Wall clock time and date at job start Tue Mar 31 2020 16:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48501 * 109.46684 * 239.99812 * 3 2 1 5 5 H 1.48501 * 109.47362 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47086 * 120.00296 * 3 2 1 7 7 C 1.38809 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00183 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.46771 * 125.36520 * 359.97438 * 9 7 2 11 11 C 1.53906 * 107.62850 * 178.83276 * 10 9 7 12 12 H 1.09003 * 109.52744 * 100.77340 * 11 10 9 13 13 O 1.40858 * 110.30217 * 221.40710 * 11 10 9 14 14 C 1.41323 * 118.30492 * 68.00501 * 13 11 10 15 15 C 1.51955 * 111.60856 * 56.90070 * 14 13 11 16 16 N 1.44959 * 111.93705 * 319.68766 * 15 14 13 17 17 C 1.34780 * 117.34043 * 203.73267 * 16 15 14 18 18 O 1.21284 * 120.00202 * 177.40885 * 17 16 15 19 19 C 1.50703 * 119.99725 * 357.40542 * 17 16 15 20 20 H 1.08995 * 115.56102 * 34.30096 * 19 17 16 21 21 C 1.53000 * 117.49735 * 248.60723 * 19 17 16 22 22 C 1.53002 * 60.03264 * 252.52410 * 21 19 17 23 23 H 1.09002 * 117.49644 * 107.50263 * 22 21 19 24 24 C 1.50701 * 117.50111 * 252.50105 * 22 21 19 25 25 C 1.34668 * 126.59084 * 33.62802 * 24 22 21 26 26 N 1.34124 * 108.02281 * 179.97438 * 25 24 22 27 27 C 1.30503 * 109.25431 * 0.02562 * 26 25 24 28 28 N 1.35037 * 108.70035 * 359.76768 * 27 26 25 29 29 H 0.96998 * 126.40302 * 180.26585 * 28 27 26 30 30 C 1.44548 * 125.32586 * 24.02198 * 16 15 14 31 31 H 1.08998 * 109.64579 * 106.17616 * 30 16 15 32 32 C 1.46871 * 125.35977 * 179.97438 * 9 7 2 33 33 H 0.97001 * 119.99810 * 359.97438 * 1 2 3 34 34 H 1.08999 * 109.82390 * 59.29830 * 10 9 7 35 35 H 1.09002 * 109.89245 * 298.39224 * 10 9 7 36 36 H 1.09002 * 109.05437 * 296.34828 * 14 13 11 37 37 H 1.09006 * 108.99416 * 177.40727 * 14 13 11 38 38 H 1.09004 * 108.98590 * 199.05961 * 15 14 13 39 39 H 1.08996 * 108.99135 * 80.32244 * 15 14 13 40 40 H 1.09005 * 117.49740 * 145.02416 * 21 19 17 41 41 H 1.09000 * 117.50007 * 0.02562 * 21 19 17 42 42 H 1.07997 * 125.98787 * 359.97220 * 25 24 22 43 43 H 1.08000 * 125.64841 * 180.02562 * 27 26 25 44 44 H 1.08996 * 110.07293 * 317.00852 * 32 9 7 45 45 H 1.08997 * 110.07093 * 78.48120 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1358 -2.5252 0.0005 11 6 -0.4628 -4.0289 -0.0293 12 1 -0.7259 -4.3645 0.9738 13 8 -1.5365 -4.2782 -0.9063 14 6 -1.3292 -4.0864 -2.2910 15 6 -0.1714 -4.9257 -2.8050 16 7 0.9381 -4.9468 -1.8725 17 6 2.1614 -5.2129 -2.3718 18 8 3.1307 -5.1963 -1.6429 19 6 2.3248 -5.5311 -3.8357 20 1 1.6480 -5.0058 -4.5095 21 6 2.7235 -6.9606 -4.2077 22 6 3.7395 -5.8245 -4.3415 23 1 4.5516 -5.7875 -3.6154 24 6 4.0905 -5.3651 -5.7332 25 6 3.2677 -5.3310 -6.7987 26 7 3.9625 -4.8597 -7.8447 27 6 5.1849 -4.6010 -7.4679 28 7 5.3056 -4.8978 -6.1561 29 1 6.1045 -4.7994 -5.6148 30 6 0.8388 -4.7115 -0.4497 31 1 0.9520 -5.6538 0.0863 32 6 1.9378 -3.7230 0.0005 33 1 -0.4850 0.8401 0.0004 34 1 -0.5528 -2.0385 -0.8811 35 1 -0.5506 -2.0746 0.9022 36 1 -1.1154 -3.0337 -2.4764 37 1 -2.2363 -4.3649 -2.8275 38 1 0.1710 -4.5139 -3.7544 39 1 -0.5178 -5.9464 -2.9672 40 1 2.3090 -7.3759 -5.1264 41 1 2.8672 -7.6711 -3.3936 42 1 2.2302 -5.6307 -6.8092 43 1 5.9688 -4.2099 -8.0995 44 1 2.7744 -3.7509 -0.6975 45 1 2.2795 -3.9778 1.0037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083110084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:33 Heat of formation + Delta-G solvation = 67.425734 kcal Electronic energy + Delta-G solvation = -29577.431700 eV Core-core repulsion = 25598.931906 eV Total energy + Delta-G solvation = -3978.499794 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.26579 -40.85738 -38.81878 -36.74814 -35.72627 -34.82814 -32.67656 -32.36643 -30.00229 -29.50024 -27.97687 -27.56109 -25.00533 -24.05919 -23.46686 -23.15196 -21.79573 -20.95257 -20.45380 -19.63479 -18.45083 -18.32093 -17.47748 -16.80998 -16.59345 -15.69974 -15.49395 -15.12298 -14.87106 -14.80148 -14.55396 -14.43660 -14.15629 -13.93145 -13.68463 -13.49729 -13.07556 -12.56510 -12.40050 -12.20695 -12.09324 -11.91300 -11.40311 -11.12006 -11.07397 -11.00295 -10.74701 -10.65049 -10.58696 -10.38645 -10.18801 -10.16017 -10.11515 -9.71661 -9.38499 -8.89828 -8.59293 -8.42634 -8.22326 -6.79355 -5.70837 -3.03951 1.72208 2.57606 2.82162 2.95016 3.10607 3.40495 3.44605 3.45955 3.81921 4.07637 4.26801 4.48972 4.51951 4.53108 4.62725 4.83610 4.89637 4.92108 5.11214 5.16262 5.22339 5.29317 5.35257 5.42567 5.45903 5.52718 5.70611 5.71687 5.73237 5.77502 5.85567 6.00639 6.07758 6.11753 6.29455 6.50756 6.52174 6.82051 7.15690 7.16654 7.40365 7.48454 7.54373 7.72786 7.85664 7.89820 8.25504 8.36397 9.22854 9.83257 10.46732 11.40494 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010720 B = 0.004033 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.217975 B = 6941.164967 C = 8401.850297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.153 3.847 11 C 0.069 3.931 12 H 0.110 0.890 13 O -0.370 6.370 14 C 0.057 3.943 15 C 0.079 3.921 16 N -0.578 5.578 17 C 0.538 3.462 18 O -0.527 6.527 19 C -0.172 4.172 20 H 0.130 0.870 21 C -0.130 4.130 22 C -0.057 4.057 23 H 0.125 0.875 24 C 0.015 3.985 25 C -0.024 4.024 26 N -0.493 5.493 27 C 0.183 3.817 28 N -0.563 5.563 29 H 0.421 0.579 30 C 0.109 3.891 31 H 0.072 0.928 32 C 0.110 3.890 33 H 0.252 0.748 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.168 0.832 43 H 0.208 0.792 44 H 0.086 0.914 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -14.867 -11.126 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.010 3.990 12 H 0.127 0.873 13 O -0.288 6.288 14 C -0.021 4.021 15 C -0.044 4.044 16 N -0.310 5.310 17 C 0.326 3.674 18 O -0.405 6.405 19 C -0.193 4.193 20 H 0.147 0.853 21 C -0.168 4.168 22 C -0.077 4.077 23 H 0.143 0.857 24 C -0.101 4.101 25 C -0.172 4.172 26 N -0.212 5.212 27 C -0.101 4.101 28 N -0.166 5.166 29 H 0.259 0.741 30 C 0.005 3.995 31 H 0.090 0.910 32 C -0.016 4.016 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.185 0.815 43 H 0.225 0.775 44 H 0.103 0.897 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 3.591 -14.553 -11.467 18.873 hybrid contribution 1.322 1.154 0.922 1.982 sum 4.913 -13.400 -10.545 17.745 Atomic orbital electron populations 1.69938 1.04793 1.25093 1.57392 1.24775 0.95726 0.97578 1.02363 0.86201 0.78458 0.83244 0.77888 1.21323 1.21554 1.21136 1.18996 0.90403 0.82265 1.43467 0.90551 1.44216 1.01102 1.00250 1.87361 1.21663 0.85246 0.88082 1.02256 1.22993 0.84735 0.98612 0.92686 0.87278 1.86870 1.37204 1.88989 1.15693 1.22244 0.97279 0.99757 0.82772 1.21683 0.88650 1.01104 0.92990 1.46480 1.07257 1.69353 1.07900 1.19524 0.82810 0.76909 0.88181 1.90600 1.38891 1.51017 1.59960 1.22511 0.99523 1.01950 0.95350 0.85258 1.23117 1.00267 0.89739 1.03649 1.20135 0.93498 1.02433 0.91669 0.85684 1.20319 0.86713 1.07138 0.95919 1.22009 1.00156 1.06590 0.88470 1.70281 1.03214 1.17145 1.30555 1.24965 0.97377 1.04723 0.83028 1.43193 1.12175 1.49820 1.11434 0.74099 1.21849 0.99001 0.98906 0.79756 0.90999 1.22155 0.95840 0.84565 0.99042 0.93721 0.92637 0.93078 0.91998 0.87909 0.89916 0.91584 0.87190 0.87495 0.81488 0.77506 0.89679 0.95843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 10.26 55.49 0.57 -26.69 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.22 -6.39 10.25 -15.06 -0.15 -6.54 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.75 3.39 -171.23 -0.58 -16.33 16 10 C 0.15 3.73 5.02 -3.42 -0.02 3.71 16 11 C 0.07 1.32 3.82 -26.33 -0.10 1.22 16 12 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 13 O -0.37 -6.52 10.24 -34.46 -0.35 -6.88 16 14 C 0.06 0.83 6.72 36.63 0.25 1.08 16 15 C 0.08 1.03 5.91 -5.40 -0.03 0.99 16 16 N -0.58 -9.41 3.08 -168.53 -0.52 -9.92 16 17 C 0.54 8.62 6.93 -10.98 -0.08 8.55 16 18 O -0.53 -10.04 13.14 5.55 0.07 -9.97 16 19 C -0.17 -2.01 4.74 -91.73 -0.43 -2.45 16 20 H 0.13 1.37 6.13 -51.93 -0.32 1.05 16 21 C -0.13 -1.16 9.75 -26.73 -0.26 -1.42 16 22 C -0.06 -0.62 5.85 -91.73 -0.54 -1.16 16 23 H 0.13 1.47 7.67 -51.93 -0.40 1.07 16 24 C 0.02 0.16 6.92 -81.60 -0.56 -0.40 16 25 C -0.02 -0.28 10.94 -17.81 -0.19 -0.48 16 26 N -0.49 -6.18 11.25 -14.67 -0.17 -6.35 16 27 C 0.18 1.73 13.04 -90.38 -1.18 0.55 16 28 N -0.56 -5.10 6.15 -10.30 -0.06 -5.16 16 29 H 0.42 2.63 8.96 -40.82 -0.37 2.27 16 30 C 0.11 2.03 3.45 -68.24 -0.24 1.79 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 C 0.11 2.47 6.29 -3.04 -0.02 2.45 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.06 1.49 5.74 -51.93 -0.30 1.20 16 35 H 0.05 1.39 7.49 -51.93 -0.39 1.00 16 36 H 0.06 1.07 6.81 -51.93 -0.35 0.72 16 37 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.08 0.93 5.95 -51.93 -0.31 0.62 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.11 0.77 7.95 -51.93 -0.41 0.35 16 41 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.09 2.04 4.81 -52.41 -0.25 1.79 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -35.89 356.12 -10.37 -46.26 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.02 Total: 4.59 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -3.65 Total: 7.55 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: -0.76 Total: -64.45 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.28 Total: -16.85 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.89 -10.37 -46.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083110084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.686 kcal (2) G-P(sol) polarization free energy of solvation -35.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds