Wall clock time and date at job start Tue Mar 31 2020 16:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35468 * 116.99591 * 2 1 4 4 N 1.32422 * 119.11879 * 359.97438 * 3 2 1 5 5 C 1.32129 * 120.97642 * 180.02562 * 4 3 2 6 6 C 1.38798 * 119.22233 * 359.97438 * 5 4 3 7 7 C 1.39457 * 118.38647 * 0.02562 * 6 5 4 8 8 C 1.48469 * 120.51669 * 179.97438 * 7 6 5 9 9 O 1.21474 * 119.99486 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00228 * 179.97438 * 8 7 6 11 11 C 1.47218 * 126.70365 * 359.97438 * 10 8 7 12 12 C 1.53780 * 106.37976 * 148.74066 * 11 10 8 13 13 H 1.09000 * 112.60166 * 141.04452 * 12 11 10 14 14 C 1.55964 * 109.51149 * 267.18411 * 12 11 10 15 15 N 1.47220 * 106.44809 * 131.69606 * 14 12 11 16 16 C 1.36935 * 126.70474 * 148.29311 * 15 14 12 17 17 H 1.07999 * 120.00270 * 179.97438 * 16 15 14 18 18 C 1.38816 * 119.99713 * 359.95924 * 16 15 14 19 19 N 1.31616 * 120.00294 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99864 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47004 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47223 * 119.99641 * 20 18 16 23 23 H 1.48493 * 109.47369 * 239.99854 * 20 18 16 24 24 C 1.47213 * 106.59200 * 328.25975 * 15 14 12 25 25 C 1.53779 * 106.38010 * 31.26866 * 24 15 14 26 26 C 1.53003 * 111.85978 * 104.05646 * 25 24 15 27 27 C 1.47216 * 126.70299 * 180.02562 * 10 8 7 28 28 N 1.32091 * 119.11460 * 180.27861 * 3 2 1 29 29 H 1.09010 * 109.46743 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47502 * 299.99920 * 1 2 3 31 31 H 1.08998 * 109.47404 * 60.00681 * 1 2 3 32 32 H 1.08005 * 120.38878 * 180.02562 * 5 4 3 33 33 H 1.08006 * 120.80156 * 179.97438 * 6 5 4 34 34 H 1.09003 * 110.07592 * 29.50530 * 11 10 8 35 35 H 1.09009 * 110.12051 * 267.99550 * 11 10 8 36 36 H 1.08998 * 110.43295 * 12.23104 * 14 12 11 37 37 H 1.09001 * 109.69426 * 250.75963 * 14 12 11 38 38 H 0.96999 * 120.00264 * 180.02562 * 19 18 16 39 39 H 1.09008 * 110.07411 * 272.03615 * 24 15 14 40 40 H 1.08998 * 110.12013 * 150.52803 * 24 15 14 41 41 H 1.08996 * 109.47083 * 182.04982 * 26 25 24 42 42 H 1.09007 * 109.46682 * 302.04177 * 26 25 24 43 43 H 1.08995 * 109.47206 * 62.03621 * 26 25 24 44 44 H 1.09000 * 110.07143 * 92.02336 * 27 10 8 45 45 H 1.08995 * 110.07570 * 330.48348 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 7 1.3057 2.3064 -0.0005 5 6 1.8670 3.5025 -0.0010 6 6 3.2514 3.6014 -0.0005 7 6 4.0001 2.4248 0.0000 8 6 5.4839 2.4754 0.0000 9 8 6.0550 3.5476 0.0000 10 7 6.1972 1.3320 0.0011 11 6 5.6615 -0.0392 0.0028 12 6 6.6782 -0.9030 -0.7622 13 1 6.8122 -1.8877 -0.3143 14 6 6.2710 -0.9779 -2.2659 15 7 7.4868 -0.6834 -3.0421 16 6 7.8120 -1.1835 -4.2747 17 1 8.7378 -0.8924 -4.7485 18 6 6.9517 -2.0648 -4.9152 19 7 5.8238 -2.4202 -4.3375 20 14 7.3950 -2.7464 -6.5969 21 1 8.7064 -2.1960 -7.0241 22 1 7.4803 -4.2271 -6.5242 23 1 6.3511 -2.3584 -7.5792 24 6 8.2842 0.2543 -2.2346 25 6 7.9920 -0.0835 -0.7631 26 6 9.1459 -0.8512 -0.1149 27 6 7.6644 1.2102 0.0018 28 7 3.3640 1.2559 -0.0056 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.2556 4.3929 -0.0010 33 1 3.7370 4.5661 -0.0013 34 1 4.6952 -0.0641 -0.5011 35 1 5.5587 -0.4004 1.0262 36 1 5.4980 -0.2422 -2.4879 37 1 5.9115 -1.9800 -2.4996 38 1 5.2228 -3.0363 -4.7849 39 1 7.9857 1.2805 -2.4494 40 1 9.3454 0.1219 -2.4454 41 1 8.8836 -1.1017 0.9129 42 1 9.3331 -1.7672 -0.6755 43 1 10.0429 -0.2321 -0.1207 44 1 8.0337 1.1438 1.0251 45 1 8.1111 2.0667 -0.5030 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091843147.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:11 Heat of formation + Delta-G solvation = 13.041273 kcal Electronic energy + Delta-G solvation = -29603.737449 eV Core-core repulsion = 25622.879367 eV Total energy + Delta-G solvation = -3980.858081 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.58643 -41.47917 -39.92154 -39.09071 -36.71787 -35.30756 -34.31825 -32.65800 -32.44909 -31.63002 -28.70135 -28.06517 -27.83853 -26.68200 -26.07628 -24.83427 -23.99274 -22.00696 -21.51735 -20.27371 -19.38241 -19.19216 -18.75622 -17.71764 -17.61605 -17.03989 -16.94090 -16.75133 -16.45494 -15.73846 -15.59148 -15.53384 -15.20211 -15.08928 -14.85466 -14.62943 -14.20022 -13.83239 -13.48364 -13.40473 -13.28237 -13.05096 -12.89079 -12.76461 -12.71877 -12.38746 -12.34452 -12.23013 -12.05450 -11.97739 -11.82706 -11.67668 -11.52719 -11.38616 -11.09999 -10.81529 -10.27463 -10.22414 -9.72725 -8.93660 -7.74946 -5.24467 -0.69529 -0.10815 1.36769 1.45257 1.46217 1.52299 1.56622 1.78414 2.47764 2.64287 2.81575 3.09858 3.30200 3.46437 3.53789 3.56606 3.79510 3.89663 3.91708 4.13957 4.25010 4.32228 4.37572 4.40446 4.42720 4.51162 4.62709 4.70840 4.71776 4.74207 4.84230 4.90788 4.95063 4.99014 5.12705 5.19254 5.27554 5.34276 5.43271 5.47634 5.52345 5.60065 5.82002 6.01539 6.30303 6.35560 6.69234 6.89816 7.09367 7.75779 8.44266 9.23333 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010931 B = 0.004238 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2560.875336 B = 6605.959080 C = 8072.851744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.308 6.308 3 C 0.484 3.516 4 N -0.554 5.554 5 C 0.204 3.796 6 C -0.204 4.204 7 C 0.152 3.848 8 C 0.579 3.421 9 O -0.554 6.554 10 N -0.588 5.588 11 C 0.113 3.887 12 C -0.110 4.110 13 H 0.102 0.898 14 C 0.157 3.843 15 N -0.618 5.618 16 C -0.235 4.235 17 H 0.082 0.918 18 C -0.066 4.066 19 N -0.947 5.947 20 Si 0.981 3.019 21 H -0.267 1.267 22 H -0.287 1.287 23 H -0.295 1.295 24 C 0.142 3.858 25 C -0.078 4.078 26 C -0.114 4.114 27 C 0.120 3.880 28 N -0.519 5.519 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.234 0.766 33 H 0.181 0.819 34 H 0.099 0.901 35 H 0.085 0.915 36 H -0.031 1.031 37 H 0.089 0.911 38 H 0.247 0.753 39 H 0.000 1.000 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 8.652 14.657 18.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.209 6.209 3 C 0.181 3.819 4 N -0.284 5.284 5 C 0.037 3.963 6 C -0.227 4.227 7 C 0.006 3.994 8 C 0.366 3.634 9 O -0.433 6.433 10 N -0.318 5.318 11 C -0.010 4.010 12 C -0.131 4.131 13 H 0.120 0.880 14 C 0.031 3.969 15 N -0.341 5.341 16 C -0.364 4.364 17 H 0.099 0.901 18 C -0.258 4.258 19 N -0.597 5.597 20 Si 0.809 3.191 21 H -0.191 1.191 22 H -0.214 1.214 23 H -0.223 1.223 24 C 0.016 3.984 25 C -0.080 4.080 26 C -0.172 4.172 27 C -0.002 4.002 28 N -0.249 5.249 29 H 0.145 0.855 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.250 0.750 33 H 0.199 0.801 34 H 0.117 0.883 35 H 0.103 0.897 36 H -0.013 1.013 37 H 0.107 0.893 38 H 0.057 0.943 39 H 0.017 0.983 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.119 0.881 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.020 7.908 14.459 18.328 hybrid contribution 0.173 0.359 -1.375 1.432 sum -7.847 8.267 13.084 17.353 Atomic orbital electron populations 1.23296 0.73446 1.05470 1.03223 1.86132 1.25606 1.22419 1.86731 1.20895 0.85748 0.85810 0.89405 1.68126 1.41223 0.99640 1.19399 1.23936 0.91812 0.95187 0.85327 1.23057 0.96355 1.00401 1.02926 1.21356 0.94028 0.89332 0.94722 1.17614 0.85416 0.82922 0.77460 1.90746 1.70922 1.28828 1.52785 1.48403 1.08386 1.06436 1.68558 1.22494 0.98619 0.78898 1.00967 1.23389 0.94126 0.98761 0.96777 0.87977 1.22028 0.86975 1.00709 0.87187 1.44805 1.20601 1.51002 1.17709 1.19506 1.03578 1.20279 0.93021 0.90060 1.25616 0.96712 1.00859 1.02647 1.69907 1.12394 1.38657 1.38711 0.84970 0.77451 0.77716 0.78964 1.19113 1.21399 1.22258 1.21589 0.95249 0.91380 0.90177 1.22137 0.96513 0.94576 0.94813 1.21593 0.95910 0.99283 1.00372 1.22270 0.79024 0.97476 1.01470 1.67642 1.08848 1.29339 1.19023 0.85525 0.90763 0.91802 0.74988 0.80139 0.88325 0.89666 1.01302 0.89338 0.94279 0.98255 0.93077 0.90227 0.93350 0.90862 0.88136 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.36 113.37 1.17 1.89 16 2 O -0.31 -8.69 10.56 -87.67 -0.93 -9.62 16 3 C 0.48 14.22 8.48 180.61 1.53 15.75 16 4 N -0.55 -12.79 9.20 -313.45 -2.88 -15.68 16 5 C 0.20 3.50 11.30 84.78 0.96 4.46 16 6 C -0.20 -4.53 9.71 22.70 0.22 -4.31 16 7 C 0.15 4.68 6.76 41.98 0.28 4.96 16 8 C 0.58 20.20 7.89 86.97 0.69 20.89 16 9 O -0.55 -20.71 16.65 -3.63 -0.06 -20.77 16 10 N -0.59 -20.19 3.32 -817.75 -2.71 -22.91 16 11 C 0.11 3.88 5.66 86.50 0.49 4.37 16 12 C -0.11 -4.19 3.80 -8.87 -0.03 -4.22 16 13 H 0.10 3.61 7.88 -2.39 -0.02 3.59 16 14 C 0.16 8.04 5.75 87.27 0.50 8.54 16 15 N -0.62 -32.97 3.39 -690.95 -2.34 -35.31 16 16 C -0.24 -13.50 10.34 84.03 0.87 -12.63 16 17 H 0.08 4.48 7.83 -2.91 -0.02 4.45 16 18 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 19 N -0.95 -57.44 10.08 21.65 0.22 -57.22 16 20 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 24 C 0.14 6.14 6.37 86.51 0.55 6.69 16 25 C -0.08 -2.67 1.08 -51.01 -0.06 -2.73 16 26 C -0.11 -3.05 8.43 71.98 0.61 -2.45 16 27 C 0.12 3.69 5.97 86.52 0.52 4.21 16 28 N -0.52 -17.09 6.80 -302.69 -2.06 -19.15 16 29 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 31 H 0.06 1.11 8.09 -2.39 -0.02 1.09 16 32 H 0.23 1.37 8.06 -2.91 -0.02 1.35 16 33 H 0.18 3.30 7.73 -2.91 -0.02 3.27 16 34 H 0.10 3.89 4.91 -2.39 -0.01 3.87 16 35 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 36 H -0.03 -1.78 7.50 -2.39 -0.02 -1.80 16 37 H 0.09 5.16 5.44 -2.39 -0.01 5.14 16 38 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.00 -0.01 7.38 -2.38 -0.02 -0.03 16 40 H 0.05 2.09 7.82 -2.39 -0.02 2.07 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.10 2.47 7.87 -2.39 -0.02 2.45 16 45 H 0.07 2.37 7.26 -2.39 -0.02 2.35 16 Total: -1.00 -76.88 363.14 1.04 -75.84 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.01 Total: 14.29 kcal Atomic # 6 Polarization: 33.32 SS G_CDS: 8.77 Total: 42.09 kcal Atomic # 7 Polarization: -140.48 SS G_CDS: -9.78 Total: -150.26 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.99 Total: -30.39 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -76.88 1.04 -75.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091843147.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.879 kcal (2) G-P(sol) polarization free energy of solvation -76.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds