Wall clock time and date at job start Tue Mar 31 2020 16:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48501 * 109.46684 * 239.99812 * 3 2 1 5 5 H 1.48501 * 109.47362 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47086 * 120.00296 * 3 2 1 7 7 C 1.38809 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00183 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.46771 * 125.36520 * 359.97438 * 9 7 2 11 11 C 1.53906 * 107.62850 * 178.83276 * 10 9 7 12 12 H 1.09003 * 109.52744 * 100.77340 * 11 10 9 13 13 O 1.40858 * 110.30217 * 221.40710 * 11 10 9 14 14 C 1.41323 * 118.30492 * 68.00501 * 13 11 10 15 15 C 1.51955 * 111.60856 * 56.90070 * 14 13 11 16 16 N 1.44959 * 111.93705 * 319.68766 * 15 14 13 17 17 C 1.34780 * 117.34043 * 203.73267 * 16 15 14 18 18 O 1.21284 * 120.00202 * 177.40885 * 17 16 15 19 19 C 1.50703 * 119.99725 * 357.40542 * 17 16 15 20 20 H 1.08995 * 115.56102 * 34.30096 * 19 17 16 21 21 C 1.53000 * 117.49735 * 248.60723 * 19 17 16 22 22 C 1.53002 * 60.03264 * 252.52410 * 21 19 17 23 23 H 1.09002 * 117.49644 * 107.50263 * 22 21 19 24 24 C 1.50701 * 117.50111 * 252.50105 * 22 21 19 25 25 C 1.34668 * 126.59084 * 33.62802 * 24 22 21 26 26 N 1.34124 * 108.02281 * 179.97438 * 25 24 22 27 27 C 1.30503 * 109.25431 * 0.02562 * 26 25 24 28 28 N 1.35037 * 108.70035 * 359.76768 * 27 26 25 29 29 H 0.96998 * 126.40302 * 180.26585 * 28 27 26 30 30 C 1.44548 * 125.32586 * 24.02198 * 16 15 14 31 31 H 1.08998 * 109.64579 * 106.17616 * 30 16 15 32 32 C 1.46871 * 125.35977 * 179.97438 * 9 7 2 33 33 H 0.97001 * 119.99810 * 359.97438 * 1 2 3 34 34 H 1.08999 * 109.82390 * 59.29830 * 10 9 7 35 35 H 1.09002 * 109.89245 * 298.39224 * 10 9 7 36 36 H 1.09002 * 109.05437 * 296.34828 * 14 13 11 37 37 H 1.09006 * 108.99416 * 177.40727 * 14 13 11 38 38 H 1.09004 * 108.98590 * 199.05961 * 15 14 13 39 39 H 1.08996 * 108.99135 * 80.32244 * 15 14 13 40 40 H 1.09005 * 117.49740 * 145.02416 * 21 19 17 41 41 H 1.09000 * 117.50007 * 0.02562 * 21 19 17 42 42 H 1.07997 * 125.98787 * 359.97220 * 25 24 22 43 43 H 1.08000 * 125.64841 * 180.02562 * 27 26 25 44 44 H 1.08996 * 110.07293 * 317.00852 * 32 9 7 45 45 H 1.08997 * 110.07093 * 78.48120 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1358 -2.5252 0.0005 11 6 -0.4628 -4.0289 -0.0293 12 1 -0.7259 -4.3645 0.9738 13 8 -1.5365 -4.2782 -0.9063 14 6 -1.3292 -4.0864 -2.2910 15 6 -0.1714 -4.9257 -2.8050 16 7 0.9381 -4.9468 -1.8725 17 6 2.1614 -5.2129 -2.3718 18 8 3.1307 -5.1963 -1.6429 19 6 2.3248 -5.5311 -3.8357 20 1 1.6480 -5.0058 -4.5095 21 6 2.7235 -6.9606 -4.2077 22 6 3.7395 -5.8245 -4.3415 23 1 4.5516 -5.7875 -3.6154 24 6 4.0905 -5.3651 -5.7332 25 6 3.2677 -5.3310 -6.7987 26 7 3.9625 -4.8597 -7.8447 27 6 5.1849 -4.6010 -7.4679 28 7 5.3056 -4.8978 -6.1561 29 1 6.1045 -4.7994 -5.6148 30 6 0.8388 -4.7115 -0.4497 31 1 0.9520 -5.6538 0.0863 32 6 1.9378 -3.7230 0.0005 33 1 -0.4850 0.8401 0.0004 34 1 -0.5528 -2.0385 -0.8811 35 1 -0.5506 -2.0746 0.9022 36 1 -1.1154 -3.0337 -2.4764 37 1 -2.2363 -4.3649 -2.8275 38 1 0.1710 -4.5139 -3.7544 39 1 -0.5178 -5.9464 -2.9672 40 1 2.3090 -7.3759 -5.1264 41 1 2.8672 -7.6711 -3.3936 42 1 2.2302 -5.6307 -6.8092 43 1 5.9688 -4.2099 -8.0995 44 1 2.7744 -3.7509 -0.6975 45 1 2.2795 -3.9778 1.0037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083110084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:32 Heat of formation + Delta-G solvation = 42.591319 kcal Electronic energy + Delta-G solvation = -29578.508601 eV Core-core repulsion = 25598.931906 eV Total energy + Delta-G solvation = -3979.576695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.02794 -42.17459 -40.10511 -37.89362 -37.32617 -36.13721 -34.30881 -33.43313 -31.70443 -30.33710 -29.55996 -29.14020 -26.76235 -25.37675 -24.55277 -24.22191 -22.57798 -22.47133 -21.48055 -20.95939 -19.77160 -19.27226 -18.98726 -18.24267 -18.08905 -17.00929 -16.93953 -16.44756 -16.18629 -15.88071 -15.76319 -15.71258 -15.36245 -15.16957 -15.02049 -14.47917 -14.38717 -14.09178 -13.84149 -13.69021 -13.46461 -13.01656 -12.95422 -12.81861 -12.80656 -12.46783 -12.20466 -12.14895 -11.97821 -11.86495 -11.70189 -11.54813 -10.99616 -10.93297 -10.87205 -10.75948 -10.31900 -9.54464 -9.21332 -8.91562 -7.90424 -5.26513 0.94896 1.39376 1.42490 1.45886 1.49442 1.80467 2.17016 2.23364 2.43347 2.75982 2.95218 3.25744 3.28197 3.55348 3.66278 3.70247 3.70986 3.78975 3.92804 3.97053 4.04953 4.08559 4.14159 4.26154 4.38446 4.40677 4.52455 4.56032 4.60143 4.74429 4.77575 4.87878 4.90219 5.02240 5.07127 5.08510 5.33403 5.36477 5.45734 5.61990 5.64629 5.75323 6.13780 6.24704 6.42239 6.52403 7.04258 7.10745 7.13194 7.71504 8.33244 9.18500 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010720 B = 0.004033 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.217975 B = 6941.164967 C = 8401.850297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.977 3.023 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.619 5.619 10 C 0.164 3.836 11 C 0.084 3.916 12 H 0.127 0.873 13 O -0.372 6.372 14 C 0.050 3.950 15 C 0.076 3.924 16 N -0.586 5.586 17 C 0.531 3.469 18 O -0.566 6.566 19 C -0.180 4.180 20 H 0.144 0.856 21 C -0.097 4.097 22 C -0.062 4.062 23 H 0.110 0.890 24 C 0.004 3.996 25 C -0.037 4.037 26 N -0.535 5.535 27 C 0.189 3.811 28 N -0.561 5.561 29 H 0.432 0.568 30 C 0.122 3.878 31 H 0.094 0.906 32 C 0.107 3.893 33 H 0.248 0.752 34 H 0.024 0.976 35 H 0.013 0.987 36 H 0.025 0.975 37 H 0.147 0.853 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.138 0.862 41 H 0.110 0.890 42 H 0.182 0.818 43 H 0.244 0.756 44 H 0.072 0.928 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 -16.578 -12.894 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.252 4.252 3 Si 0.805 3.195 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.347 5.347 10 C 0.038 3.962 11 C 0.025 3.975 12 H 0.144 0.856 13 O -0.289 6.289 14 C -0.027 4.027 15 C -0.046 4.046 16 N -0.318 5.318 17 C 0.321 3.679 18 O -0.447 6.447 19 C -0.201 4.201 20 H 0.161 0.839 21 C -0.135 4.135 22 C -0.082 4.082 23 H 0.128 0.872 24 C -0.112 4.112 25 C -0.185 4.185 26 N -0.254 5.254 27 C -0.095 4.095 28 N -0.164 5.164 29 H 0.272 0.728 30 C 0.016 3.984 31 H 0.112 0.888 32 C -0.018 4.018 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.165 0.835 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.156 0.844 41 H 0.128 0.872 42 H 0.199 0.801 43 H 0.260 0.740 44 H 0.089 0.911 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.677 -16.296 -13.245 21.320 hybrid contribution 1.343 1.709 1.438 2.606 sum 5.020 -14.587 -11.807 19.427 Atomic orbital electron populations 1.70163 1.06058 1.25413 1.57924 1.25588 0.96644 1.00733 1.02244 0.85184 0.77267 0.78948 0.78119 1.20680 1.21406 1.20285 1.19291 0.90611 0.83809 1.43683 0.91036 1.44460 1.02042 1.01028 1.87135 1.21410 0.84150 0.91704 0.98891 1.22711 0.85774 0.94669 0.94368 0.85590 1.86877 1.36438 1.88481 1.17092 1.22554 1.00271 0.98251 0.81594 1.21957 0.86888 1.03101 0.92604 1.46654 1.08624 1.69189 1.07311 1.20258 0.82029 0.75816 0.89816 1.90573 1.39978 1.52739 1.61371 1.22438 1.00638 1.04678 0.92342 0.83883 1.23250 0.97546 0.88138 1.04549 1.20077 0.92852 1.03922 0.91359 0.87174 1.20340 0.87392 1.07788 0.95691 1.22322 1.00985 1.06724 0.88430 1.70279 1.04698 1.18880 1.31570 1.25695 0.97403 1.03056 0.83308 1.43256 1.12308 1.49250 1.11624 0.72764 1.21592 0.96469 0.98394 0.81914 0.88799 1.22228 0.96908 0.84091 0.98587 0.94237 0.95777 0.96879 0.95696 0.83549 0.88106 0.87575 0.84381 0.87156 0.80126 0.74035 0.91056 0.96351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.91 10.26 21.65 0.22 -57.68 16 2 C -0.06 -3.45 5.48 84.86 0.47 -2.99 16 3 Si 0.98 47.26 29.55 68.60 2.03 49.29 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.25 -14.54 10.25 84.03 0.86 -13.68 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.62 -33.67 3.39 -695.65 -2.36 -36.02 16 10 C 0.16 8.34 5.02 86.63 0.43 8.77 16 11 C 0.08 3.22 3.82 30.86 0.12 3.34 16 12 H 0.13 4.36 8.14 -2.39 -0.02 4.34 16 13 O -0.37 -12.61 10.24 -146.22 -1.50 -14.11 16 14 C 0.05 1.37 6.72 71.64 0.48 1.85 16 15 C 0.08 1.76 5.91 86.32 0.51 2.27 16 16 N -0.59 -18.19 3.08 -805.48 -2.48 -20.68 16 17 C 0.53 16.44 6.93 87.66 0.61 17.05 16 18 O -0.57 -21.69 13.14 -3.04 -0.04 -21.73 16 19 C -0.18 -3.82 4.74 -11.51 -0.05 -3.87 16 20 H 0.14 2.63 6.13 -2.39 -0.01 2.61 16 21 C -0.10 -1.43 9.75 30.59 0.30 -1.13 16 22 C -0.06 -1.25 5.85 -11.51 -0.07 -1.31 16 23 H 0.11 2.55 7.67 -2.39 -0.02 2.54 16 24 C 0.00 0.08 6.92 40.95 0.28 0.37 16 25 C -0.04 -0.79 10.94 83.52 0.91 0.12 16 26 N -0.53 -12.53 11.25 -200.32 -2.25 -14.78 16 27 C 0.19 3.19 13.04 180.26 2.35 5.55 16 28 N -0.56 -9.24 6.15 -186.49 -1.15 -10.38 16 29 H 0.43 4.82 8.96 -92.71 -0.83 3.99 16 30 C 0.12 4.43 3.45 45.83 0.16 4.59 16 31 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 32 C 0.11 4.93 6.29 86.83 0.55 5.48 16 33 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 34 H 0.02 1.37 5.74 -2.39 -0.01 1.35 16 35 H 0.01 0.75 7.49 -2.39 -0.02 0.73 16 36 H 0.02 0.87 6.81 -2.39 -0.02 0.85 16 37 H 0.15 2.73 8.14 -2.38 -0.02 2.71 16 38 H 0.10 1.96 5.95 -2.38 -0.01 1.95 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.14 1.30 7.95 -2.38 -0.02 1.28 16 41 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.18 3.02 8.06 -2.91 -0.02 2.99 16 43 H 0.24 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.07 3.54 4.81 -9.99 -0.05 3.49 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -82.07 356.12 0.55 -81.52 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.17 Total: 18.17 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 7.91 Total: 26.41 kcal Atomic # 7 Polarization: -131.53 SS G_CDS: -8.02 Total: -139.55 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -1.54 Total: -35.84 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -82.07 0.55 -81.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083110084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.109 kcal (2) G-P(sol) polarization free energy of solvation -82.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds