Wall clock time and date at job start Tue Mar 31 2020 16:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86809 * 119.99916 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99944 * 3 2 1 5 5 H 1.48502 * 109.46784 * 30.00052 * 3 2 1 6 6 H 1.48498 * 109.46938 * 150.00128 * 3 2 1 7 7 C 1.38815 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99704 * 194.48961 * 7 2 1 9 9 N 1.36933 * 119.99542 * 14.49026 * 7 2 1 10 10 C 1.46541 * 119.73349 * 205.19980 * 9 7 2 11 11 C 1.52009 * 108.10829 * 236.30030 * 10 9 7 12 12 C 1.53064 * 109.68678 * 301.56722 * 11 10 9 13 13 H 1.09002 * 114.44320 * 275.15861 * 12 11 10 14 14 C 1.54086 * 111.39457 * 142.51747 * 12 11 10 15 15 N 1.47288 * 87.60464 * 273.97139 * 14 12 11 16 16 C 1.34773 * 136.54653 * 151.34661 * 15 14 12 17 17 O 1.21569 * 120.00479 * 180.02562 * 16 15 14 18 18 C 1.47724 * 119.99642 * 0.02562 * 16 15 14 19 19 C 1.41290 * 125.94992 * 180.02562 * 18 16 15 20 20 C 1.34864 * 107.70797 * 179.97438 * 19 18 16 21 21 N 1.36405 * 107.91838 * 0.09380 * 20 19 18 22 22 N 1.32115 * 125.95296 * 359.96411 * 18 16 15 23 23 C 1.46726 * 123.61988 * 179.85180 * 21 20 19 24 24 C 1.53525 * 107.96004 * 343.05852 * 23 21 20 25 25 C 1.53226 * 109.30932 * 47.27078 * 24 23 21 26 26 O 1.36108 * 128.61780 * 180.25134 * 20 19 18 27 27 C 1.46468 * 86.91196 * 331.60754 * 15 14 12 28 28 H 1.09002 * 111.44153 * 276.13883 * 27 15 14 29 29 C 1.45696 * 119.74190 * 25.18466 * 9 7 2 30 30 H 0.96999 * 119.99759 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.70850 * 356.10591 * 10 9 7 32 32 H 1.08993 * 109.70621 * 116.69040 * 10 9 7 33 33 H 1.08991 * 109.18562 * 181.55686 * 11 10 9 34 34 H 1.08997 * 109.37092 * 61.68566 * 11 10 9 35 35 H 1.09000 * 113.53092 * 159.28990 * 14 12 11 36 36 H 1.08997 * 113.52541 * 28.65435 * 14 12 11 37 37 H 1.07993 * 126.15009 * 359.90239 * 19 18 16 38 38 H 1.09004 * 109.75844 * 223.44248 * 23 21 20 39 39 H 1.08996 * 109.80884 * 102.70356 * 23 21 20 40 40 H 1.09009 * 109.50272 * 287.31651 * 24 23 21 41 41 H 1.09000 * 109.49770 * 167.21998 * 24 23 21 42 42 H 1.08997 * 109.50292 * 55.34165 * 25 24 23 43 43 H 1.09006 * 109.50585 * 175.42551 * 25 24 23 44 44 H 1.08999 * 108.78798 * 19.11318 * 29 9 7 45 45 H 1.09003 * 108.69325 * 260.83653 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0646 -1.2168 0.2346 9 7 1.3583 -2.3693 -0.2957 10 6 1.8760 -3.6411 0.2160 11 6 2.1134 -4.5650 -0.9676 12 6 0.8049 -4.7652 -1.7360 13 1 0.1638 -5.5518 -1.3378 14 6 1.0499 -4.8305 -3.2558 15 7 0.9700 -3.3598 -3.2694 16 6 1.4829 -2.3590 -4.0122 17 8 1.2088 -1.2043 -3.7487 18 6 2.3782 -2.6652 -5.1466 19 6 2.9838 -1.7195 -6.0041 20 6 3.7225 -2.3975 -6.9060 21 7 3.5938 -3.7288 -6.6382 22 7 2.7531 -3.8709 -5.5354 23 6 4.2554 -4.7817 -7.4169 24 6 4.7092 -4.1703 -8.7501 25 6 5.4198 -2.8397 -8.4814 26 8 4.4840 -1.9064 -7.9216 27 6 0.0867 -3.4761 -2.1069 28 1 -0.9441 -3.6648 -2.4070 29 6 0.1551 -2.3367 -1.1167 30 1 -0.4850 0.8401 -0.0004 31 1 2.8129 -3.4699 0.7462 32 1 1.1477 -4.0892 0.8918 33 1 2.4732 -5.5275 -0.6041 34 1 2.8592 -4.1223 -1.6278 35 1 0.2434 -5.3151 -3.8062 36 1 2.0344 -5.2153 -3.5217 37 1 2.8738 -0.6467 -5.9482 38 1 3.5557 -5.5963 -7.6042 39 1 5.1203 -5.1573 -6.8703 40 1 3.8406 -3.9971 -9.3855 41 1 5.3951 -4.8547 -9.2494 42 1 6.2384 -2.9995 -7.7795 43 1 5.8146 -2.4425 -9.4166 44 1 0.1287 -1.3942 -1.6636 45 1 -0.7155 -2.3871 -0.4628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084509138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:04 Heat of formation + Delta-G solvation = 93.371138 kcal Electronic energy + Delta-G solvation = -29737.011822 eV Core-core repulsion = 25759.637105 eV Total energy + Delta-G solvation = -3977.374717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.82881 -40.38604 -38.73476 -37.27450 -35.12960 -34.90985 -32.11504 -31.21831 -30.03009 -29.52578 -28.86738 -26.89738 -26.52025 -24.06769 -23.67124 -23.10445 -21.93095 -20.87624 -20.08894 -19.55656 -18.39661 -17.50386 -16.91642 -16.35902 -16.07718 -15.69767 -15.59327 -15.35373 -15.03182 -14.96242 -14.41752 -14.09178 -13.65747 -13.55199 -13.39406 -13.19305 -12.97928 -12.72228 -12.50871 -12.26067 -11.97561 -11.80721 -11.67110 -11.53520 -11.36005 -11.05235 -10.76121 -10.56963 -10.52622 -10.36895 -10.07301 -9.78001 -9.67795 -9.56453 -9.15398 -8.98275 -8.45832 -8.21151 -8.00814 -6.49505 -5.55633 -2.97452 1.50019 2.03252 2.28901 2.77251 3.40609 3.56202 3.62020 3.65826 3.78594 3.90051 3.98986 4.36822 4.39017 4.68607 4.70500 4.77744 4.80730 4.89239 5.01344 5.22860 5.30791 5.36839 5.38379 5.54956 5.62146 5.67277 5.82354 5.85624 5.91443 5.93288 6.04423 6.20611 6.23304 6.41733 6.49771 6.55257 6.62414 6.69955 6.89111 7.11267 7.12853 7.43096 7.60104 7.87290 8.03930 8.37679 8.67611 8.80598 9.45807 10.10060 10.57524 11.52526 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.004040 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.399029 B = 6928.238239 C = 8192.894203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.012 3.988 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.062 0.938 9 N -0.585 5.585 10 C 0.148 3.852 11 C -0.113 4.113 12 C -0.115 4.115 13 H 0.092 0.908 14 C 0.104 3.896 15 N -0.619 5.619 16 C 0.621 3.379 17 O -0.499 6.499 18 C 0.072 3.928 19 C -0.225 4.225 20 C 0.257 3.743 21 N -0.401 5.401 22 N -0.244 5.244 23 C 0.130 3.870 24 C -0.174 4.174 25 C 0.049 3.951 26 O -0.286 6.286 27 C 0.121 3.879 28 H 0.075 0.925 29 C 0.166 3.834 30 H 0.251 0.749 31 H 0.055 0.945 32 H 0.019 0.981 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.165 0.835 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.104 0.896 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.251 -14.779 -17.644 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.187 4.187 3 Si 0.730 3.270 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.381 4.381 8 H 0.080 0.920 9 N -0.308 5.308 10 C 0.022 3.978 11 C -0.153 4.153 12 C -0.134 4.134 13 H 0.111 0.889 14 C -0.020 4.020 15 N -0.354 5.354 16 C 0.406 3.594 17 O -0.370 6.370 18 C -0.096 4.096 19 C -0.254 4.254 20 C 0.091 3.909 21 N -0.199 5.199 22 N -0.074 5.074 23 C 0.009 3.991 24 C -0.213 4.213 25 C -0.027 4.027 26 O -0.194 6.194 27 C 0.017 3.983 28 H 0.093 0.907 29 C 0.040 3.960 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.183 0.817 38 H 0.120 0.880 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.128 0.872 42 H 0.091 0.909 43 H 0.137 0.863 44 H 0.122 0.878 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.070 -14.834 -17.604 24.394 hybrid contribution 0.676 1.333 -0.593 1.608 sum 8.746 -13.501 -18.197 24.288 Atomic orbital electron populations 1.70005 1.05188 1.25198 1.54522 1.24901 0.95242 0.98048 1.00463 0.86337 0.78843 0.84037 0.77806 1.21173 1.21937 1.20776 1.19100 0.91669 0.84634 1.42721 0.92048 1.43473 1.29863 1.01634 1.55833 1.20528 0.97373 0.87331 0.92612 1.21617 0.95054 0.99266 0.99332 1.22711 0.98726 0.97695 0.94302 0.88946 1.23297 1.01817 0.81017 0.95834 1.49189 1.48628 1.06276 1.31341 1.16160 0.79725 0.84010 0.79513 1.90905 1.59472 1.18718 1.67882 1.22202 0.99451 0.90400 0.97561 1.20260 1.06800 1.01199 0.97190 1.19400 0.96378 0.83691 0.91395 1.49317 1.40098 1.04561 1.25898 1.77636 1.09260 1.20757 0.99760 1.21889 0.97762 0.89323 0.90077 1.22634 1.03130 0.98441 0.97090 1.23090 0.90442 0.88923 1.00206 1.86683 1.49551 1.37138 1.46003 1.22659 0.92651 0.97129 0.85834 0.90743 1.20232 0.88885 0.96288 0.90624 0.93853 0.92666 0.96351 0.92823 0.92085 0.90718 0.90346 0.81713 0.88037 0.89313 0.89277 0.87247 0.90945 0.86341 0.87787 0.95129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 10.94 55.49 0.61 -27.37 16 2 C 0.01 0.36 4.94 -17.43 -0.09 0.27 16 3 Si 0.90 23.90 29.58 -169.99 -5.03 18.87 16 4 H -0.28 -7.78 7.11 56.52 0.40 -7.38 16 5 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.25 -7.41 9.53 -15.06 -0.14 -7.55 16 8 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.59 -15.42 3.02 -175.59 -0.53 -15.95 16 10 C 0.15 3.17 6.44 -4.52 -0.03 3.14 16 11 C -0.11 -2.00 5.61 -27.20 -0.15 -2.15 16 12 C -0.12 -1.86 4.58 -90.45 -0.41 -2.28 16 13 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.10 1.58 7.15 -11.54 -0.08 1.50 16 15 N -0.62 -12.29 3.34 -189.05 -0.63 -12.92 16 16 C 0.62 13.73 8.01 -12.39 -0.10 13.63 16 17 O -0.50 -13.21 16.15 5.31 0.09 -13.13 16 18 C 0.07 1.36 7.08 -82.71 -0.59 0.77 16 19 C -0.22 -3.95 10.58 -39.62 -0.42 -4.37 16 20 C 0.26 3.73 7.57 -16.71 -0.13 3.60 16 21 N -0.40 -5.29 4.08 -60.91 -0.25 -5.54 16 22 N -0.24 -3.97 11.16 33.43 0.37 -3.60 16 23 C 0.13 0.98 7.41 -3.65 -0.03 0.95 16 24 C -0.17 -0.87 6.16 -26.34 -0.16 -1.03 16 25 C 0.05 0.32 7.00 37.27 0.26 0.58 16 26 O -0.29 -3.42 10.66 -20.08 -0.21 -3.64 16 27 C 0.12 2.42 4.03 -77.82 -0.31 2.10 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 C 0.17 4.24 4.59 -5.43 -0.02 4.21 16 30 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.05 1.17 7.87 -51.93 -0.41 0.76 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.16 7.36 -51.93 -0.38 0.78 16 37 H 0.17 2.89 8.06 -52.49 -0.42 2.46 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.50 8.14 -51.92 -0.42 0.07 16 41 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 3.12 4.95 -51.93 -0.26 2.86 16 45 H 0.03 0.83 8.00 -51.93 -0.42 0.42 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -37.36 360.53 -9.04 -46.40 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -6.48 Total: -1.96 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: -2.41 Total: 13.40 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.43 Total: -65.38 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.13 Total: -16.76 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.03 Total: 18.87 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.36 -9.04 -46.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084509138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.774 kcal (2) G-P(sol) polarization free energy of solvation -37.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds