Wall clock time and date at job start Tue Mar 31 2020 16:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86809 * 119.99916 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99944 * 3 2 1 5 5 H 1.48502 * 109.46784 * 30.00052 * 3 2 1 6 6 H 1.48498 * 109.46938 * 150.00128 * 3 2 1 7 7 C 1.38815 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99704 * 194.48961 * 7 2 1 9 9 N 1.36933 * 119.99542 * 14.49026 * 7 2 1 10 10 C 1.46541 * 119.73349 * 205.19980 * 9 7 2 11 11 C 1.52009 * 108.10829 * 236.30030 * 10 9 7 12 12 C 1.53064 * 109.68678 * 301.56722 * 11 10 9 13 13 H 1.09002 * 114.44320 * 275.15861 * 12 11 10 14 14 C 1.54086 * 111.39457 * 142.51747 * 12 11 10 15 15 N 1.47288 * 87.60464 * 273.97139 * 14 12 11 16 16 C 1.34773 * 136.54653 * 151.34661 * 15 14 12 17 17 O 1.21569 * 120.00479 * 180.02562 * 16 15 14 18 18 C 1.47724 * 119.99642 * 0.02562 * 16 15 14 19 19 C 1.41290 * 125.94992 * 180.02562 * 18 16 15 20 20 C 1.34864 * 107.70797 * 179.97438 * 19 18 16 21 21 N 1.36405 * 107.91838 * 0.09380 * 20 19 18 22 22 N 1.32115 * 125.95296 * 359.96411 * 18 16 15 23 23 C 1.46726 * 123.61988 * 179.85180 * 21 20 19 24 24 C 1.53525 * 107.96004 * 343.05852 * 23 21 20 25 25 C 1.53226 * 109.30932 * 47.27078 * 24 23 21 26 26 O 1.36108 * 128.61780 * 180.25134 * 20 19 18 27 27 C 1.46468 * 86.91196 * 331.60754 * 15 14 12 28 28 H 1.09002 * 111.44153 * 276.13883 * 27 15 14 29 29 C 1.45696 * 119.74190 * 25.18466 * 9 7 2 30 30 H 0.96999 * 119.99759 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.70850 * 356.10591 * 10 9 7 32 32 H 1.08993 * 109.70621 * 116.69040 * 10 9 7 33 33 H 1.08991 * 109.18562 * 181.55686 * 11 10 9 34 34 H 1.08997 * 109.37092 * 61.68566 * 11 10 9 35 35 H 1.09000 * 113.53092 * 159.28990 * 14 12 11 36 36 H 1.08997 * 113.52541 * 28.65435 * 14 12 11 37 37 H 1.07993 * 126.15009 * 359.90239 * 19 18 16 38 38 H 1.09004 * 109.75844 * 223.44248 * 23 21 20 39 39 H 1.08996 * 109.80884 * 102.70356 * 23 21 20 40 40 H 1.09009 * 109.50272 * 287.31651 * 24 23 21 41 41 H 1.09000 * 109.49770 * 167.21998 * 24 23 21 42 42 H 1.08997 * 109.50292 * 55.34165 * 25 24 23 43 43 H 1.09006 * 109.50585 * 175.42551 * 25 24 23 44 44 H 1.08999 * 108.78798 * 19.11318 * 29 9 7 45 45 H 1.09003 * 108.69325 * 260.83653 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0646 -1.2168 0.2346 9 7 1.3583 -2.3693 -0.2957 10 6 1.8760 -3.6411 0.2160 11 6 2.1134 -4.5650 -0.9676 12 6 0.8049 -4.7652 -1.7360 13 1 0.1638 -5.5518 -1.3378 14 6 1.0499 -4.8305 -3.2558 15 7 0.9700 -3.3598 -3.2694 16 6 1.4829 -2.3590 -4.0122 17 8 1.2088 -1.2043 -3.7487 18 6 2.3782 -2.6652 -5.1466 19 6 2.9838 -1.7195 -6.0041 20 6 3.7225 -2.3975 -6.9060 21 7 3.5938 -3.7288 -6.6382 22 7 2.7531 -3.8709 -5.5354 23 6 4.2554 -4.7817 -7.4169 24 6 4.7092 -4.1703 -8.7501 25 6 5.4198 -2.8397 -8.4814 26 8 4.4840 -1.9064 -7.9216 27 6 0.0867 -3.4761 -2.1069 28 1 -0.9441 -3.6648 -2.4070 29 6 0.1551 -2.3367 -1.1167 30 1 -0.4850 0.8401 -0.0004 31 1 2.8129 -3.4699 0.7462 32 1 1.1477 -4.0892 0.8918 33 1 2.4732 -5.5275 -0.6041 34 1 2.8592 -4.1223 -1.6278 35 1 0.2434 -5.3151 -3.8062 36 1 2.0344 -5.2153 -3.5217 37 1 2.8738 -0.6467 -5.9482 38 1 3.5557 -5.5963 -7.6042 39 1 5.1203 -5.1573 -6.8703 40 1 3.8406 -3.9971 -9.3855 41 1 5.3951 -4.8547 -9.2494 42 1 6.2384 -2.9995 -7.7795 43 1 5.8146 -2.4425 -9.4166 44 1 0.1287 -1.3942 -1.6636 45 1 -0.7155 -2.3871 -0.4628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084509138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:03 Heat of formation + Delta-G solvation = 64.783665 kcal Electronic energy + Delta-G solvation = -29738.251468 eV Core-core repulsion = 25759.637105 eV Total energy + Delta-G solvation = -3978.614363 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.92487 -41.87843 -39.79732 -38.85823 -37.06109 -35.66605 -34.03110 -32.34764 -31.88002 -30.69343 -30.36129 -28.66080 -27.36771 -25.68589 -25.19663 -24.32441 -23.29048 -22.54351 -21.05519 -20.79885 -19.67288 -19.24055 -18.17237 -17.64825 -17.36422 -17.12670 -16.99825 -16.55868 -16.42628 -15.94808 -15.78450 -15.62351 -15.25359 -15.00119 -14.84317 -14.67245 -14.39479 -14.21974 -14.00044 -13.52601 -13.37643 -13.15719 -12.78785 -12.69602 -12.62970 -12.48833 -12.32680 -12.18532 -12.13615 -11.96577 -11.88373 -11.73987 -11.47543 -11.17563 -10.78827 -10.43014 -10.27580 -9.62819 -9.54981 -8.64807 -7.82508 -5.25834 0.21681 0.99965 1.06241 1.35776 1.45832 1.47351 1.70354 2.17453 2.34876 2.50781 2.97908 3.31661 3.43400 3.47538 3.55769 3.74890 3.83275 3.96028 3.98682 4.12724 4.22625 4.29304 4.39562 4.47401 4.52015 4.54854 4.57148 4.61320 4.67294 4.71561 4.76713 4.86836 4.92013 4.96182 5.04546 5.08269 5.12346 5.26110 5.33874 5.45722 5.58860 5.72689 5.84983 6.16027 6.22133 6.42883 6.84768 7.18887 7.22196 7.99090 8.37347 9.21809 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.004040 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.399029 B = 6928.238239 C = 8192.894203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.043 4.043 3 Si 0.952 3.048 4 H -0.302 1.302 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.258 4.258 8 H 0.058 0.942 9 N -0.604 5.604 10 C 0.141 3.859 11 C -0.103 4.103 12 C -0.098 4.098 13 H 0.140 0.860 14 C 0.117 3.883 15 N -0.625 5.625 16 C 0.610 3.390 17 O -0.567 6.567 18 C 0.047 3.953 19 C -0.266 4.266 20 C 0.277 3.723 21 N -0.384 5.384 22 N -0.238 5.238 23 C 0.112 3.888 24 C -0.163 4.163 25 C 0.032 3.968 26 O -0.300 6.300 27 C 0.107 3.893 28 H 0.097 0.903 29 C 0.179 3.821 30 H 0.244 0.756 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.101 0.899 34 H 0.034 0.966 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.145 0.855 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.155 0.845 42 H 0.081 0.919 43 H 0.150 0.850 44 H 0.052 0.948 45 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.329 -19.231 -19.749 29.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.238 4.238 3 Si 0.781 3.219 4 H -0.230 1.230 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.388 4.388 8 H 0.076 0.924 9 N -0.327 5.327 10 C 0.016 3.984 11 C -0.142 4.142 12 C -0.117 4.117 13 H 0.157 0.843 14 C -0.004 4.004 15 N -0.359 5.359 16 C 0.397 3.603 17 O -0.444 6.444 18 C -0.119 4.119 19 C -0.297 4.297 20 C 0.109 3.891 21 N -0.183 5.183 22 N -0.069 5.069 23 C -0.006 4.006 24 C -0.201 4.201 25 C -0.042 4.042 26 O -0.208 6.208 27 C 0.003 3.997 28 H 0.115 0.885 29 C 0.053 3.947 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.119 0.881 34 H 0.053 0.947 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.163 0.837 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.173 0.827 42 H 0.099 0.901 43 H 0.168 0.832 44 H 0.070 0.930 45 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 10.187 -19.392 -19.711 29.468 hybrid contribution 0.167 2.594 -0.050 2.600 sum 10.354 -16.798 -19.761 27.926 Atomic orbital electron populations 1.70160 1.06326 1.25110 1.56146 1.25579 0.96024 1.00878 1.01321 0.85492 0.78705 0.80908 0.76790 1.23007 1.21290 1.18788 1.19383 0.91736 0.86291 1.41410 0.92431 1.43724 1.29820 1.02577 1.56581 1.20767 0.97131 0.85983 0.94526 1.21501 0.95423 1.00124 0.97185 1.22766 0.97803 0.95973 0.95152 0.84273 1.23493 1.03778 0.77862 0.95288 1.49398 1.47704 1.08312 1.30445 1.16687 0.79815 0.83618 0.80148 1.90853 1.62051 1.21427 1.70023 1.21680 1.00756 0.91809 0.97699 1.20210 1.09305 1.00771 0.99371 1.19125 0.95213 0.83971 0.90784 1.49768 1.38489 1.05385 1.24676 1.77474 1.09568 1.19116 1.00758 1.22585 0.98603 0.88561 0.90829 1.22680 1.03717 0.98058 0.95620 1.23643 0.89679 0.89375 1.01458 1.86707 1.49965 1.39252 1.44833 1.22750 0.94801 0.96958 0.85150 0.88489 1.19839 0.87665 0.96555 0.90688 0.94645 0.93125 0.95056 0.88076 0.94701 0.87095 0.89331 0.83703 0.86087 0.87135 0.89645 0.82682 0.90088 0.83203 0.93004 0.98054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.14 10.94 21.65 0.24 -60.91 16 2 C -0.04 -2.69 4.94 84.86 0.42 -2.27 16 3 Si 0.95 51.62 29.58 68.60 2.03 53.65 16 4 H -0.30 -17.10 7.11 99.48 0.71 -16.40 16 5 H -0.29 -15.11 7.11 99.48 0.71 -14.41 16 6 H -0.26 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.26 -15.84 9.53 84.03 0.80 -15.03 16 8 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 9 N -0.60 -32.85 3.02 -709.43 -2.14 -34.99 16 10 C 0.14 5.92 6.44 86.04 0.55 6.47 16 11 C -0.10 -3.36 5.61 30.29 0.17 -3.19 16 12 C -0.10 -2.83 4.58 -10.68 -0.05 -2.88 16 13 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 14 C 0.12 3.16 7.15 81.09 0.58 3.74 16 15 N -0.62 -24.91 3.34 -870.29 -2.90 -27.82 16 16 C 0.61 28.58 8.01 86.75 0.69 29.28 16 17 O -0.57 -32.94 16.15 -3.93 -0.06 -33.00 16 18 C 0.05 1.83 7.08 42.36 0.30 2.13 16 19 C -0.27 -9.95 10.58 22.24 0.24 -9.72 16 20 C 0.28 7.92 7.57 83.21 0.63 8.55 16 21 N -0.38 -9.30 4.08 -457.04 -1.86 -11.17 16 22 N -0.24 -7.44 11.16 -48.15 -0.54 -7.98 16 23 C 0.11 1.20 7.41 86.51 0.64 1.84 16 24 C -0.16 -0.83 6.16 30.85 0.19 -0.64 16 25 C 0.03 0.31 7.00 72.06 0.50 0.81 16 26 O -0.30 -6.76 10.66 -94.77 -1.01 -7.77 16 27 C 0.11 4.26 4.03 38.60 0.16 4.42 16 28 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 29 C 0.18 9.59 4.59 85.91 0.39 9.99 16 30 H 0.24 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.05 2.13 7.87 -2.39 -0.02 2.11 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.03 1.32 7.68 -2.39 -0.02 1.30 16 35 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.09 2.28 7.36 -2.39 -0.02 2.26 16 37 H 0.15 5.75 8.06 -2.91 -0.02 5.73 16 38 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 41 H 0.16 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.15 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.05 3.34 4.95 -2.39 -0.01 3.33 16 45 H 0.00 0.10 8.00 -2.39 -0.02 0.08 16 Total: -1.00 -92.64 360.53 0.97 -91.68 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.00 Total: 4.79 kcal Atomic # 6 Polarization: 27.28 SS G_CDS: 6.22 Total: 33.50 kcal Atomic # 7 Polarization: -135.65 SS G_CDS: -7.21 Total: -142.86 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.07 Total: -40.76 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.03 Total: 53.65 kcal Total: -92.64 0.97 -91.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084509138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.462 kcal (2) G-P(sol) polarization free energy of solvation -92.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds