Wall clock time and date at job start Tue Mar 31 2020 16:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35525 * 117.00078 * 2 1 4 4 C 1.39346 * 120.02640 * 179.97438 * 3 2 1 5 5 C 1.38412 * 118.03414 * 180.02562 * 4 3 2 6 6 C 1.39982 * 117.97253 * 0.02562 * 5 4 3 7 7 C 1.47932 * 120.11982 * 179.97438 * 6 5 4 8 8 O 1.21548 * 119.99849 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99864 * 179.97438 * 7 6 5 10 10 C 1.48246 * 126.41765 * 359.69407 * 9 7 6 11 11 C 1.53748 * 105.90199 * 211.08752 * 10 9 7 12 12 H 1.08998 * 112.27917 * 104.64865 * 11 10 9 13 13 C 1.54449 * 109.01488 * 229.74278 * 11 10 9 14 14 N 1.48335 * 104.32200 * 137.92635 * 13 11 10 15 15 C 1.36932 * 128.19554 * 138.19706 * 14 13 11 16 16 H 1.08004 * 119.99705 * 195.99902 * 15 14 13 17 17 C 1.38807 * 120.00218 * 15.99821 * 15 14 13 18 18 N 1.31622 * 120.00118 * 9.18306 * 17 15 14 19 19 Si 1.86807 * 120.00077 * 189.18054 * 17 15 14 20 20 H 1.48502 * 109.46965 * 265.16152 * 19 17 15 21 21 H 1.48498 * 109.46929 * 145.16021 * 19 17 15 22 22 H 1.48494 * 109.47001 * 25.15816 * 19 17 15 23 23 C 1.48333 * 103.60189 * 318.45129 * 14 13 11 24 24 C 1.54034 * 104.52982 * 41.51392 * 23 14 13 25 25 C 1.53003 * 112.12242 * 97.19813 * 24 23 14 26 26 C 1.47197 * 126.70165 * 179.97438 * 9 7 6 27 27 N 1.32753 * 119.76229 * 0.24753 * 6 5 4 28 28 N 1.28359 * 122.08618 * 359.46678 * 27 6 5 29 29 H 1.09006 * 109.47154 * 300.00183 * 1 2 3 30 30 H 1.08999 * 109.47262 * 59.99805 * 1 2 3 31 31 H 1.09005 * 109.47202 * 180.02562 * 1 2 3 32 32 H 1.08000 * 120.98228 * 0.04676 * 4 3 2 33 33 H 1.08008 * 121.02028 * 180.02562 * 5 4 3 34 34 H 1.08998 * 110.07386 * 92.14364 * 10 9 7 35 35 H 1.09000 * 110.56630 * 330.28713 * 10 9 7 36 36 H 1.09006 * 110.46148 * 19.22231 * 13 11 10 37 37 H 1.08998 * 110.46825 * 256.63888 * 13 11 10 38 38 H 0.97005 * 119.99741 * 180.02562 * 18 17 15 39 39 H 1.09006 * 110.45926 * 160.25725 * 23 14 13 40 40 H 1.08996 * 110.46542 * 282.84057 * 23 14 13 41 41 H 1.09002 * 109.47221 * 302.41649 * 25 24 23 42 42 H 1.09005 * 109.47295 * 62.41693 * 25 24 23 43 43 H 1.09001 * 109.46936 * 182.41279 * 25 24 23 44 44 H 1.09003 * 110.06800 * 29.39138 * 26 9 7 45 45 H 1.08993 * 110.06946 * 267.87396 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4358 1.2811 0.0005 5 6 4.0209 2.5354 0.0011 6 6 3.1781 3.6531 0.0016 7 6 3.7528 5.0162 0.0027 8 8 4.9589 5.1672 0.0037 9 7 2.9391 6.0906 0.0027 10 6 1.4568 6.0719 -0.0048 11 6 1.0234 7.3356 -0.7657 12 1 0.6727 7.1115 -1.7731 13 6 -0.0358 8.0877 0.0697 14 7 0.3450 9.5159 -0.0547 15 6 -0.4738 10.5973 -0.2421 16 1 -0.0585 11.5386 -0.5706 17 6 -1.8376 10.4838 -0.0100 18 7 -2.3202 9.3999 0.5599 19 14 -2.9881 11.8693 -0.5062 20 1 -3.2201 12.7611 0.6584 21 1 -4.2825 11.2996 -0.9591 22 1 -2.3762 12.6486 -1.6122 23 6 1.8233 9.4945 0.0655 24 6 2.2609 8.2728 -0.7643 25 6 2.6990 8.6631 -2.1774 26 6 3.3487 7.5044 0.0043 27 7 1.8612 3.4854 0.0065 28 7 1.3222 2.3205 0.0008 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 4.0398 0.3858 0.0002 33 1 5.0950 2.6485 0.0011 34 1 1.0771 6.1016 1.0165 35 1 1.0876 5.1827 -0.5158 36 1 0.0063 7.7716 1.1121 37 1 -1.0322 7.9219 -0.3397 38 1 -3.2733 9.3204 0.7218 39 1 2.2524 10.4076 -0.3474 40 1 2.1192 9.3704 1.1072 41 1 1.8836 9.1833 -2.6800 42 1 3.5679 9.3188 -2.1204 43 1 2.9578 7.7651 -2.7385 44 1 4.3102 7.6158 -0.4971 45 1 3.4152 7.8734 1.0277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092168777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:00 Heat of formation + Delta-G solvation = 16.346100 kcal Electronic energy + Delta-G solvation = -28927.232464 eV Core-core repulsion = 24946.517690 eV Total energy + Delta-G solvation = -3980.714773 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.55041 -41.42742 -39.96386 -39.24328 -36.60491 -34.57331 -34.34469 -33.13370 -32.36085 -31.48742 -28.76460 -28.07071 -27.66312 -26.63738 -26.11691 -24.91593 -23.89344 -22.18651 -21.41079 -20.05784 -19.73314 -19.16457 -18.59176 -17.99874 -17.53456 -17.17966 -16.85272 -16.64837 -15.91323 -15.64614 -15.62163 -15.50958 -15.31816 -15.07736 -14.71706 -14.66100 -14.22488 -13.96451 -13.58085 -13.46814 -13.18992 -13.07539 -12.93006 -12.75887 -12.66167 -12.62991 -12.56356 -12.25012 -11.94747 -11.75146 -11.55275 -11.46982 -11.39204 -11.37170 -11.14648 -10.76060 -10.67557 -10.34819 -9.78235 -8.83558 -7.86045 -5.21913 -0.64042 -0.38225 1.47150 1.49082 1.49757 1.59373 1.65072 1.82849 2.45293 2.51803 2.70255 3.07226 3.31432 3.36443 3.50645 3.62297 3.74021 3.80128 3.95992 3.97143 4.25372 4.26131 4.27940 4.37988 4.40489 4.42678 4.59029 4.64230 4.70679 4.73924 4.78961 4.87259 4.94529 4.96603 5.01089 5.10383 5.15814 5.24745 5.32046 5.43590 5.49659 5.59929 5.73675 5.83505 6.22854 6.33722 6.81262 7.05302 7.32299 7.72898 8.53272 9.27100 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.003148 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.543710 B = 8892.118716 C =10444.277184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.296 6.296 3 C 0.270 3.730 4 C -0.119 4.119 5 C -0.028 4.028 6 C -0.018 4.018 7 C 0.592 3.408 8 O -0.559 6.559 9 N -0.594 5.594 10 C 0.117 3.883 11 C -0.108 4.108 12 H 0.082 0.918 13 C 0.172 3.828 14 N -0.616 5.616 15 C -0.233 4.233 16 H 0.080 0.920 17 C -0.062 4.062 18 N -0.945 5.945 19 Si 0.975 3.025 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.268 1.268 23 C 0.135 3.865 24 C -0.077 4.077 25 C -0.113 4.113 26 C 0.123 3.877 27 N -0.185 5.185 28 N -0.322 5.322 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.135 0.865 32 H 0.204 0.796 33 H 0.191 0.809 34 H 0.063 0.937 35 H 0.111 0.889 36 H 0.005 0.995 37 H 0.054 0.946 38 H 0.248 0.752 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.005 -19.214 -2.907 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.199 6.199 3 C 0.086 3.914 4 C -0.148 4.148 5 C -0.056 4.056 6 C -0.167 4.167 7 C 0.379 3.621 8 O -0.438 6.438 9 N -0.324 5.324 10 C -0.006 4.006 11 C -0.129 4.129 12 H 0.101 0.899 13 C 0.045 3.955 14 N -0.340 5.340 15 C -0.362 4.362 16 H 0.098 0.902 17 C -0.255 4.255 18 N -0.593 5.593 19 Si 0.803 3.197 20 H -0.215 1.215 21 H -0.221 1.221 22 H -0.193 1.193 23 C 0.009 3.991 24 C -0.079 4.079 25 C -0.170 4.170 26 C 0.000 4.000 27 N -0.033 5.033 28 N -0.180 5.180 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.221 0.779 33 H 0.208 0.792 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.023 0.977 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.047 -18.747 -2.874 21.949 hybrid contribution -0.193 0.342 0.182 0.433 sum 10.854 -18.405 -2.692 21.536 Atomic orbital electron populations 1.23298 0.74953 1.05703 1.02811 1.86227 1.24902 1.22348 1.86423 1.22013 0.92103 0.87112 0.90166 1.21935 0.91484 1.00674 1.00727 1.22504 1.03592 0.89389 0.90097 1.22587 0.92518 0.95840 1.05727 1.17259 0.85105 0.82751 0.76970 1.90769 1.13943 1.85961 1.53127 1.48736 1.08203 1.06033 1.69457 1.22688 0.77825 0.99324 1.00736 1.23097 0.96252 0.94006 0.99585 0.89923 1.21518 0.96386 0.83110 0.94440 1.45309 1.01576 1.02766 1.84349 1.19337 0.88971 0.90807 1.37096 0.90238 1.25664 0.98889 1.00211 1.00759 1.70081 1.12234 1.29408 1.47619 0.85124 0.78180 0.78476 0.77890 1.21542 1.22094 1.19290 1.21941 0.84786 0.96233 0.96112 1.22208 0.93531 0.95338 0.96855 1.21529 1.01073 1.01125 0.93250 1.22184 0.98330 0.78826 1.00624 1.73190 1.10485 1.14052 1.05573 1.73190 1.32246 0.94526 1.18085 0.92180 0.92070 0.84751 0.77852 0.79211 0.91902 0.87154 0.97737 0.92801 0.94269 0.92337 0.95603 0.93328 0.90916 0.92348 0.89140 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.39 113.37 1.18 1.52 16 2 O -0.30 -4.89 10.48 -88.28 -0.93 -5.82 16 3 C 0.27 5.32 7.57 84.83 0.64 5.96 16 4 C -0.12 -1.69 10.14 22.58 0.23 -1.46 16 5 C -0.03 -0.50 9.72 22.73 0.22 -0.28 16 6 C -0.02 -0.45 6.80 42.00 0.29 -0.17 16 7 C 0.59 17.78 7.87 86.81 0.68 18.46 16 8 O -0.56 -18.23 16.62 -3.87 -0.06 -18.29 16 9 N -0.59 -18.53 3.34 -815.90 -2.73 -21.26 16 10 C 0.12 3.89 5.86 86.30 0.51 4.39 16 11 C -0.11 -4.04 3.71 -9.28 -0.03 -4.07 16 12 H 0.08 3.07 7.93 -2.39 -0.02 3.05 16 13 C 0.17 8.22 5.49 86.52 0.48 8.69 16 14 N -0.62 -31.03 3.38 -687.74 -2.32 -33.35 16 15 C -0.23 -12.85 10.37 84.03 0.87 -11.97 16 16 H 0.08 4.20 7.85 -2.91 -0.02 4.17 16 17 C -0.06 -3.46 5.40 84.86 0.46 -3.00 16 18 N -0.95 -56.33 10.88 21.65 0.24 -56.09 16 19 Si 0.97 45.26 29.56 68.60 2.03 47.29 16 20 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 21 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C 0.14 5.39 6.36 86.38 0.55 5.94 16 24 C -0.08 -2.57 1.08 -50.80 -0.05 -2.63 16 25 C -0.11 -3.30 8.59 71.98 0.62 -2.68 16 26 C 0.12 3.72 6.24 86.51 0.54 4.26 16 27 N -0.19 -5.23 7.77 -48.50 -0.38 -5.60 16 28 N -0.32 -8.27 10.40 -170.02 -1.77 -10.04 16 29 H 0.06 0.88 8.11 -2.38 -0.02 0.86 16 30 H 0.06 0.88 8.11 -2.39 -0.02 0.86 16 31 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.20 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.19 2.50 7.71 -2.91 -0.02 2.48 16 34 H 0.06 2.25 7.11 -2.39 -0.02 2.23 16 35 H 0.11 3.59 5.52 -2.39 -0.01 3.58 16 36 H 0.00 0.24 7.18 -2.38 -0.02 0.22 16 37 H 0.05 2.95 6.46 -2.39 -0.02 2.93 16 38 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 39 H 0.06 2.21 7.90 -2.38 -0.02 2.19 16 40 H 0.03 1.05 7.16 -2.39 -0.02 1.03 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.09 2.54 7.63 -2.39 -0.02 2.52 16 45 H 0.07 2.23 7.10 -2.39 -0.02 2.21 16 Total: -1.00 -70.27 364.05 2.26 -68.01 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 1.01 Total: 12.17 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 7.17 Total: 22.98 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -6.96 Total: -126.34 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.99 Total: -24.11 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -70.27 2.26 -68.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092168777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.356 kcal (2) G-P(sol) polarization free energy of solvation -70.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds