Wall clock time and date at job start Tue Mar 31 2020 16:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35525 * 117.00078 * 2 1 4 4 C 1.39346 * 120.02640 * 179.97438 * 3 2 1 5 5 C 1.38412 * 118.03414 * 180.02562 * 4 3 2 6 6 C 1.39982 * 117.97253 * 0.02562 * 5 4 3 7 7 C 1.47932 * 120.11982 * 179.97438 * 6 5 4 8 8 O 1.21548 * 119.99849 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99864 * 179.97438 * 7 6 5 10 10 C 1.48246 * 126.41765 * 359.69407 * 9 7 6 11 11 C 1.53748 * 105.90199 * 211.08752 * 10 9 7 12 12 H 1.08998 * 112.27917 * 104.64865 * 11 10 9 13 13 C 1.54449 * 109.01488 * 229.74278 * 11 10 9 14 14 N 1.48335 * 104.32200 * 137.92635 * 13 11 10 15 15 C 1.36932 * 128.19554 * 138.19706 * 14 13 11 16 16 H 1.08004 * 119.99705 * 195.99902 * 15 14 13 17 17 C 1.38807 * 120.00218 * 15.99821 * 15 14 13 18 18 N 1.31622 * 120.00118 * 9.18306 * 17 15 14 19 19 Si 1.86807 * 120.00077 * 189.18054 * 17 15 14 20 20 H 1.48502 * 109.46965 * 265.16152 * 19 17 15 21 21 H 1.48498 * 109.46929 * 145.16021 * 19 17 15 22 22 H 1.48494 * 109.47001 * 25.15816 * 19 17 15 23 23 C 1.48333 * 103.60189 * 318.45129 * 14 13 11 24 24 C 1.54034 * 104.52982 * 41.51392 * 23 14 13 25 25 C 1.53003 * 112.12242 * 97.19813 * 24 23 14 26 26 C 1.47197 * 126.70165 * 179.97438 * 9 7 6 27 27 N 1.32753 * 119.76229 * 0.24753 * 6 5 4 28 28 N 1.28359 * 122.08618 * 359.46678 * 27 6 5 29 29 H 1.09006 * 109.47154 * 300.00183 * 1 2 3 30 30 H 1.08999 * 109.47262 * 59.99805 * 1 2 3 31 31 H 1.09005 * 109.47202 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.98228 * 0.04676 * 4 3 2 33 33 H 1.08008 * 121.02028 * 180.02562 * 5 4 3 34 34 H 1.08998 * 110.07386 * 92.14364 * 10 9 7 35 35 H 1.09000 * 110.56630 * 330.28713 * 10 9 7 36 36 H 1.09006 * 110.46148 * 19.22231 * 13 11 10 37 37 H 1.08998 * 110.46825 * 256.63888 * 13 11 10 38 38 H 0.97005 * 119.99741 * 180.02562 * 18 17 15 39 39 H 1.09006 * 110.45926 * 160.25725 * 23 14 13 40 40 H 1.08996 * 110.46542 * 282.84057 * 23 14 13 41 41 H 1.09002 * 109.47221 * 302.41649 * 25 24 23 42 42 H 1.09005 * 109.47295 * 62.41693 * 25 24 23 43 43 H 1.09001 * 109.46936 * 182.41279 * 25 24 23 44 44 H 1.09003 * 110.06800 * 29.39138 * 26 9 7 45 45 H 1.08993 * 110.06946 * 267.87396 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4358 1.2811 0.0005 5 6 4.0209 2.5354 0.0011 6 6 3.1781 3.6531 0.0016 7 6 3.7528 5.0162 0.0027 8 8 4.9589 5.1672 0.0037 9 7 2.9391 6.0906 0.0027 10 6 1.4568 6.0719 -0.0048 11 6 1.0234 7.3356 -0.7657 12 1 0.6727 7.1115 -1.7731 13 6 -0.0358 8.0877 0.0697 14 7 0.3450 9.5159 -0.0547 15 6 -0.4738 10.5973 -0.2421 16 1 -0.0585 11.5386 -0.5706 17 6 -1.8376 10.4838 -0.0100 18 7 -2.3202 9.3999 0.5599 19 14 -2.9881 11.8693 -0.5062 20 1 -3.2201 12.7611 0.6584 21 1 -4.2825 11.2996 -0.9591 22 1 -2.3762 12.6486 -1.6122 23 6 1.8233 9.4945 0.0655 24 6 2.2609 8.2728 -0.7643 25 6 2.6990 8.6631 -2.1774 26 6 3.3487 7.5044 0.0043 27 7 1.8612 3.4854 0.0065 28 7 1.3222 2.3205 0.0008 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0398 0.3858 0.0002 33 1 5.0950 2.6485 0.0011 34 1 1.0771 6.1016 1.0165 35 1 1.0876 5.1827 -0.5158 36 1 0.0063 7.7716 1.1121 37 1 -1.0322 7.9219 -0.3397 38 1 -3.2733 9.3204 0.7218 39 1 2.2524 10.4076 -0.3474 40 1 2.1192 9.3704 1.1072 41 1 1.8836 9.1833 -2.6800 42 1 3.5679 9.3188 -2.1204 43 1 2.9578 7.7651 -2.7385 44 1 4.3102 7.6158 -0.4971 45 1 3.4152 7.8734 1.0277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092168777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:01 Heat of formation + Delta-G solvation = 38.384774 kcal Electronic energy + Delta-G solvation = -28926.276795 eV Core-core repulsion = 24946.517690 eV Total energy + Delta-G solvation = -3979.759105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63394 -40.12856 -38.91188 -38.12505 -35.01693 -33.57045 -32.90457 -31.96711 -30.81337 -29.81798 -28.04640 -26.85211 -25.99803 -25.09536 -24.97030 -24.01884 -22.36882 -20.47583 -20.19783 -18.95000 -18.58364 -18.22343 -16.98691 -16.70106 -16.58021 -15.90444 -15.59892 -14.95932 -14.80419 -14.65313 -14.46398 -14.29830 -14.11874 -13.68849 -13.48190 -13.28037 -12.90692 -12.65582 -12.37345 -12.08560 -11.98430 -11.91219 -11.60782 -11.45883 -11.28772 -10.96532 -10.81896 -10.68062 -10.64857 -10.24877 -10.18857 -9.97548 -9.85280 -9.77636 -9.67794 -9.57366 -9.47139 -8.66585 -8.47382 -6.83648 -5.77530 -3.11948 0.27399 0.40890 2.46144 2.54515 2.91495 3.38730 3.43546 3.44922 3.46589 3.66239 3.93861 4.31801 4.47428 4.51343 4.58098 4.87916 4.94090 4.96983 5.01288 5.10635 5.27058 5.29168 5.40109 5.50307 5.60538 5.67615 5.70889 5.73163 5.87289 5.94686 6.11115 6.15359 6.35530 6.38715 6.41105 6.50259 6.57838 6.58426 6.72185 6.79636 6.93852 7.34302 7.55295 7.60748 7.73389 8.01127 8.22119 8.25759 9.11868 9.75315 10.53859 11.36217 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.003148 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.543710 B = 8892.118716 C =10444.277184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.298 6.298 3 C 0.275 3.725 4 C -0.140 4.140 5 C -0.033 4.033 6 C 0.000 4.000 7 C 0.589 3.411 8 O -0.544 6.544 9 N -0.590 5.590 10 C 0.101 3.899 11 C -0.118 4.118 12 H 0.081 0.919 13 C 0.163 3.837 14 N -0.593 5.593 15 C -0.224 4.224 16 H 0.075 0.925 17 C -0.005 4.005 18 N -0.914 5.914 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.137 3.863 24 C -0.088 4.088 25 C -0.119 4.119 26 C 0.118 3.882 27 N -0.159 5.159 28 N -0.298 5.298 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.025 0.975 37 H 0.089 0.911 38 H 0.254 0.746 39 H 0.049 0.951 40 H 0.027 0.973 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.066 -17.760 -2.087 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.202 6.202 3 C 0.091 3.909 4 C -0.170 4.170 5 C -0.061 4.061 6 C -0.149 4.149 7 C 0.375 3.625 8 O -0.422 6.422 9 N -0.320 5.320 10 C -0.022 4.022 11 C -0.139 4.139 12 H 0.100 0.900 13 C 0.037 3.963 14 N -0.316 5.316 15 C -0.352 4.352 16 H 0.093 0.907 17 C -0.202 4.202 18 N -0.560 5.560 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.010 3.990 24 C -0.090 4.090 25 C -0.177 4.177 26 C -0.004 4.004 27 N -0.007 5.007 28 N -0.156 5.156 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.181 0.819 33 H 0.187 0.813 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.043 0.957 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.076 -17.285 -2.046 19.630 hybrid contribution 0.389 0.001 -0.116 0.406 sum 9.465 -17.284 -2.163 19.824 Atomic orbital electron populations 1.23094 0.75980 1.03789 1.03454 1.86202 1.23888 1.23262 1.86823 1.21700 0.91053 0.87265 0.90856 1.21518 0.92231 0.99822 1.03418 1.22274 1.02941 0.90000 0.90877 1.22717 0.92067 0.96089 1.03999 1.16992 0.85394 0.82197 0.77938 1.90786 1.13421 1.85530 1.52450 1.48763 1.08659 1.05705 1.68907 1.22972 0.77224 1.00222 1.01748 1.23299 0.97039 0.93269 1.00327 0.90027 1.21749 0.96678 0.82809 0.95081 1.45039 0.99647 1.02723 1.84163 1.18971 0.88277 0.89955 1.38008 0.90682 1.24874 0.97377 0.97875 1.00110 1.69889 1.12501 1.27548 1.46083 0.86142 0.80519 0.81187 0.78135 1.21605 1.21618 1.20567 1.21785 0.87306 0.94412 0.95515 1.22315 0.93782 0.96934 0.95992 1.21583 1.00938 1.00325 0.94808 1.22261 0.98503 0.78934 1.00719 1.73327 1.09857 1.13095 1.04427 1.73299 1.31438 0.94097 1.16797 0.91453 0.91478 0.87922 0.81929 0.81312 0.90675 0.87801 0.95725 0.89245 0.93627 0.93203 0.95575 0.91629 0.93056 0.93572 0.90506 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.39 101.05 1.05 1.28 16 2 O -0.30 -2.80 10.48 -18.27 -0.19 -2.99 16 3 C 0.28 2.97 7.57 -16.78 -0.13 2.85 16 4 C -0.14 -1.22 10.14 -39.11 -0.40 -1.62 16 5 C -0.03 -0.33 9.72 -38.86 -0.38 -0.71 16 6 C 0.00 0.00 6.80 -82.85 -0.56 -0.57 16 7 C 0.59 9.21 7.87 -12.29 -0.10 9.12 16 8 O -0.54 -9.37 16.62 5.32 0.09 -9.28 16 9 N -0.59 -9.44 3.34 -171.85 -0.57 -10.01 16 10 C 0.10 1.65 5.86 -2.69 -0.02 1.63 16 11 C -0.12 -2.17 3.71 -88.29 -0.33 -2.49 16 12 H 0.08 1.50 7.93 -51.93 -0.41 1.08 16 13 C 0.16 3.73 5.49 -2.27 -0.01 3.72 16 14 N -0.59 -14.58 3.38 -168.73 -0.57 -15.15 16 15 C -0.22 -6.07 10.37 -15.06 -0.16 -6.22 16 16 H 0.08 1.98 7.85 -52.48 -0.41 1.56 16 17 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 18 N -0.91 -26.22 10.88 55.49 0.60 -25.62 16 19 Si 0.91 21.63 29.56 -169.99 -5.03 16.61 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.14 2.74 6.36 -2.49 -0.02 2.72 16 24 C -0.09 -1.50 1.08 -152.38 -0.16 -1.66 16 25 C -0.12 -1.85 8.59 37.16 0.32 -1.53 16 26 C 0.12 1.87 6.24 -3.26 -0.02 1.85 16 27 N -0.16 -2.27 7.77 33.32 0.26 -2.01 16 28 N -0.30 -3.91 10.40 30.54 0.32 -3.60 16 29 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.17 1.40 7.71 -52.48 -0.40 0.99 16 34 H 0.08 1.29 7.11 -51.93 -0.37 0.92 16 35 H 0.10 1.66 5.52 -51.93 -0.29 1.38 16 36 H 0.02 0.59 7.18 -51.93 -0.37 0.22 16 37 H 0.09 2.32 6.46 -51.93 -0.34 1.98 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.05 0.96 7.90 -51.93 -0.41 0.55 16 40 H 0.03 0.53 7.16 -51.93 -0.37 0.16 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.17 7.63 -51.93 -0.40 0.77 16 45 H 0.07 1.16 7.10 -51.93 -0.37 0.79 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -31.73 364.05 -6.83 -38.56 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.23 Total: -0.12 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -1.00 Total: 8.12 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.04 Total: -56.39 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.10 Total: -12.27 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.73 -6.83 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092168777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.947 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds