Wall clock time and date at job start Tue Mar 31 2020 16:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35508 * 117.00053 * 2 1 4 4 C 1.39637 * 120.49015 * 179.97438 * 3 2 1 5 5 C 1.39146 * 118.20605 * 179.97438 * 4 3 2 6 6 C 1.48452 * 120.52122 * 180.02562 * 5 4 3 7 7 O 1.21485 * 119.99482 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00150 * 180.02562 * 6 5 4 9 9 C 1.47211 * 126.70550 * 0.02562 * 8 6 5 10 10 C 1.53779 * 106.38023 * 211.23933 * 9 8 6 11 11 H 1.09001 * 111.85820 * 103.08589 * 10 9 8 12 12 C 1.53788 * 109.34324 * 228.51913 * 10 9 8 13 13 N 1.46513 * 106.73107 * 95.36128 * 12 10 9 14 14 C 1.36926 * 126.32345 * 210.70053 * 13 12 10 15 15 H 1.08006 * 120.00428 * 163.48338 * 14 13 12 16 16 C 1.38810 * 120.00178 * 343.48862 * 14 13 12 17 17 N 1.31625 * 119.99909 * 351.69871 * 16 14 13 18 18 Si 1.86797 * 120.00494 * 171.69945 * 16 14 13 19 19 H 1.48500 * 109.47170 * 94.97753 * 18 16 14 20 20 H 1.48498 * 109.47336 * 214.98101 * 18 16 14 21 21 H 1.48498 * 109.47151 * 334.98059 * 18 16 14 22 22 C 1.47220 * 106.96957 * 29.90120 * 13 12 10 23 23 C 1.53782 * 106.37341 * 329.55086 * 22 13 12 24 24 C 1.53004 * 111.85508 * 140.61594 * 23 22 13 25 25 C 1.47222 * 126.70094 * 179.71227 * 8 6 5 26 26 N 1.33282 * 118.96487 * 0.02562 * 5 4 3 27 27 C 1.31526 * 120.88513 * 359.97438 * 26 5 4 28 28 N 1.31895 * 121.98878 * 359.74686 * 27 26 5 29 29 H 1.09003 * 109.47307 * 59.99729 * 1 2 3 30 30 H 1.08998 * 109.47098 * 300.00091 * 1 2 3 31 31 H 1.08999 * 109.47257 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.89962 * 359.95691 * 4 3 2 33 33 H 1.09003 * 110.07421 * 330.47363 * 9 8 6 34 34 H 1.09002 * 110.07353 * 92.00921 * 9 8 6 35 35 H 1.09005 * 110.06734 * 213.18509 * 12 10 9 36 36 H 1.08996 * 110.07377 * 334.72797 * 12 10 9 37 37 H 0.96994 * 119.99895 * 180.02562 * 17 16 14 38 38 H 1.08999 * 110.07198 * 210.32745 * 22 13 12 39 39 H 1.08994 * 110.12564 * 88.80962 * 22 13 12 40 40 H 1.09003 * 109.47066 * 302.06244 * 24 23 22 41 41 H 1.09001 * 109.47225 * 62.05826 * 24 23 22 42 42 H 1.08996 * 109.47378 * 182.06584 * 24 23 22 43 43 H 1.09000 * 110.07370 * 267.98896 * 25 8 6 44 44 H 1.09000 * 110.07273 * 29.53586 * 25 8 6 45 45 H 1.07999 * 119.00558 * 180.02562 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4380 1.2924 0.0005 5 6 4.0198 2.5564 0.0000 6 6 5.4967 2.7065 -0.0001 7 8 6.2073 1.7212 -0.0001 8 7 6.0491 3.9358 -0.0001 9 6 5.3332 5.2221 0.0004 10 6 6.2242 6.2146 -0.7650 11 1 5.8574 6.3933 -1.7757 12 6 6.3615 7.5104 0.0518 13 7 7.6040 7.3953 0.8197 14 6 7.8541 7.9513 2.0458 15 1 8.6827 7.5964 2.6408 16 6 7.0427 8.9709 2.5242 17 7 6.1378 9.5153 1.7385 18 14 7.2350 9.5704 4.2828 19 1 8.1323 10.7534 4.3072 20 1 5.9050 9.9467 4.8257 21 1 7.8205 8.4878 5.1137 22 6 8.5200 6.5546 0.0314 23 6 7.6366 5.5799 -0.7651 24 6 8.1656 5.3615 -2.1841 25 6 7.4864 4.2546 0.0058 26 7 3.2304 3.6303 -0.0005 27 6 1.9211 3.5057 -0.0010 28 7 1.3314 2.3259 -0.0060 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0480 0.4011 0.0017 33 1 4.3726 5.1159 -0.5037 34 1 5.1831 5.5663 1.0237 35 1 6.4416 8.3674 -0.6170 36 1 5.5024 7.6294 0.7120 37 1 5.5710 10.2280 2.0727 38 1 9.1839 6.0007 0.6951 39 1 9.1037 7.1730 -0.6503 40 1 8.2223 6.3189 -2.7021 41 1 9.1587 4.9146 -2.1370 42 1 7.4927 4.6956 -2.7243 43 1 7.8392 4.3728 1.0303 44 1 8.0468 3.4649 -0.4947 45 1 1.3103 4.3964 -0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091677969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:07 Heat of formation + Delta-G solvation = 4.396790 kcal Electronic energy + Delta-G solvation = -29090.570410 eV Core-core repulsion = 25109.337475 eV Total energy + Delta-G solvation = -3981.232934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.58631 -41.49472 -39.98331 -39.34864 -36.65524 -34.88669 -34.18409 -32.99993 -32.54494 -31.60510 -28.90848 -28.02148 -27.64787 -26.77039 -25.50926 -25.41129 -23.98331 -21.89610 -21.57729 -20.22947 -19.48522 -19.21285 -18.58190 -17.51924 -17.33128 -17.00464 -16.97776 -16.64418 -16.57841 -15.97029 -15.85390 -15.59445 -15.27720 -15.24662 -14.80672 -14.63939 -14.29923 -13.82337 -13.64404 -13.36199 -13.17057 -13.02259 -12.97650 -12.74073 -12.72439 -12.49504 -12.39278 -12.05266 -11.88389 -11.84156 -11.68554 -11.56478 -11.50121 -11.36982 -11.30727 -10.66170 -10.38873 -10.37083 -9.76869 -8.78074 -7.86588 -5.21426 -0.73471 -0.16050 1.45063 1.47839 1.48402 1.52515 1.57538 1.94470 2.51136 2.63560 2.70827 2.93015 3.29958 3.37009 3.55112 3.66091 3.74061 3.76018 3.95759 4.03033 4.29428 4.34169 4.39725 4.39793 4.43461 4.44489 4.59412 4.69657 4.71124 4.83713 4.86430 4.89226 4.98546 5.06233 5.18125 5.19575 5.26490 5.33430 5.47450 5.49927 5.54577 5.62414 5.78470 5.91781 6.26738 6.33988 6.68354 6.88606 7.12847 7.79142 8.50475 9.26348 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.003333 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.228522 B = 8398.434848 C = 9510.679414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.305 6.305 3 C 0.366 3.634 4 C -0.189 4.189 5 C 0.155 3.845 6 C 0.580 3.420 7 O -0.559 6.559 8 N -0.585 5.585 9 C 0.119 3.881 10 C -0.111 4.111 11 H 0.104 0.896 12 C 0.189 3.811 13 N -0.615 5.615 14 C -0.240 4.240 15 H 0.073 0.927 16 C -0.055 4.055 17 N -0.940 5.940 18 Si 0.970 3.030 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.273 1.273 22 C 0.142 3.858 23 C -0.076 4.076 24 C -0.118 4.118 25 C 0.124 3.876 26 N -0.525 5.525 27 C 0.339 3.661 28 N -0.562 5.562 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.166 0.834 33 H 0.125 0.875 34 H 0.046 0.954 35 H -0.005 1.005 36 H 0.045 0.955 37 H 0.249 0.751 38 H 0.045 0.955 39 H 0.026 0.974 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.489 -16.057 -7.815 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.208 6.208 3 C 0.177 3.823 4 C -0.213 4.213 5 C 0.012 3.988 6 C 0.367 3.633 7 O -0.438 6.438 8 N -0.315 5.315 9 C -0.004 4.004 10 C -0.131 4.131 11 H 0.123 0.877 12 C 0.062 3.938 13 N -0.339 5.339 14 C -0.370 4.370 15 H 0.091 0.909 16 C -0.249 4.249 17 N -0.588 5.588 18 Si 0.799 3.201 19 H -0.214 1.214 20 H -0.219 1.219 21 H -0.198 1.198 22 C 0.016 3.984 23 C -0.078 4.078 24 C -0.175 4.175 25 C 0.002 3.998 26 N -0.246 5.246 27 C 0.052 3.948 28 N -0.293 5.293 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.184 0.816 33 H 0.142 0.858 34 H 0.065 0.935 35 H 0.013 0.987 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -10.643 -16.033 -7.665 20.714 hybrid contribution 0.369 0.232 1.224 1.300 sum -10.274 -15.801 -6.440 19.917 Atomic orbital electron populations 1.23300 0.74329 1.05570 1.03155 1.86265 1.25546 1.22871 1.86132 1.20081 0.88965 0.85881 0.87411 1.21868 0.93396 0.99971 1.06109 1.21101 0.93806 0.89543 0.94384 1.17566 0.86206 0.81991 0.77528 1.90761 1.62407 1.37894 1.52690 1.48436 1.08842 1.05636 1.68551 1.22559 0.97349 0.80093 1.00351 1.23041 0.94501 0.95745 0.99808 0.87740 1.20785 0.89616 0.91507 0.91849 1.44500 1.12038 1.58603 1.18760 1.19272 1.12786 1.12358 0.92546 0.90910 1.25593 0.99691 0.97708 1.01916 1.70104 1.25168 1.27866 1.35637 0.85202 0.76607 0.78086 0.80236 1.21404 1.21874 1.19840 1.21511 0.92300 0.91566 0.93038 1.22132 0.95703 0.93312 0.96687 1.21631 1.01320 1.02200 0.92351 1.22204 0.80774 0.96729 1.00072 1.68608 1.07337 1.31978 1.16668 1.25546 0.87716 0.94816 0.86708 1.68173 1.41701 0.99311 1.20160 0.91432 0.91682 0.85261 0.81602 0.85788 0.93546 0.98696 0.93645 0.94186 0.93649 0.95627 0.91759 0.91036 0.91883 0.92499 0.89371 0.74248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.41 113.37 1.18 1.52 16 2 O -0.30 -5.69 10.49 -88.10 -0.92 -6.61 16 3 C 0.37 7.98 7.53 84.91 0.64 8.62 16 4 C -0.19 -4.64 9.68 22.83 0.22 -4.42 16 5 C 0.16 4.33 6.75 41.87 0.28 4.61 16 6 C 0.58 18.97 7.88 86.97 0.69 19.66 16 7 O -0.56 -20.37 16.65 -3.67 -0.06 -20.43 16 8 N -0.59 -19.30 3.32 -817.30 -2.71 -22.01 16 9 C 0.12 3.97 5.77 86.51 0.50 4.46 16 10 C -0.11 -3.83 3.69 -9.64 -0.04 -3.87 16 11 H 0.10 3.15 7.88 -2.39 -0.02 3.14 16 12 C 0.19 8.73 4.84 86.64 0.42 9.15 16 13 N -0.61 -30.46 3.37 -697.10 -2.35 -32.81 16 14 C -0.24 -13.20 10.27 84.03 0.86 -12.34 16 15 H 0.07 3.90 7.84 -2.91 -0.02 3.87 16 16 C -0.05 -3.04 5.38 84.86 0.46 -2.59 16 17 N -0.94 -54.72 10.92 21.65 0.24 -54.48 16 18 Si 0.97 45.12 29.56 68.60 2.03 47.14 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 22 C 0.14 5.60 6.25 86.51 0.54 6.14 16 23 C -0.08 -2.46 1.09 -50.93 -0.06 -2.52 16 24 C -0.12 -2.94 8.45 71.98 0.61 -2.33 16 25 C 0.12 4.07 6.15 86.60 0.53 4.60 16 26 N -0.52 -13.30 6.77 -189.35 -1.28 -14.58 16 27 C 0.34 6.68 12.27 180.93 2.22 8.90 16 28 N -0.56 -11.43 9.36 -313.01 -2.93 -14.36 16 29 H 0.07 0.73 8.12 -2.39 -0.02 0.71 16 30 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 31 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.17 3.92 7.73 -2.91 -0.02 3.90 16 33 H 0.12 3.69 5.48 -2.39 -0.01 3.68 16 34 H 0.05 1.85 7.39 -2.39 -0.02 1.83 16 35 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 36 H 0.05 2.36 6.29 -2.39 -0.02 2.35 16 37 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 38 H 0.05 1.75 7.56 -2.39 -0.02 1.74 16 39 H 0.03 1.02 7.87 -2.39 -0.02 1.00 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 2.08 7.47 -2.39 -0.02 2.06 16 44 H 0.09 2.66 7.61 -2.39 -0.02 2.64 16 45 H 0.24 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -68.78 364.63 2.07 -66.71 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.01 Total: 11.83 kcal Atomic # 6 Polarization: 30.55 SS G_CDS: 9.06 Total: 39.61 kcal Atomic # 7 Polarization: -129.21 SS G_CDS: -9.04 Total: -138.24 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.99 Total: -27.04 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -68.78 2.07 -66.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091677969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.106 kcal (2) G-P(sol) polarization free energy of solvation -68.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds