99333 0.89803 0.96377 1.22563 0.92981 1.00748 0.95268 1.21093 0.94749 0.95620 1.01461 1.17990 0.83187 0.82167 0.81878 1.90810 1.33903 1.78288 1.36143 1.47614 1.32539 1.20949 1.30544 1.22818 0.90429 1.02719 0.90090 1.22841 0.97473 0.87451 0.95190 1.87977 1.46381 1.30111 1.63582 1.24110 0.87544 1.01740 0.86964 0.90837 1.21419 0.96884 0.83524 0.91873 1.44353 1.55085 1.04156 1.29122 1.19088 1.25142 0.82375 1.08995 0.90170 1.24805 0.99466 0.98382 0.97610 1.69900 1.34595 1.32708 1.19771 0.85997 0.77335 0.84338 0.77783 1.20483 1.21683 1.21664 1.21574 0.94468 0.86247 0.96667 1.22631 0.94707 0.84244 0.99045 0.86853 1.22980 0.99472 0.88422 0.92712 1.20951 0.86835 1.05725 1.04026 1.73032 0.98994 1.26109 1.09802 1.72809 1.01713 1.24881 1.07824 0.89530 0.89984 0.89682 0.82485 0.89433 0.89395 0.93172 0.87909 0.91679 0.91904 0.93569 0.93731 0.95804 0.89626 0.89404 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.19 36.01 0.37 -0.20 16 2 C 0.06 0.57 6.86 -82.45 -0.57 0.01 16 3 C -0.09 -0.82 7.34 -38.78 -0.28 -1.11 16 4 C -0.11 -1.38 4.86 -104.57 -0.51 -1.89 16 5 C 0.56 8.06 6.65 -12.19 -0.08 7.98 16 6 O -0.52 -8.99 14.62 5.36 0.08 -8.91 16 7 N -0.58 -8.29 2.75 -165.45 -0.46 -8.74 16 8 C 0.06 0.70 5.41 -3.45 -0.02 0.68 16 9 C 0.05 0.59 7.02 37.45 0.26 0.85 16 10 O -0.36 -6.27 9.98 -35.23 -0.35 -6.63 16 11 C 0.06 1.01 4.02 -24.95 -0.10 0.91 16 12 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 13 C 0.19 4.41 5.04 -2.73 -0.01 4.40 16 14 N -0.60 -14.97 3.40 -169.98 -0.58 -15.55 16 15 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 16 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 17 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 18 N -0.92 -26.35 10.31 55.49 0.57 -25.77 16 19 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.14 2.83 6.80 -2.82 -0.02 2.81 16 24 C 0.10 1.72 3.17 -67.06 -0.21 1.51 16 25 H 0.11 2.15 7.12 -51.93 -0.37 1.78 16 26 C 0.11 1.33 6.91 -82.00 -0.57 0.77 16 27 C -0.12 -1.25 9.92 36.00 0.36 -0.89 16 28 N -0.24 -3.10 11.42 33.81 0.39 -2.72 16 29 N -0.23 -2.79 11.40 33.58 0.38 -2.41 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.16 1.15 7.44 -52.49 -0.39 0.76 16 34 H 0.09 0.77 4.91 -51.93 -0.25 0.52 16 35 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.73 7.32 -51.93 -0.38 1.35 16 39 H 0.06 1.60 7.43 -51.93 -0.39 1.22 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.49 7.32 -51.93 -0.38 0.11 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.10 1.21 5.69 -51.93 -0.30 0.91 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -32.82 358.90 -7.41 -40.23 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.20 Total: -0.80 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -1.63 Total: 9.16 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.31 Total: -55.20 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.27 Total: -15.53 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.82 -7.41 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083091394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.352 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds