Wall clock time and date at job start Tue Mar 31 2020 16:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35468 * 116.99591 * 2 1 4 4 N 1.32422 * 119.11879 * 359.97438 * 3 2 1 5 5 C 1.32129 * 120.97642 * 180.02562 * 4 3 2 6 6 C 1.38798 * 119.22233 * 359.97438 * 5 4 3 7 7 C 1.39457 * 118.38647 * 0.02562 * 6 5 4 8 8 C 1.48469 * 120.51669 * 179.97438 * 7 6 5 9 9 O 1.21474 * 119.99486 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00228 * 179.97438 * 8 7 6 11 11 C 1.47218 * 126.70365 * 359.97438 * 10 8 7 12 12 C 1.53780 * 106.37976 * 148.74066 * 11 10 8 13 13 H 1.09000 * 112.60166 * 141.04452 * 12 11 10 14 14 C 1.55964 * 109.51149 * 267.18411 * 12 11 10 15 15 N 1.47220 * 106.44809 * 131.69606 * 14 12 11 16 16 C 1.36935 * 126.70474 * 148.29311 * 15 14 12 17 17 H 1.07999 * 120.00270 * 179.97438 * 16 15 14 18 18 C 1.38816 * 119.99713 * 359.95924 * 16 15 14 19 19 N 1.31616 * 120.00294 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99864 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47004 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47223 * 119.99641 * 20 18 16 23 23 H 1.48493 * 109.47369 * 239.99854 * 20 18 16 24 24 C 1.47213 * 106.59200 * 328.25975 * 15 14 12 25 25 C 1.53779 * 106.38010 * 31.26866 * 24 15 14 26 26 C 1.53003 * 111.85978 * 104.05646 * 25 24 15 27 27 C 1.47216 * 126.70299 * 180.02562 * 10 8 7 28 28 N 1.32091 * 119.11460 * 180.27861 * 3 2 1 29 29 H 1.09010 * 109.46743 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47502 * 299.99920 * 1 2 3 31 31 H 1.08998 * 109.47404 * 60.00681 * 1 2 3 32 32 H 1.08005 * 120.38878 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.80156 * 179.97438 * 6 5 4 34 34 H 1.09003 * 110.07592 * 29.50530 * 11 10 8 35 35 H 1.09009 * 110.12051 * 267.99550 * 11 10 8 36 36 H 1.08998 * 110.43295 * 12.23104 * 14 12 11 37 37 H 1.09001 * 109.69426 * 250.75963 * 14 12 11 38 38 H 0.96999 * 120.00264 * 180.02562 * 19 18 16 39 39 H 1.09008 * 110.07411 * 272.03615 * 24 15 14 40 40 H 1.08998 * 110.12013 * 150.52803 * 24 15 14 41 41 H 1.08996 * 109.47083 * 182.04982 * 26 25 24 42 42 H 1.09007 * 109.46682 * 302.04177 * 26 25 24 43 43 H 1.08995 * 109.47206 * 62.03621 * 26 25 24 44 44 H 1.09000 * 110.07143 * 92.02336 * 27 10 8 45 45 H 1.08995 * 110.07570 * 330.48348 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3057 2.3064 -0.0005 5 6 1.8670 3.5025 -0.0010 6 6 3.2514 3.6014 -0.0005 7 6 4.0001 2.4248 0.0000 8 6 5.4839 2.4754 0.0000 9 8 6.0550 3.5476 0.0000 10 7 6.1972 1.3320 0.0011 11 6 5.6615 -0.0392 0.0028 12 6 6.6782 -0.9030 -0.7622 13 1 6.8122 -1.8877 -0.3143 14 6 6.2710 -0.9779 -2.2659 15 7 7.4868 -0.6834 -3.0421 16 6 7.8120 -1.1835 -4.2747 17 1 8.7378 -0.8924 -4.7485 18 6 6.9517 -2.0648 -4.9152 19 7 5.8238 -2.4202 -4.3375 20 14 7.3950 -2.7464 -6.5969 21 1 8.7064 -2.1960 -7.0241 22 1 7.4803 -4.2271 -6.5242 23 1 6.3511 -2.3584 -7.5792 24 6 8.2842 0.2543 -2.2346 25 6 7.9920 -0.0835 -0.7631 26 6 9.1459 -0.8512 -0.1149 27 6 7.6644 1.2102 0.0018 28 7 3.3640 1.2559 -0.0056 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.2556 4.3929 -0.0010 33 1 3.7370 4.5661 -0.0013 34 1 4.6952 -0.0641 -0.5011 35 1 5.5587 -0.4004 1.0262 36 1 5.4980 -0.2422 -2.4879 37 1 5.9115 -1.9800 -2.4996 38 1 5.2228 -3.0363 -4.7849 39 1 7.9857 1.2805 -2.4494 40 1 9.3454 0.1219 -2.4454 41 1 8.8836 -1.1017 0.9129 42 1 9.3331 -1.7672 -0.6755 43 1 10.0429 -0.2321 -0.1207 44 1 8.0337 1.1438 1.0251 45 1 8.1111 2.0667 -0.5030 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091843147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:12 Heat of formation + Delta-G solvation = 37.191967 kcal Electronic energy + Delta-G solvation = -29602.690196 eV Core-core repulsion = 25622.879367 eV Total energy + Delta-G solvation = -3979.810829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54045 -40.11166 -38.66446 -37.92598 -35.04520 -34.14780 -32.68812 -31.63594 -30.71830 -29.94944 -27.80947 -26.94595 -26.00765 -25.02509 -24.89835 -23.76656 -22.39444 -20.35892 -20.17598 -18.82954 -18.31200 -18.00133 -16.82765 -16.60640 -16.51727 -15.81931 -15.65247 -15.30418 -14.80514 -14.67453 -14.29291 -14.11475 -13.93193 -13.69470 -13.37992 -13.27641 -12.71120 -12.52023 -12.23390 -12.01176 -11.72604 -11.62486 -11.53709 -11.44433 -11.16671 -11.00768 -10.90902 -10.87608 -10.76922 -10.40016 -10.08901 -9.96224 -9.90841 -9.70987 -9.37863 -9.24471 -9.16671 -8.69454 -8.38854 -6.84671 -5.61326 -3.06879 0.37288 0.82194 2.32993 2.74807 2.98463 3.40065 3.45593 3.48018 3.69538 3.75621 4.23463 4.40218 4.49067 4.73994 4.94654 5.02984 5.04766 5.05665 5.10062 5.27096 5.39618 5.41933 5.52624 5.66712 5.69587 5.72244 5.79692 5.90428 5.96101 6.04670 6.12412 6.30821 6.35743 6.42483 6.47175 6.57488 6.62258 6.74147 6.84049 6.92971 6.99961 7.51714 7.62140 7.66209 7.77037 7.87801 8.13642 8.43358 9.23369 9.84001 10.52408 11.39077 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010931 B = 0.004238 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.875336 B = 6605.959080 C = 8072.851744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.283 6.283 3 C 0.499 3.501 4 N -0.558 5.558 5 C 0.188 3.812 6 C -0.214 4.214 7 C 0.183 3.817 8 C 0.584 3.416 9 O -0.533 6.533 10 N -0.581 5.581 11 C 0.101 3.899 12 C -0.120 4.120 13 H 0.088 0.912 14 C 0.148 3.852 15 N -0.596 5.596 16 C -0.217 4.217 17 H 0.079 0.921 18 C -0.012 4.012 19 N -0.920 5.920 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.145 3.855 25 C -0.089 4.089 26 C -0.121 4.121 27 C 0.117 3.883 28 N -0.490 5.490 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.180 0.820 33 H 0.163 0.837 34 H 0.118 0.882 35 H 0.059 0.941 36 H 0.008 0.992 37 H 0.122 0.878 38 H 0.252 0.748 39 H 0.017 0.983 40 H 0.043 0.957 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.831 7.709 13.222 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.184 6.184 3 C 0.197 3.803 4 N -0.288 5.288 5 C 0.022 3.978 6 C -0.237 4.237 7 C 0.034 3.966 8 C 0.370 3.630 9 O -0.410 6.410 10 N -0.310 5.310 11 C -0.021 4.021 12 C -0.140 4.140 13 H 0.106 0.894 14 C 0.022 3.978 15 N -0.319 5.319 16 C -0.345 4.345 17 H 0.096 0.904 18 C -0.207 4.207 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.018 3.982 25 C -0.091 4.091 26 C -0.179 4.179 27 C -0.005 4.005 28 N -0.218 5.218 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.197 0.803 33 H 0.181 0.819 34 H 0.136 0.864 35 H 0.077 0.923 36 H 0.026 0.974 37 H 0.139 0.861 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.023 6.963 13.004 16.791 hybrid contribution 0.260 0.568 -0.883 1.081 sum -7.763 7.530 12.121 16.245 Atomic orbital electron populations 1.23020 0.75588 1.03789 1.02681 1.86165 1.23381 1.22098 1.86716 1.20735 0.85885 0.84950 0.88767 1.67992 1.41672 0.99430 1.19738 1.23039 0.92128 0.94471 0.88197 1.22750 0.95547 1.00931 1.04518 1.21446 0.94843 0.88081 0.92188 1.17243 0.84368 0.83272 0.78147 1.90779 1.70154 1.28388 1.51707 1.48293 1.07861 1.06427 1.68466 1.22668 1.00212 0.79035 1.00212 1.23536 0.92661 0.97211 1.00609 0.89361 1.22323 0.87906 1.04052 0.83498 1.44512 1.19671 1.50185 1.17525 1.19142 1.03406 1.20235 0.91756 0.90360 1.24771 0.96671 1.00282 0.99021 1.69628 1.11539 1.38224 1.37492 0.85992 0.77455 0.78563 0.83479 1.20547 1.21729 1.21828 1.21430 0.95497 0.93183 0.88063 1.22201 0.96180 0.93708 0.97028 1.21630 0.96490 1.00291 0.99493 1.22216 0.79419 0.98871 0.99993 1.67832 1.07706 1.28547 1.17689 0.87663 0.91992 0.91797 0.80277 0.81896 0.86450 0.92270 0.97445 0.86083 0.93731 0.96577 0.93885 0.93106 0.91591 0.92955 0.91533 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.36 101.05 1.05 1.46 16 2 O -0.28 -3.95 10.56 -18.10 -0.19 -4.14 16 3 C 0.50 7.33 8.48 -91.36 -0.77 6.56 16 4 N -0.56 -6.90 9.20 -14.74 -0.14 -7.03 16 5 C 0.19 1.88 11.30 -17.22 -0.19 1.68 16 6 C -0.21 -2.55 9.71 -38.92 -0.38 -2.93 16 7 C 0.18 2.82 6.76 -82.65 -0.56 2.26 16 8 C 0.58 10.17 7.89 -12.05 -0.09 10.07 16 9 O -0.53 -10.02 16.65 5.39 0.09 -9.93 16 10 N -0.58 -10.04 3.32 -172.43 -0.57 -10.62 16 11 C 0.10 1.74 5.66 -3.24 -0.02 1.72 16 12 C -0.12 -2.27 3.80 -87.65 -0.33 -2.60 16 13 H 0.09 1.59 7.88 -51.93 -0.41 1.18 16 14 C 0.15 3.61 5.75 -2.06 -0.01 3.60 16 15 N -0.60 -15.38 3.39 -169.74 -0.58 -15.95 16 16 C -0.22 -6.07 10.34 -15.06 -0.16 -6.23 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 19 N -0.92 -26.82 10.08 55.49 0.56 -26.26 16 20 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.15 3.10 6.37 -3.25 -0.02 3.08 16 25 C -0.09 -1.56 1.08 -152.70 -0.16 -1.72 16 26 C -0.12 -1.79 8.43 37.16 0.31 -1.47 16 27 C 0.12 1.90 5.97 -3.22 -0.02 1.88 16 28 N -0.49 -7.91 6.80 -11.29 -0.08 -7.98 16 29 H 0.11 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 31 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.16 1.67 7.73 -52.48 -0.41 1.26 16 34 H 0.12 2.22 4.91 -51.93 -0.26 1.96 16 35 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 36 H 0.01 0.20 7.50 -51.93 -0.39 -0.19 16 37 H 0.12 3.33 5.44 -51.93 -0.28 3.05 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.02 0.37 7.38 -51.92 -0.38 -0.01 16 40 H 0.04 0.88 7.82 -51.93 -0.41 0.48 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 45 H 0.08 1.35 7.26 -51.93 -0.38 0.98 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -33.38 363.14 -8.15 -41.54 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.24 Total: 0.84 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: -1.46 Total: 16.92 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -0.80 Total: -67.85 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.10 Total: -14.06 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.38 -8.15 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091843147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.727 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds