Wall clock time and date at job start Tue Mar 31 2020 17:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38551 * 120.01510 * 2 1 4 4 C 1.40070 * 117.81486 * 180.26705 * 3 2 1 5 5 C 1.48141 * 121.14755 * 179.73937 * 4 3 2 6 6 O 1.21511 * 120.00217 * 233.79082 * 5 4 3 7 7 N 1.34779 * 119.99766 * 53.79100 * 5 4 3 8 8 C 1.47046 * 120.03614 * 355.86279 * 7 5 4 9 9 C 1.53567 * 107.23462 * 130.35377 * 8 7 5 10 10 O 1.42619 * 108.29336 * 55.94383 * 9 8 7 11 11 C 1.42779 * 115.83269 * 295.38714 * 10 9 8 12 12 H 1.09006 * 111.86639 * 290.17154 * 11 10 9 13 13 C 1.54899 * 107.18187 * 166.93258 * 11 10 9 14 14 N 1.47070 * 107.20082 * 266.66815 * 13 11 10 15 15 C 1.36930 * 125.64083 * 180.21959 * 14 13 11 16 16 H 1.07998 * 119.99950 * 180.02562 * 15 14 13 17 17 C 1.38816 * 120.00051 * 0.02562 * 15 14 13 18 18 N 1.31610 * 120.00189 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99804 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47314 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46880 * 120.00300 * 19 17 15 22 22 H 1.48503 * 109.47194 * 240.00359 * 19 17 15 23 23 C 1.47611 * 108.71408 * 0.24139 * 14 13 11 24 24 C 1.45522 * 120.03608 * 175.84590 * 7 5 4 25 25 H 1.09002 * 110.29291 * 345.57515 * 24 7 5 26 26 C 1.39767 * 117.70933 * 359.46506 * 4 3 2 27 27 C 1.50695 * 120.17324 * 180.29426 * 26 4 3 28 28 N 1.31895 * 119.65515 * 0.28025 * 26 4 3 29 29 N 1.28278 * 122.32686 * 359.97438 * 28 26 4 30 30 H 1.08997 * 109.47018 * 270.28370 * 1 2 3 31 31 H 1.09004 * 109.46842 * 30.27602 * 1 2 3 32 32 H 1.08992 * 109.47207 * 150.27798 * 1 2 3 33 33 H 1.07999 * 121.09100 * 0.02562 * 3 2 1 34 34 H 1.08996 * 109.89843 * 10.92123 * 8 7 5 35 35 H 1.08990 * 109.90177 * 249.78876 * 8 7 5 36 36 H 1.09001 * 109.70240 * 296.23925 * 9 8 7 37 37 H 1.09005 * 109.69580 * 175.64321 * 9 8 7 38 38 H 1.08999 * 109.88644 * 26.05747 * 13 11 10 39 39 H 1.08994 * 109.89371 * 147.27098 * 13 11 10 40 40 H 0.97001 * 120.00607 * 179.97438 * 18 17 15 41 41 H 1.08995 * 110.42148 * 217.70616 * 23 14 13 42 42 H 1.09000 * 110.52563 * 95.28334 * 23 14 13 43 43 H 1.09003 * 109.46864 * 94.33569 * 27 26 4 44 44 H 1.09001 * 109.47302 * 214.33068 * 27 26 4 45 45 H 1.08998 * 109.47444 * 334.33441 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1459 -0.0058 5 6 4.4141 2.3834 -0.0119 6 8 5.2638 2.5474 -0.8650 7 7 4.2125 3.3275 0.9286 8 6 3.1247 3.1723 1.9058 9 6 3.7262 3.4125 3.2982 10 8 4.3467 4.6966 3.3025 11 6 5.4670 4.8492 2.4306 12 1 6.3299 4.2789 2.7747 13 6 5.7707 6.3652 2.3367 14 7 5.0501 6.8812 1.1630 15 6 5.0597 8.1796 0.7281 16 1 4.4947 8.4596 -0.1486 17 6 5.7958 9.1359 1.4141 18 7 6.4849 8.7946 2.4822 19 14 5.8095 10.9070 0.8204 20 1 4.9613 11.0291 -0.3925 21 1 5.2763 11.7910 1.8878 22 1 7.2013 11.3090 0.4940 23 6 4.3145 5.7680 0.5317 24 6 5.0713 4.5012 0.9785 25 1 5.9619 4.3441 0.3699 26 6 4.2017 -0.1155 0.0004 27 6 5.7037 -0.2379 0.0014 28 7 3.4483 -1.1980 0.0057 29 7 2.1668 -1.1419 0.0059 30 1 -0.3633 0.0051 1.0276 31 1 -0.3633 0.8875 -0.5181 32 1 -0.3633 -0.8924 -0.5095 33 1 1.6783 2.1453 0.0004 34 1 2.7147 2.1641 1.8476 35 1 2.3416 3.9043 1.7086 36 1 4.4691 2.6448 3.5150 37 1 2.9369 3.3832 4.0495 38 1 5.4215 6.8698 3.2376 39 1 6.8421 6.5219 2.2126 40 1 6.9996 9.4628 2.9614 41 1 4.3393 5.8629 -0.5538 42 1 3.2843 5.7406 0.8869 43 1 6.0592 -0.3400 1.0267 44 1 5.9970 -1.1161 -0.5739 45 1 6.1413 0.6536 -0.4479 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083091394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:52 Heat of formation + Delta-G solvation = 3.243549 kcal Electronic energy + Delta-G solvation = -29597.152819 eV Core-core repulsion = 25615.869876 eV Total energy + Delta-G solvation = -3981.282943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.72879 -41.57802 -39.83771 -37.53776 -36.32164 -35.56399 -34.85363 -34.01828 -31.53667 -31.01580 -29.40324 -29.16426 -27.90737 -26.73104 -25.73940 -24.64866 -23.96072 -22.39056 -22.06141 -20.20411 -19.11648 -18.98465 -18.71066 -18.04667 -17.15131 -17.00308 -16.83882 -16.49679 -16.23992 -16.11570 -15.81247 -15.50403 -15.06750 -14.94182 -14.45888 -14.43099 -14.39341 -14.18748 -13.84589 -13.55287 -13.45073 -13.33588 -13.10634 -12.99993 -12.84626 -12.74427 -12.60856 -12.19416 -12.13485 -12.03166 -11.84019 -11.74127 -11.47501 -11.24116 -11.10798 -10.78836 -10.67305 -10.56686 -9.76209 -8.95420 -7.87900 -5.24309 -0.74869 -0.30751 1.19699 1.44262 1.48121 1.49611 1.58798 2.27012 2.48367 2.73570 2.79848 2.89190 3.17988 3.32468 3.35725 3.40581 3.55433 3.66081 3.80015 3.87485 3.96175 4.00080 4.10613 4.19945 4.24209 4.29010 4.35505 4.48772 4.54304 4.69385 4.73706 4.75559 4.76704 4.79859 4.80898 4.88849 5.05382 5.09372 5.21844 5.30099 5.38687 5.41033 5.65880 6.00406 6.13353 6.31648 6.70141 7.05279 7.51520 7.69848 8.33349 9.23035 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.003074 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.933218 B = 9105.112610 C = 9209.080011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.068 3.932 3 C -0.072 4.072 4 C -0.127 4.127 5 C 0.569 3.431 6 O -0.552 6.552 7 N -0.582 5.582 8 C 0.063 3.937 9 C 0.041 3.959 10 O -0.386 6.386 11 C 0.075 3.925 12 H 0.092 0.908 13 C 0.197 3.803 14 N -0.621 5.621 15 C -0.244 4.244 16 H 0.083 0.917 17 C -0.061 4.061 18 N -0.949 5.949 19 Si 0.980 3.020 20 H -0.267 1.267 21 H -0.291 1.291 22 H -0.292 1.292 23 C 0.139 3.861 24 C 0.116 3.884 25 H 0.097 0.903 26 C 0.101 3.899 27 C -0.115 4.115 28 N -0.259 5.259 29 N -0.253 5.253 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.186 0.814 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.135 0.865 38 H 0.027 0.973 39 H 0.030 0.970 40 H 0.249 0.751 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.801 -18.937 -0.425 22.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.077 4.077 3 C -0.101 4.101 4 C -0.141 4.141 5 C 0.356 3.644 6 O -0.430 6.430 7 N -0.313 5.313 8 C -0.058 4.058 9 C -0.035 4.035 10 O -0.305 6.305 11 C 0.016 3.984 12 H 0.109 0.891 13 C 0.072 3.928 14 N -0.348 5.348 15 C -0.372 4.372 16 H 0.101 0.899 17 C -0.254 4.254 18 N -0.598 5.598 19 Si 0.809 3.191 20 H -0.191 1.191 21 H -0.218 1.218 22 H -0.219 1.219 23 C 0.013 3.987 24 C 0.010 3.990 25 H 0.115 0.885 26 C -0.044 4.044 27 C -0.173 4.173 28 N -0.100 5.100 29 N -0.095 5.095 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.203 0.797 34 H 0.136 0.864 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.153 0.847 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.408 -20.170 -0.697 23.183 hybrid contribution 0.695 2.543 -0.388 2.664 sum -10.713 -17.628 -1.085 20.656 Atomic orbital electron populations 1.20891 0.83859 1.05554 1.05497 1.23433 1.01036 0.88792 0.94417 1.22901 0.91825 1.02100 0.93293 1.20880 0.95625 0.94104 1.03506 1.18266 0.82672 0.82513 0.80958 1.90799 1.35538 1.79035 1.37603 1.47570 1.32807 1.19674 1.31283 1.23051 0.89449 1.04790 0.88541 1.23224 0.98354 0.85267 0.96692 1.87915 1.46020 1.33426 1.63114 1.23677 0.88974 0.97953 0.87794 0.89083 1.21056 0.94813 0.87032 0.89945 1.44604 1.55619 1.04635 1.29922 1.19446 1.24916 0.83830 1.09039 0.89900 1.25635 0.99532 1.02280 0.97974 1.70120 1.35292 1.33529 1.20816 0.84985 0.77127 0.79463 0.77562 1.19090 1.21766 1.21860 1.21642 0.94745 0.86352 0.95959 1.22099 0.94336 0.84536 0.97991 0.88476 1.23112 0.99940 0.88486 0.92889 1.20929 0.86328 1.05166 1.04868 1.73009 0.99657 1.26501 1.10848 1.72749 1.01524 1.26502 1.08703 0.87570 0.87748 0.89615 0.79654 0.86380 0.88519 0.92051 0.84689 0.95485 0.95150 0.94130 0.94415 0.94793 0.88276 0.88580 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.19 71.24 0.73 0.03 16 2 C 0.07 1.05 6.86 42.63 0.29 1.34 16 3 C -0.07 -1.11 7.34 22.79 0.17 -0.94 16 4 C -0.13 -2.77 4.86 -19.83 -0.10 -2.86 16 5 C 0.57 15.48 6.65 86.87 0.58 16.05 16 6 O -0.55 -19.18 14.62 -3.75 -0.05 -19.24 16 7 N -0.58 -15.38 2.75 -795.67 -2.19 -17.57 16 8 C 0.06 1.18 5.41 86.47 0.47 1.65 16 9 C 0.04 0.86 7.02 72.17 0.51 1.37 16 10 O -0.39 -12.84 9.98 -148.98 -1.49 -14.32 16 11 C 0.08 2.74 4.02 31.75 0.13 2.87 16 12 H 0.09 3.00 8.14 -2.38 -0.02 2.98 16 13 C 0.20 9.62 5.04 86.92 0.44 10.06 16 14 N -0.62 -31.77 3.40 -691.71 -2.35 -34.13 16 15 C -0.24 -13.59 10.28 84.04 0.86 -12.73 16 16 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 17 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 18 N -0.95 -56.23 10.31 21.65 0.22 -56.01 16 19 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 C 0.14 5.72 6.80 86.57 0.59 6.31 16 24 C 0.12 4.04 3.17 46.08 0.15 4.19 16 25 H 0.10 3.74 7.12 -2.39 -0.02 3.73 16 26 C 0.10 2.34 6.91 42.92 0.30 2.63 16 27 C -0.11 -2.37 9.92 71.23 0.71 -1.67 16 28 N -0.26 -6.39 11.42 -46.94 -0.54 -6.92 16 29 N -0.25 -5.60 11.40 -47.68 -0.54 -6.14 16 30 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.31 8.09 -2.39 -0.02 0.29 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.19 1.76 7.44 -2.91 -0.02 1.74 16 34 H 0.12 1.53 4.91 -2.39 -0.01 1.52 16 35 H 0.10 1.72 7.58 -2.39 -0.02 1.70 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.14 1.99 8.14 -2.38 -0.02 1.98 16 38 H 0.03 1.51 7.32 -2.39 -0.02 1.49 16 39 H 0.03 1.65 7.43 -2.39 -0.02 1.63 16 40 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.03 1.34 7.32 -2.39 -0.02 1.32 16 43 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.08 2.00 5.69 -2.39 -0.01 1.98 16 Total: -1.00 -74.87 358.90 2.38 -72.49 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.02 Total: 9.09 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 6.27 Total: 25.35 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -5.40 Total: -120.77 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -1.54 Total: -33.56 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.87 2.38 -72.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083091394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.732 kcal (2) G-P(sol) polarization free energy of solvation -74.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds