Wall clock time and date at job start Tue Mar 31 2020 16:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.54029 * 112.12252 * 2 1 4 4 N 1.48335 * 104.52778 * 97.20317 * 3 2 1 5 5 C 1.36937 * 128.19402 * 221.76874 * 4 3 2 6 6 H 1.08001 * 120.00434 * 15.30333 * 5 4 3 7 7 C 1.38812 * 120.00025 * 195.30858 * 5 4 3 8 8 N 1.31627 * 119.99990 * 10.25948 * 7 5 4 9 9 Si 1.86800 * 120.00320 * 190.25966 * 7 5 4 10 10 H 1.48500 * 109.47145 * 265.02174 * 9 7 5 11 11 H 1.48504 * 109.47050 * 145.02062 * 9 7 5 12 12 H 1.48504 * 109.46925 * 25.02389 * 9 7 5 13 13 C 1.48330 * 103.60703 * 41.51254 * 4 3 2 14 14 C 1.54454 * 104.32156 * 318.45037 * 13 4 3 15 15 H 1.09006 * 112.30047 * 263.01397 * 14 13 4 16 16 C 1.53745 * 109.01738 * 137.92729 * 14 13 4 17 17 N 1.48249 * 105.90154 * 229.74707 * 16 14 13 18 18 C 1.34775 * 126.41130 * 211.08409 * 17 16 14 19 19 O 1.21682 * 119.99807 * 173.97181 * 18 17 16 20 20 C 1.46810 * 120.00203 * 353.98060 * 18 17 16 21 21 C 1.36352 * 125.85054 * 173.24645 * 20 18 17 22 22 C 1.41305 * 107.01248 * 179.97438 * 21 20 18 23 23 C 1.47388 * 126.46316 * 180.02562 * 22 21 20 24 24 N 1.34771 * 120.00380 * 179.97438 * 23 22 21 25 25 O 1.21613 * 120.00020 * 0.02562 * 23 22 21 26 26 C 1.38206 * 107.07160 * 359.97438 * 22 21 20 27 27 N 1.34265 * 108.39830 * 359.76913 * 26 22 21 28 28 H 0.96997 * 125.39005 * 180.26425 * 27 26 22 29 29 C 1.47196 * 106.88074 * 30.82989 * 17 16 14 30 30 H 1.09004 * 109.46801 * 302.41531 * 1 2 3 31 31 H 1.08998 * 109.47135 * 62.41509 * 1 2 3 32 32 H 1.09005 * 109.47009 * 182.41894 * 1 2 3 33 33 H 1.08994 * 110.39697 * 338.41114 * 3 2 1 34 34 H 1.08997 * 110.32751 * 215.96226 * 3 2 1 35 35 H 0.96998 * 119.99986 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.46475 * 77.15980 * 13 4 3 37 37 H 1.09001 * 110.46478 * 199.74279 * 13 4 3 38 38 H 1.09000 * 110.06223 * 348.69344 * 16 14 13 39 39 H 1.08989 * 110.06417 * 110.21149 * 16 14 13 40 40 H 1.07999 * 126.49067 * 359.97438 * 21 20 18 41 41 H 0.97004 * 119.99526 * 0.02562 * 24 23 22 42 42 H 0.96994 * 120.00755 * 180.02562 * 24 23 22 43 43 H 1.08004 * 125.79651 * 180.02562 * 26 22 21 44 44 H 1.09000 * 110.06015 * 209.64304 * 29 17 16 45 45 H 1.09004 * 110.06308 * 88.12996 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1101 1.4269 0.0000 4 7 2.4170 1.7038 1.4246 5 6 2.2026 2.8590 2.1279 6 1 1.5450 3.6185 1.7314 7 6 2.8305 3.0540 3.3504 8 7 3.7812 2.2316 3.7406 9 14 2.3262 4.4836 4.4420 10 1 3.2283 5.6371 4.1952 11 1 2.4220 4.0762 5.8668 12 1 0.9274 4.8739 4.1317 13 6 3.0053 0.4311 1.9086 14 6 2.1222 -0.6645 1.2720 15 1 1.3492 -1.0205 1.9532 16 6 3.0230 -1.8032 0.7664 17 7 2.6007 -2.0657 -0.6302 18 6 2.6417 -3.2518 -1.2689 19 8 2.1632 -3.3600 -2.3825 20 6 3.2635 -4.4132 -0.6211 21 6 3.2574 -5.6911 -1.0966 22 6 3.9666 -6.4823 -0.1650 23 6 4.2190 -7.9313 -0.2592 24 7 4.9155 -8.5584 0.7093 25 8 3.7997 -8.5610 -1.2114 26 6 4.3797 -5.6408 0.8505 27 7 3.9589 -4.3975 0.5682 28 1 4.1175 -3.6128 1.1159 29 6 2.1238 -0.7863 -1.1802 30 1 -0.3633 0.5509 0.8676 31 1 -0.3633 0.4759 -0.9108 32 1 -0.3633 -1.0268 0.0434 33 1 1.3731 2.1365 -0.3759 34 1 3.0191 1.4661 -0.6002 35 1 4.2197 2.3676 4.5950 36 1 4.0365 0.3344 1.5689 37 1 2.9547 0.3771 2.9961 38 1 4.0674 -1.4919 0.7892 39 1 2.8836 -2.6917 1.3820 40 1 2.7977 -6.0337 -2.0119 41 1 5.2502 -8.0561 1.4686 42 1 5.0820 -9.5120 0.6472 43 1 4.9484 -5.9330 1.7210 44 1 1.3569 -0.9659 -1.9336 45 1 2.9557 -0.2337 -1.6170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092139245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:57 Heat of formation + Delta-G solvation = 14.367512 kcal Electronic energy + Delta-G solvation = -28670.198275 eV Core-core repulsion = 24689.397703 eV Total energy + Delta-G solvation = -3980.800571 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88662 -40.13289 -38.99879 -38.18305 -35.17520 -33.89500 -32.94764 -31.56204 -31.02638 -30.19760 -29.60634 -26.79299 -25.88239 -25.40905 -23.58273 -23.17747 -21.54585 -20.79008 -20.33642 -19.78220 -18.87257 -17.99846 -16.98190 -16.77678 -16.69322 -16.17161 -15.80808 -15.24701 -15.07821 -14.82060 -14.50790 -14.22771 -14.01157 -13.79830 -13.60290 -13.47964 -13.33162 -12.90546 -12.67087 -12.53164 -12.27429 -11.85709 -11.74378 -11.46232 -11.12951 -10.92308 -10.81138 -10.42419 -10.33759 -10.22254 -10.15560 -9.98850 -9.91300 -9.84552 -9.81997 -9.36455 -8.84273 -8.77843 -8.51205 -7.00519 -5.93356 -3.26844 1.23298 1.62119 2.68789 2.90579 3.15283 3.29135 3.36076 3.37270 3.41855 3.43801 4.32562 4.36242 4.51629 4.60887 4.68168 4.83531 5.01753 5.02793 5.18694 5.32427 5.38463 5.43174 5.53563 5.57164 5.73561 5.80200 5.87478 5.91959 6.00492 6.08397 6.15876 6.24301 6.30777 6.44590 6.47673 6.55546 6.56920 6.61649 6.75290 6.92590 7.08811 7.15588 7.32346 7.47374 7.56578 8.04710 8.08236 8.13335 8.96703 9.60276 10.37023 11.20968 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.002712 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.276277 B =10321.440603 C =11444.920549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.085 4.085 3 C 0.135 3.865 4 N -0.591 5.591 5 C -0.224 4.224 6 H 0.077 0.923 7 C -0.005 4.005 8 N -0.916 5.916 9 Si 0.911 3.089 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.162 3.838 14 C -0.116 4.116 15 H 0.085 0.915 16 C 0.094 3.906 17 N -0.616 5.616 18 C 0.602 3.398 19 O -0.531 6.531 20 C -0.049 4.049 21 C -0.048 4.048 22 C -0.241 4.241 23 C 0.595 3.405 24 N -0.856 5.856 25 O -0.546 6.546 26 C 0.069 3.931 27 N -0.524 5.524 28 H 0.426 0.574 29 C 0.120 3.880 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.028 0.972 35 H 0.254 0.746 36 H 0.024 0.976 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.158 0.842 41 H 0.398 0.602 42 H 0.403 0.597 43 H 0.181 0.819 44 H 0.079 0.921 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.338 -14.945 -1.583 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.088 4.088 3 C 0.008 3.992 4 N -0.314 5.314 5 C -0.352 4.352 6 H 0.095 0.905 7 C -0.202 4.202 8 N -0.563 5.563 9 Si 0.741 3.259 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.205 1.205 13 C 0.035 3.965 14 C -0.137 4.137 15 H 0.104 0.896 16 C -0.029 4.029 17 N -0.349 5.349 18 C 0.392 3.608 19 O -0.408 6.408 20 C -0.160 4.160 21 C -0.073 4.073 22 C -0.251 4.251 23 C 0.382 3.618 24 N -0.420 5.420 25 O -0.424 6.424 26 C -0.074 4.074 27 N -0.124 5.124 28 H 0.271 0.729 29 C -0.003 4.003 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.176 0.824 41 H 0.226 0.774 42 H 0.233 0.767 43 H 0.198 0.802 44 H 0.098 0.902 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.796 -14.946 -2.650 15.285 hybrid contribution 0.332 0.900 1.473 1.758 sum 2.129 -14.045 -1.177 14.254 Atomic orbital electron populations 1.21595 0.93222 1.00920 1.02061 1.22295 0.95913 0.97377 0.93188 1.21813 0.96842 0.91964 0.88537 1.45015 1.72181 1.10123 1.04074 1.18993 1.21431 0.94272 1.00518 0.90521 1.24865 0.97108 0.98900 0.99340 1.69872 1.25407 1.39013 1.21989 0.86121 0.78181 0.81602 0.79972 1.21500 1.21567 1.20481 1.21753 0.91970 0.82411 1.00326 1.23263 0.98293 0.95156 0.96947 0.89647 1.22737 0.99939 0.98691 0.81522 1.48808 1.63493 1.08337 1.14244 1.16666 0.79116 0.80249 0.84799 1.90846 1.47607 1.83326 1.19034 1.20107 1.08665 0.96229 0.90985 1.21052 0.97623 0.89491 0.99153 1.19560 1.12483 0.93426 0.99642 1.17397 0.76705 0.86007 0.81658 1.43677 1.59133 1.13285 1.25857 1.90827 1.51646 1.67317 1.32616 1.22455 1.00888 0.83990 1.00062 1.42604 1.40646 1.10155 1.18974 0.72899 1.22208 0.99109 0.82404 0.96541 0.91609 0.92837 0.93426 0.92965 0.95437 0.93598 0.95783 0.89170 0.90344 0.91527 0.82419 0.77378 0.76665 0.80225 0.90236 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.59 37.16 0.32 -1.44 16 2 C -0.09 -1.33 1.07 -152.40 -0.16 -1.49 16 3 C 0.14 2.52 6.36 -2.49 -0.02 2.50 16 4 N -0.59 -13.54 3.38 -168.74 -0.57 -14.11 16 5 C -0.22 -5.76 10.37 -15.06 -0.16 -5.92 16 6 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 7 C -0.01 -0.14 5.39 -17.43 -0.09 -0.23 16 8 N -0.92 -24.74 10.91 55.49 0.61 -24.14 16 9 Si 0.91 20.71 29.57 -169.99 -5.03 15.69 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.16 3.30 5.49 -2.27 -0.01 3.29 16 14 C -0.12 -1.82 3.71 -88.28 -0.33 -2.15 16 15 H 0.09 1.35 7.93 -51.93 -0.41 0.93 16 16 C 0.09 1.19 5.06 -2.69 -0.01 1.18 16 17 N -0.62 -8.72 3.34 -172.29 -0.58 -9.29 16 18 C 0.60 9.21 7.84 -12.80 -0.10 9.11 16 19 O -0.53 -9.80 17.07 5.21 0.09 -9.71 16 20 C -0.05 -0.62 6.77 -82.41 -0.56 -1.18 16 21 C -0.05 -0.63 10.38 -39.10 -0.41 -1.03 16 22 C -0.24 -2.57 6.13 -105.02 -0.64 -3.22 16 23 C 0.60 6.56 8.09 -12.54 -0.10 6.46 16 24 N -0.86 -5.09 8.86 30.42 0.27 -4.82 16 25 O -0.55 -8.50 17.76 5.27 0.09 -8.41 16 26 C 0.07 0.51 11.43 -16.50 -0.19 0.32 16 27 N -0.52 -4.78 5.26 -9.30 -0.05 -4.83 16 28 H 0.43 3.25 5.38 -40.82 -0.22 3.03 16 29 C 0.12 1.75 6.27 -3.28 -0.02 1.73 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.95 7.90 -51.93 -0.41 0.54 16 34 H 0.03 0.52 7.16 -51.93 -0.37 0.15 16 35 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.02 0.51 7.18 -51.93 -0.37 0.14 16 37 H 0.09 2.10 6.47 -51.93 -0.34 1.76 16 38 H 0.08 0.95 7.05 -51.93 -0.37 0.59 16 39 H 0.07 0.68 5.72 -51.94 -0.30 0.39 16 40 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.40 1.05 7.74 -40.82 -0.32 0.73 16 42 H 0.40 1.95 8.93 -40.82 -0.36 1.59 16 43 H 0.18 0.46 7.44 -52.48 -0.39 0.07 16 44 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 45 H 0.07 1.05 7.11 -51.93 -0.37 0.69 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -34.25 362.63 -8.04 -42.29 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.86 Total: 3.92 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -2.48 Total: 7.94 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.32 Total: -57.18 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.18 Total: -18.12 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.25 -8.04 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092139245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.657 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds