Wall clock time and date at job start Tue Mar 31 2020 16:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.54455 * 112.30065 * 2 1 4 4 N 1.48335 * 104.32077 * 97.55367 * 3 2 1 5 5 C 1.36941 * 128.19643 * 221.80915 * 4 3 2 6 6 H 1.08002 * 119.99958 * 15.63798 * 5 4 3 7 7 C 1.38812 * 119.99711 * 195.63793 * 5 4 3 8 8 N 1.31623 * 119.99975 * 10.54117 * 7 5 4 9 9 Si 1.86801 * 119.99968 * 190.26863 * 7 5 4 10 10 H 1.48500 * 109.47177 * 84.98358 * 9 7 5 11 11 H 1.48498 * 109.47248 * 204.98612 * 9 7 5 12 12 H 1.48499 * 109.46943 * 324.98626 * 9 7 5 13 13 C 1.48330 * 103.60065 * 42.07086 * 4 3 2 14 14 C 1.54873 * 104.11640 * 317.89500 * 13 4 3 15 15 H 1.08999 * 112.91727 * 262.97332 * 14 13 4 16 16 C 1.53746 * 108.85902 * 137.56600 * 14 13 4 17 17 N 1.47197 * 106.42656 * 229.56621 * 16 14 13 18 18 C 1.34776 * 126.70662 * 211.40086 * 17 16 14 19 19 O 1.21609 * 120.00149 * 174.28714 * 18 17 16 20 20 C 1.47393 * 119.99908 * 354.29344 * 18 17 16 21 21 C 1.38215 * 126.46067 * 352.50414 * 20 18 17 22 22 N 1.34261 * 108.39649 * 179.86508 * 21 20 18 23 23 H 0.96995 * 125.39191 * 180.17591 * 22 21 20 24 24 C 1.37785 * 109.21327 * 0.40807 * 22 21 20 25 25 C 1.46817 * 125.84773 * 179.71273 * 24 22 21 26 26 N 1.34775 * 119.99713 * 0.03884 * 25 24 22 27 27 O 1.21670 * 119.99682 * 180.02562 * 25 24 22 28 28 C 1.36351 * 108.30036 * 359.74655 * 24 22 21 29 29 C 1.47202 * 106.59418 * 31.37251 * 17 16 14 30 30 H 1.08999 * 109.47012 * 61.01225 * 1 2 3 31 31 H 1.08998 * 109.47128 * 181.01140 * 1 2 3 32 32 H 1.09000 * 109.47178 * 301.01134 * 1 2 3 33 33 H 1.09000 * 110.45689 * 338.84582 * 3 2 1 34 34 H 1.08994 * 110.57684 * 216.32187 * 3 2 1 35 35 H 0.97003 * 119.99729 * 179.72382 * 8 7 5 36 36 H 1.08998 * 110.46252 * 76.64211 * 13 4 3 37 37 H 1.09004 * 110.45737 * 199.22074 * 13 4 3 38 38 H 1.08998 * 110.06453 * 110.33423 * 16 14 13 39 39 H 1.08997 * 110.10990 * 348.83106 * 16 14 13 40 40 H 1.07999 * 125.80188 * 0.03034 * 21 20 18 41 41 H 0.97002 * 120.00347 * 359.97438 * 26 25 24 42 42 H 0.97005 * 119.99545 * 180.02562 * 26 25 24 43 43 H 1.08000 * 126.49161 * 180.02562 * 28 24 22 44 44 H 1.08999 * 110.06170 * 209.38746 * 29 17 16 45 45 H 1.08997 * 110.11184 * 87.89044 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1161 1.4290 0.0000 4 7 2.4302 1.6968 1.4248 5 6 2.2222 2.8486 2.1358 6 1 1.5608 3.6099 1.7491 7 6 2.8615 3.0375 3.3533 8 7 3.8196 2.2165 3.7280 9 14 2.3671 4.4615 4.4567 10 1 1.2050 4.0616 5.2902 11 1 3.5065 4.8241 5.3373 12 1 1.9969 5.6309 3.6196 13 6 3.0287 0.4238 1.8952 14 6 2.1338 -0.6708 1.2631 15 1 1.3672 -1.0385 1.9451 16 6 3.0310 -1.8002 0.7309 17 7 2.5950 -2.0624 -0.6503 18 6 2.6296 -3.2454 -1.2951 19 8 2.1414 -3.3479 -2.4042 20 6 3.2590 -4.4149 -0.6560 21 6 3.9762 -4.4185 0.5255 22 7 4.3815 -5.6746 0.7714 23 1 4.9021 -5.9567 1.5397 24 6 3.9455 -6.4986 -0.2432 25 6 4.1902 -7.9427 -0.3432 26 7 4.8981 -8.5741 0.6142 27 8 3.7537 -8.5695 -1.2903 28 6 3.2485 -5.7428 -1.1389 29 6 2.1130 -0.7803 -1.1896 30 1 -0.3633 0.4980 -0.8989 31 1 -0.3633 -1.0275 0.0181 32 1 -0.3633 0.5295 0.8808 33 1 1.3795 2.1429 -0.3686 34 1 3.0221 1.4715 -0.6044 35 1 4.2690 2.3510 4.5770 36 1 4.0553 0.3315 1.5409 37 1 2.9934 0.3653 2.9831 38 1 2.9050 -2.6959 1.3391 39 1 4.0746 -1.4857 0.7403 40 1 4.1743 -3.5576 1.1469 41 1 5.2463 -8.0743 1.3692 42 1 5.0601 -9.5282 0.5480 43 1 2.7772 -6.0929 -2.0453 44 1 1.3392 -0.9562 -1.9368 45 1 2.9402 -0.2251 -1.6317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092278075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:16 Heat of formation + Delta-G solvation = 15.894469 kcal Electronic energy + Delta-G solvation = -28627.586016 eV Core-core repulsion = 24646.851658 eV Total energy + Delta-G solvation = -3980.734358 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87347 -40.09892 -39.13841 -37.99740 -35.00409 -34.21728 -32.83906 -31.54776 -31.00337 -29.94577 -29.69168 -26.65079 -25.81768 -25.25180 -23.45352 -23.24501 -21.59483 -20.61565 -20.49484 -19.64042 -18.80901 -18.18606 -17.16683 -16.82240 -16.68918 -15.83421 -15.60676 -15.34501 -15.11031 -14.76270 -14.43281 -14.15445 -14.10594 -13.79692 -13.56515 -13.45370 -13.22226 -12.81603 -12.55601 -12.36247 -12.11343 -11.69528 -11.57981 -11.32938 -11.00081 -10.87409 -10.67906 -10.64922 -10.24649 -10.21759 -10.09945 -10.03159 -9.85674 -9.73225 -9.62131 -9.36758 -8.73787 -8.65893 -8.40704 -6.92571 -5.86448 -3.19603 1.10460 1.71428 2.60158 2.96354 2.97397 3.28169 3.34104 3.40069 3.40676 3.56851 4.41063 4.48186 4.60754 4.66345 4.84341 4.89326 5.08757 5.20809 5.38394 5.45610 5.49020 5.58958 5.65017 5.67073 5.73696 5.95729 6.01668 6.06145 6.11982 6.16070 6.27049 6.29712 6.37262 6.41973 6.46934 6.54475 6.69340 6.72768 6.77940 6.87182 6.95314 7.20945 7.42959 7.63853 7.78134 7.78287 8.13017 8.40436 9.03990 9.67332 10.45290 11.27657 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.002696 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.035247 B =10384.121066 C =11506.155634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 C 0.135 3.865 4 N -0.593 5.593 5 C -0.222 4.222 6 H 0.076 0.924 7 C -0.006 4.006 8 N -0.917 5.917 9 Si 0.911 3.089 10 H -0.288 1.288 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.163 3.837 14 C -0.117 4.117 15 H 0.083 0.917 16 C 0.096 3.904 17 N -0.611 5.611 18 C 0.603 3.397 19 O -0.549 6.549 20 C -0.224 4.224 21 C 0.070 3.930 22 N -0.528 5.528 23 H 0.419 0.581 24 C -0.076 4.076 25 C 0.597 3.403 26 N -0.857 5.857 27 O -0.529 6.529 28 C -0.038 4.038 29 C 0.118 3.882 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.028 0.972 35 H 0.254 0.746 36 H 0.025 0.975 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.197 0.803 41 H 0.396 0.604 42 H 0.408 0.592 43 H 0.159 0.841 44 H 0.076 0.924 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 -16.646 -1.534 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.088 4.088 3 C 0.009 3.991 4 N -0.315 5.315 5 C -0.350 4.350 6 H 0.094 0.906 7 C -0.203 4.203 8 N -0.563 5.563 9 Si 0.741 3.259 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.206 1.206 13 C 0.036 3.964 14 C -0.138 4.138 15 H 0.102 0.898 16 C -0.027 4.027 17 N -0.343 5.343 18 C 0.393 3.607 19 O -0.427 6.427 20 C -0.234 4.234 21 C -0.072 4.072 22 N -0.123 5.123 23 H 0.257 0.743 24 C -0.187 4.187 25 C 0.383 3.617 26 N -0.421 5.421 27 O -0.404 6.404 28 C -0.064 4.064 29 C -0.004 4.004 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.213 0.787 41 H 0.223 0.777 42 H 0.240 0.760 43 H 0.176 0.824 44 H 0.094 0.906 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.468 -16.988 -2.554 17.355 hybrid contribution 0.463 0.516 1.533 1.683 sum 2.931 -16.472 -1.021 16.762 Atomic orbital electron populations 1.21577 0.93458 1.00804 1.01886 1.22354 0.95700 0.97293 0.93500 1.21890 0.96724 0.92101 0.88430 1.45057 1.71713 1.10414 1.04358 1.18988 1.20928 0.94558 1.00571 0.90595 1.24853 0.97093 0.98919 0.99413 1.69874 1.24656 1.39222 1.22552 0.86158 0.77455 0.81706 0.80562 1.21494 1.21717 1.20627 1.21826 0.91835 0.82352 1.00348 1.23347 0.98251 0.95453 0.96723 0.89829 1.22648 0.99233 0.98786 0.82037 1.48416 1.63047 1.08129 1.14738 1.16958 0.78656 0.80617 0.84449 1.90767 1.47888 1.83993 1.20093 1.19659 1.10193 0.94735 0.98790 1.23383 0.98067 0.87644 0.98061 1.41757 1.42463 1.07658 1.20450 0.74275 1.19954 1.12595 0.91158 0.94959 1.17027 0.77500 0.85021 0.82147 1.43705 1.58221 1.13666 1.26466 1.90908 1.50994 1.66207 1.32303 1.21109 0.96385 0.90561 0.98342 1.22183 0.98910 0.82816 0.96528 0.92986 0.93433 0.91795 0.93163 0.95450 0.93644 0.95732 0.89277 0.90715 0.90711 0.78697 0.77682 0.76047 0.82384 0.90592 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.61 37.16 0.32 -1.50 16 2 C -0.09 -1.39 1.08 -152.17 -0.16 -1.56 16 3 C 0.14 2.60 6.37 -2.27 -0.01 2.59 16 4 N -0.59 -13.87 3.37 -168.21 -0.57 -14.44 16 5 C -0.22 -5.81 10.37 -15.06 -0.16 -5.96 16 6 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 7 C -0.01 -0.16 5.39 -17.43 -0.09 -0.25 16 8 N -0.92 -25.06 10.90 55.49 0.61 -24.46 16 9 Si 0.91 20.98 29.57 -169.99 -5.03 15.95 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.16 3.40 5.51 -2.05 -0.01 3.39 16 14 C -0.12 -1.91 3.77 -88.06 -0.33 -2.24 16 15 H 0.08 1.36 7.94 -51.93 -0.41 0.95 16 16 C 0.10 1.26 4.89 -3.27 -0.02 1.25 16 17 N -0.61 -9.06 3.32 -172.92 -0.57 -9.63 16 18 C 0.60 9.61 7.86 -12.53 -0.10 9.51 16 19 O -0.55 -10.63 17.13 5.27 0.09 -10.54 16 20 C -0.22 -2.89 6.06 -105.02 -0.64 -3.53 16 21 C 0.07 0.63 10.24 -16.50 -0.17 0.46 16 22 N -0.53 -3.57 5.91 -9.30 -0.05 -3.62 16 23 H 0.42 1.08 8.14 -40.82 -0.33 0.75 16 24 C -0.08 -0.77 6.99 -82.40 -0.58 -1.34 16 25 C 0.60 5.92 8.06 -12.79 -0.10 5.82 16 26 N -0.86 -4.19 8.87 30.29 0.27 -3.92 16 27 O -0.53 -7.53 17.69 5.22 0.09 -7.44 16 28 C -0.04 -0.49 10.38 -39.10 -0.41 -0.89 16 29 C 0.12 1.82 6.24 -3.27 -0.02 1.80 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 34 H 0.03 0.53 7.17 -51.93 -0.37 0.16 16 35 H 0.25 6.75 8.31 -40.82 -0.34 6.42 16 36 H 0.02 0.53 7.18 -51.93 -0.37 0.16 16 37 H 0.09 2.11 6.46 -51.93 -0.34 1.78 16 38 H 0.07 0.79 5.37 -51.93 -0.28 0.51 16 39 H 0.07 0.96 6.99 -51.93 -0.36 0.60 16 40 H 0.20 1.40 4.95 -52.49 -0.26 1.15 16 41 H 0.40 0.66 7.91 -40.82 -0.32 0.34 16 42 H 0.41 1.54 8.93 -40.82 -0.36 1.18 16 43 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 44 H 0.08 1.19 7.56 -51.93 -0.39 0.80 16 45 H 0.07 1.06 7.11 -51.93 -0.37 0.69 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -35.17 362.17 -8.01 -43.18 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.82 Total: 1.91 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -2.48 Total: 7.55 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.32 Total: -56.07 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.18 Total: -17.99 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.17 -8.01 -43.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092278075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.073 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds