Wall clock time and date at job start Tue Mar 31 2020 16:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.54029 * 112.12252 * 2 1 4 4 N 1.48335 * 104.52778 * 97.20317 * 3 2 1 5 5 C 1.36937 * 128.19402 * 221.76874 * 4 3 2 6 6 H 1.08001 * 120.00434 * 15.30333 * 5 4 3 7 7 C 1.38812 * 120.00025 * 195.30858 * 5 4 3 8 8 N 1.31627 * 119.99990 * 10.25948 * 7 5 4 9 9 Si 1.86800 * 120.00320 * 190.25966 * 7 5 4 10 10 H 1.48500 * 109.47145 * 265.02174 * 9 7 5 11 11 H 1.48504 * 109.47050 * 145.02062 * 9 7 5 12 12 H 1.48504 * 109.46925 * 25.02389 * 9 7 5 13 13 C 1.48330 * 103.60703 * 41.51254 * 4 3 2 14 14 C 1.54454 * 104.32156 * 318.45037 * 13 4 3 15 15 H 1.09006 * 112.30047 * 263.01397 * 14 13 4 16 16 C 1.53745 * 109.01738 * 137.92729 * 14 13 4 17 17 N 1.48249 * 105.90154 * 229.74707 * 16 14 13 18 18 C 1.34775 * 126.41130 * 211.08409 * 17 16 14 19 19 O 1.21682 * 119.99807 * 173.97181 * 18 17 16 20 20 C 1.46810 * 120.00203 * 353.98060 * 18 17 16 21 21 C 1.36352 * 125.85054 * 173.24645 * 20 18 17 22 22 C 1.41305 * 107.01248 * 179.97438 * 21 20 18 23 23 C 1.47388 * 126.46316 * 180.02562 * 22 21 20 24 24 N 1.34771 * 120.00380 * 179.97438 * 23 22 21 25 25 O 1.21613 * 120.00020 * 0.02562 * 23 22 21 26 26 C 1.38206 * 107.07160 * 359.97438 * 22 21 20 27 27 N 1.34265 * 108.39830 * 359.76913 * 26 22 21 28 28 H 0.96997 * 125.39005 * 180.26425 * 27 26 22 29 29 C 1.47196 * 106.88074 * 30.82989 * 17 16 14 30 30 H 1.09004 * 109.46801 * 302.41531 * 1 2 3 31 31 H 1.08998 * 109.47135 * 62.41509 * 1 2 3 32 32 H 1.09005 * 109.47009 * 182.41894 * 1 2 3 33 33 H 1.08994 * 110.39697 * 338.41114 * 3 2 1 34 34 H 1.08997 * 110.32751 * 215.96226 * 3 2 1 35 35 H 0.96998 * 119.99986 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.46475 * 77.15980 * 13 4 3 37 37 H 1.09001 * 110.46478 * 199.74279 * 13 4 3 38 38 H 1.09000 * 110.06223 * 348.69344 * 16 14 13 39 39 H 1.08989 * 110.06417 * 110.21149 * 16 14 13 40 40 H 1.07999 * 126.49067 * 359.97438 * 21 20 18 41 41 H 0.97004 * 119.99526 * 0.02562 * 24 23 22 42 42 H 0.96994 * 120.00755 * 180.02562 * 24 23 22 43 43 H 1.08004 * 125.79651 * 180.02562 * 26 22 21 44 44 H 1.09000 * 110.06015 * 209.64304 * 29 17 16 45 45 H 1.09004 * 110.06308 * 88.12996 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1101 1.4269 0.0000 4 7 2.4170 1.7038 1.4246 5 6 2.2026 2.8590 2.1279 6 1 1.5450 3.6185 1.7314 7 6 2.8305 3.0540 3.3504 8 7 3.7812 2.2316 3.7406 9 14 2.3262 4.4836 4.4420 10 1 3.2283 5.6371 4.1952 11 1 2.4220 4.0762 5.8668 12 1 0.9274 4.8739 4.1317 13 6 3.0053 0.4311 1.9086 14 6 2.1222 -0.6645 1.2720 15 1 1.3492 -1.0205 1.9532 16 6 3.0230 -1.8032 0.7664 17 7 2.6007 -2.0657 -0.6302 18 6 2.6417 -3.2518 -1.2689 19 8 2.1632 -3.3600 -2.3825 20 6 3.2635 -4.4132 -0.6211 21 6 3.2574 -5.6911 -1.0966 22 6 3.9666 -6.4823 -0.1650 23 6 4.2190 -7.9313 -0.2592 24 7 4.9155 -8.5584 0.7093 25 8 3.7997 -8.5610 -1.2114 26 6 4.3797 -5.6408 0.8505 27 7 3.9589 -4.3975 0.5682 28 1 4.1175 -3.6128 1.1159 29 6 2.1238 -0.7863 -1.1802 30 1 -0.3633 0.5509 0.8676 31 1 -0.3633 0.4759 -0.9108 32 1 -0.3633 -1.0268 0.0434 33 1 1.3731 2.1365 -0.3759 34 1 3.0191 1.4661 -0.6002 35 1 4.2197 2.3676 4.5950 36 1 4.0365 0.3344 1.5689 37 1 2.9547 0.3771 2.9961 38 1 4.0674 -1.4919 0.7892 39 1 2.8836 -2.6917 1.3820 40 1 2.7977 -6.0337 -2.0119 41 1 5.2502 -8.0561 1.4686 42 1 5.0820 -9.5120 0.6472 43 1 4.9484 -5.9330 1.7210 44 1 1.3569 -0.9659 -1.9336 45 1 2.9557 -0.2337 -1.6170 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092139245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:56 Heat of formation + Delta-G solvation = -11.743586 kcal Electronic energy + Delta-G solvation = -28671.330537 eV Core-core repulsion = 24689.397703 eV Total energy + Delta-G solvation = -3981.932834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.76895 -41.33963 -39.92723 -39.40322 -36.64692 -34.68220 -34.47302 -32.76337 -32.19676 -31.63233 -30.59931 -28.08270 -27.43129 -26.79565 -24.55512 -24.37201 -22.66865 -22.26671 -21.30843 -20.58934 -20.17601 -19.00639 -18.57748 -17.78904 -17.54452 -17.20255 -16.93731 -16.69790 -16.18249 -15.98578 -15.90128 -15.45197 -15.19573 -15.06200 -14.72593 -14.55780 -14.47439 -14.12492 -13.89145 -13.67389 -13.39337 -13.24647 -13.20632 -13.05509 -12.69778 -12.61117 -12.29708 -11.97103 -11.78214 -11.65251 -11.50135 -11.41895 -11.25577 -11.14584 -10.69911 -10.61781 -10.23110 -9.91955 -9.39815 -8.84812 -7.89183 -5.22550 0.35574 0.76511 1.48301 1.50087 1.58421 1.69806 1.99867 2.12783 2.50334 2.56880 2.76024 3.25281 3.32116 3.38443 3.61836 3.87077 3.90299 3.93244 4.02704 4.07982 4.14705 4.23319 4.26713 4.52203 4.55183 4.66123 4.73971 4.77894 4.86868 4.88329 4.90102 4.97085 5.11664 5.20237 5.22607 5.37417 5.39692 5.46765 5.56295 5.59158 5.71033 5.99891 6.21671 6.24464 6.34277 6.61489 6.92702 7.05397 7.47276 7.71223 8.50445 9.24035 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.002712 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.276277 B =10321.440603 C =11444.920549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C 0.134 3.866 4 N -0.616 5.616 5 C -0.233 4.233 6 H 0.075 0.925 7 C -0.056 4.056 8 N -0.940 5.940 9 Si 0.970 3.030 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.273 1.273 13 C 0.169 3.831 14 C -0.105 4.105 15 H 0.090 0.910 16 C 0.101 3.899 17 N -0.613 5.613 18 C 0.601 3.399 19 O -0.573 6.573 20 C -0.069 4.069 21 C -0.064 4.064 22 C -0.265 4.265 23 C 0.592 3.408 24 N -0.828 5.828 25 O -0.605 6.605 26 C 0.119 3.881 27 N -0.515 5.515 28 H 0.436 0.564 29 C 0.123 3.877 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.028 0.972 35 H 0.250 0.750 36 H 0.015 0.985 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.132 0.868 41 H 0.418 0.582 42 H 0.411 0.589 43 H 0.242 0.758 44 H 0.078 0.922 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -15.986 0.128 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.078 4.078 3 C 0.008 3.992 4 N -0.340 5.340 5 C -0.362 4.362 6 H 0.093 0.907 7 C -0.250 4.250 8 N -0.588 5.588 9 Si 0.798 3.202 10 H -0.217 1.217 11 H -0.219 1.219 12 H -0.198 1.198 13 C 0.043 3.957 14 C -0.126 4.126 15 H 0.108 0.892 16 C -0.021 4.021 17 N -0.345 5.345 18 C 0.393 3.607 19 O -0.454 6.454 20 C -0.179 4.179 21 C -0.091 4.091 22 C -0.275 4.275 23 C 0.380 3.620 24 N -0.392 5.392 25 O -0.487 6.487 26 C -0.025 4.025 27 N -0.115 5.115 28 H 0.283 0.717 29 C 0.000 4.000 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.150 0.850 41 H 0.250 0.750 42 H 0.243 0.757 43 H 0.258 0.742 44 H 0.097 0.903 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.595 -15.976 -0.893 16.210 hybrid contribution 0.139 1.206 0.944 1.538 sum 2.734 -14.770 0.051 15.021 Atomic orbital electron populations 1.21540 0.92205 1.01432 1.02043 1.22160 0.96587 0.95485 0.93594 1.21932 0.96981 0.93824 0.86433 1.45276 1.72435 1.10302 1.05955 1.19267 1.20867 0.95176 1.00895 0.90745 1.25536 0.97591 1.01280 1.00586 1.70018 1.26403 1.40381 1.22031 0.85208 0.77954 0.78933 0.78063 1.21732 1.21866 1.19762 1.21605 0.92307 0.83097 0.98688 1.23065 0.98012 0.94814 0.96701 0.89218 1.22718 0.99594 0.98839 0.80950 1.48759 1.63187 1.07871 1.14677 1.16974 0.78577 0.80791 0.84379 1.90817 1.49586 1.84010 1.20938 1.19597 1.10639 0.94871 0.92823 1.21037 0.98287 0.90594 0.99176 1.19582 1.13690 0.93704 1.00487 1.17527 0.76671 0.86115 0.81702 1.43417 1.56990 1.13807 1.24999 1.90803 1.54368 1.68393 1.35177 1.23293 0.97477 0.82070 0.99695 1.42535 1.39935 1.11266 1.17760 0.71722 1.22105 0.99158 0.82688 0.96006 0.93109 0.91542 0.92452 0.92919 0.95378 0.94124 0.96739 0.92220 0.89304 0.88377 0.84959 0.74975 0.75705 0.74229 0.90317 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.19 8.59 71.98 0.62 -2.58 16 2 C -0.08 -2.28 1.07 -50.81 -0.05 -2.34 16 3 C 0.13 4.94 6.36 86.37 0.55 5.49 16 4 N -0.62 -28.31 3.38 -687.76 -2.32 -30.63 16 5 C -0.23 -12.06 10.37 84.03 0.87 -11.19 16 6 H 0.07 3.77 7.85 -2.91 -0.02 3.75 16 7 C -0.06 -2.93 5.39 84.86 0.46 -2.47 16 8 N -0.94 -51.29 10.91 21.65 0.24 -51.06 16 9 Si 0.97 42.76 29.57 68.60 2.03 44.79 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 13 C 0.17 6.86 5.49 86.52 0.48 7.34 16 14 C -0.11 -3.16 3.71 -9.28 -0.03 -3.19 16 15 H 0.09 2.66 7.93 -2.38 -0.02 2.64 16 16 C 0.10 2.31 5.06 86.29 0.44 2.74 16 17 N -0.61 -16.40 3.34 -817.22 -2.73 -19.13 16 18 C 0.60 17.99 7.84 86.49 0.68 18.67 16 19 O -0.57 -21.55 17.07 -4.29 -0.07 -21.62 16 20 C -0.07 -1.65 6.77 40.01 0.27 -1.38 16 21 C -0.06 -1.69 10.38 22.58 0.23 -1.46 16 22 C -0.27 -5.08 6.13 -20.12 -0.12 -5.20 16 23 C 0.59 12.11 8.09 86.65 0.70 12.81 16 24 N -0.83 -7.10 8.86 -175.91 -1.56 -8.66 16 25 O -0.61 -19.09 17.76 -4.07 -0.07 -19.16 16 26 C 0.12 1.18 11.43 84.31 0.96 2.14 16 27 N -0.51 -7.43 5.26 -183.35 -0.97 -8.40 16 28 H 0.44 4.69 5.38 -92.71 -0.50 4.19 16 29 C 0.12 3.47 6.27 86.50 0.54 4.01 16 30 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.05 1.90 7.90 -2.39 -0.02 1.88 16 34 H 0.03 1.04 7.16 -2.39 -0.02 1.03 16 35 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 36 H 0.01 0.62 7.18 -2.39 -0.02 0.60 16 37 H 0.06 2.80 6.47 -2.39 -0.02 2.78 16 38 H 0.09 1.91 7.05 -2.39 -0.02 1.90 16 39 H 0.10 1.64 5.72 -2.39 -0.01 1.62 16 40 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 41 H 0.42 0.08 7.74 -92.71 -0.72 -0.64 16 42 H 0.41 2.82 8.93 -92.71 -0.83 1.99 16 43 H 0.24 -0.65 7.44 -2.91 -0.02 -0.67 16 44 H 0.08 2.27 7.58 -2.39 -0.02 2.25 16 45 H 0.07 2.07 7.11 -2.38 -0.02 2.06 16 Total: -1.00 -79.22 362.63 0.15 -79.06 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -0.97 Total: 11.40 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 6.59 Total: 23.40 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -7.34 Total: -117.87 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.15 Total: -40.79 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -79.22 0.15 -79.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092139245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.319 kcal (2) G-P(sol) polarization free energy of solvation -79.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds