Wall clock time and date at job start Tue Mar 31 2020 16:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.54455 * 112.30065 * 2 1 4 4 N 1.48335 * 104.32077 * 97.55367 * 3 2 1 5 5 C 1.36941 * 128.19643 * 221.80915 * 4 3 2 6 6 H 1.08002 * 119.99958 * 15.63798 * 5 4 3 7 7 C 1.38812 * 119.99711 * 195.63793 * 5 4 3 8 8 N 1.31623 * 119.99975 * 10.54117 * 7 5 4 9 9 Si 1.86801 * 119.99968 * 190.26863 * 7 5 4 10 10 H 1.48500 * 109.47177 * 84.98358 * 9 7 5 11 11 H 1.48498 * 109.47248 * 204.98612 * 9 7 5 12 12 H 1.48499 * 109.46943 * 324.98626 * 9 7 5 13 13 C 1.48330 * 103.60065 * 42.07086 * 4 3 2 14 14 C 1.54873 * 104.11640 * 317.89500 * 13 4 3 15 15 H 1.08999 * 112.91727 * 262.97332 * 14 13 4 16 16 C 1.53746 * 108.85902 * 137.56600 * 14 13 4 17 17 N 1.47197 * 106.42656 * 229.56621 * 16 14 13 18 18 C 1.34776 * 126.70662 * 211.40086 * 17 16 14 19 19 O 1.21609 * 120.00149 * 174.28714 * 18 17 16 20 20 C 1.47393 * 119.99908 * 354.29344 * 18 17 16 21 21 C 1.38215 * 126.46067 * 352.50414 * 20 18 17 22 22 N 1.34261 * 108.39649 * 179.86508 * 21 20 18 23 23 H 0.96995 * 125.39191 * 180.17591 * 22 21 20 24 24 C 1.37785 * 109.21327 * 0.40807 * 22 21 20 25 25 C 1.46817 * 125.84773 * 179.71273 * 24 22 21 26 26 N 1.34775 * 119.99713 * 0.03884 * 25 24 22 27 27 O 1.21670 * 119.99682 * 180.02562 * 25 24 22 28 28 C 1.36351 * 108.30036 * 359.74655 * 24 22 21 29 29 C 1.47202 * 106.59418 * 31.37251 * 17 16 14 30 30 H 1.08999 * 109.47012 * 61.01225 * 1 2 3 31 31 H 1.08998 * 109.47128 * 181.01140 * 1 2 3 32 32 H 1.09000 * 109.47178 * 301.01134 * 1 2 3 33 33 H 1.09000 * 110.45689 * 338.84582 * 3 2 1 34 34 H 1.08994 * 110.57684 * 216.32187 * 3 2 1 35 35 H 0.97003 * 119.99729 * 179.72382 * 8 7 5 36 36 H 1.08998 * 110.46252 * 76.64211 * 13 4 3 37 37 H 1.09004 * 110.45737 * 199.22074 * 13 4 3 38 38 H 1.08998 * 110.06453 * 110.33423 * 16 14 13 39 39 H 1.08997 * 110.10990 * 348.83106 * 16 14 13 40 40 H 1.07999 * 125.80188 * 0.03034 * 21 20 18 41 41 H 0.97002 * 120.00347 * 359.97438 * 26 25 24 42 42 H 0.97005 * 119.99545 * 180.02562 * 26 25 24 43 43 H 1.08000 * 126.49161 * 180.02562 * 28 24 22 44 44 H 1.08999 * 110.06170 * 209.38746 * 29 17 16 45 45 H 1.08997 * 110.11184 * 87.89044 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1161 1.4290 0.0000 4 7 2.4302 1.6968 1.4248 5 6 2.2222 2.8486 2.1358 6 1 1.5608 3.6099 1.7491 7 6 2.8615 3.0375 3.3533 8 7 3.8196 2.2165 3.7280 9 14 2.3671 4.4615 4.4567 10 1 1.2050 4.0616 5.2902 11 1 3.5065 4.8241 5.3373 12 1 1.9969 5.6309 3.6196 13 6 3.0287 0.4238 1.8952 14 6 2.1338 -0.6708 1.2631 15 1 1.3672 -1.0385 1.9451 16 6 3.0310 -1.8002 0.7309 17 7 2.5950 -2.0624 -0.6503 18 6 2.6296 -3.2454 -1.2951 19 8 2.1414 -3.3479 -2.4042 20 6 3.2590 -4.4149 -0.6560 21 6 3.9762 -4.4185 0.5255 22 7 4.3815 -5.6746 0.7714 23 1 4.9021 -5.9567 1.5397 24 6 3.9455 -6.4986 -0.2432 25 6 4.1902 -7.9427 -0.3432 26 7 4.8981 -8.5741 0.6142 27 8 3.7537 -8.5695 -1.2903 28 6 3.2485 -5.7428 -1.1389 29 6 2.1130 -0.7803 -1.1896 30 1 -0.3633 0.4980 -0.8989 31 1 -0.3633 -1.0275 0.0181 32 1 -0.3633 0.5295 0.8808 33 1 1.3795 2.1429 -0.3686 34 1 3.0221 1.4715 -0.6044 35 1 4.2690 2.3510 4.5770 36 1 4.0553 0.3315 1.5409 37 1 2.9934 0.3653 2.9831 38 1 2.9050 -2.6959 1.3391 39 1 4.0746 -1.4857 0.7403 40 1 4.1743 -3.5576 1.1469 41 1 5.2463 -8.0743 1.3692 42 1 5.0601 -9.5282 0.5480 43 1 2.7772 -6.0929 -2.0453 44 1 1.3392 -0.9562 -1.9368 45 1 2.9402 -0.2251 -1.6317 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092278075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:15 Heat of formation + Delta-G solvation = -11.414555 kcal Electronic energy + Delta-G solvation = -28628.770224 eV Core-core repulsion = 24646.851658 eV Total energy + Delta-G solvation = -3981.918566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.71372 -41.35183 -40.01075 -39.29435 -36.53071 -34.91495 -34.42610 -32.70815 -32.25796 -31.42100 -30.64537 -27.98913 -27.40054 -26.66668 -24.60445 -24.27490 -22.77598 -22.17033 -21.30115 -20.51172 -20.08101 -19.22030 -18.55573 -17.86420 -17.77835 -16.98657 -16.61313 -16.56567 -16.25361 -16.20057 -15.84670 -15.41410 -15.15083 -14.99318 -14.75347 -14.56661 -14.48347 -14.06743 -13.75817 -13.56405 -13.50754 -13.16036 -13.10090 -12.86167 -12.67458 -12.49978 -12.20683 -11.87445 -11.72495 -11.57405 -11.45373 -11.37101 -11.31070 -10.97715 -10.84658 -10.64805 -10.25465 -9.65800 -9.44928 -8.80011 -7.84987 -5.18297 0.32632 0.71870 1.51148 1.51986 1.59353 1.86007 2.03305 2.14105 2.48203 2.50563 2.53981 3.34292 3.45233 3.52352 3.77431 3.89642 3.96598 3.98590 4.04235 4.16022 4.26967 4.30169 4.38670 4.60669 4.63736 4.74026 4.78346 4.81959 4.86515 4.98262 5.02847 5.08435 5.18233 5.27330 5.29944 5.44479 5.46519 5.49035 5.52343 5.65331 5.78447 5.78516 6.22928 6.26823 6.42218 6.60665 7.09716 7.16799 7.20995 7.75547 8.55588 9.27885 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.002696 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.035247 B =10384.121066 C =11506.155634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 C 0.134 3.866 4 N -0.617 5.617 5 C -0.233 4.233 6 H 0.074 0.926 7 C -0.056 4.056 8 N -0.940 5.940 9 Si 0.970 3.030 10 H -0.286 1.286 11 H -0.295 1.295 12 H -0.275 1.275 13 C 0.170 3.830 14 C -0.106 4.106 15 H 0.089 0.911 16 C 0.101 3.899 17 N -0.608 5.608 18 C 0.600 3.400 19 O -0.594 6.594 20 C -0.255 4.255 21 C 0.100 3.900 22 N -0.497 5.497 23 H 0.445 0.555 24 C -0.065 4.065 25 C 0.596 3.404 26 N -0.828 5.828 27 O -0.580 6.580 28 C -0.069 4.069 29 C 0.122 3.878 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.028 0.972 35 H 0.249 0.751 36 H 0.015 0.985 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.223 0.777 41 H 0.415 0.585 42 H 0.418 0.582 43 H 0.134 0.866 44 H 0.072 0.928 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 -17.781 0.104 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.079 4.079 3 C 0.008 3.992 4 N -0.341 5.341 5 C -0.362 4.362 6 H 0.091 0.909 7 C -0.250 4.250 8 N -0.588 5.588 9 Si 0.799 3.201 10 H -0.213 1.213 11 H -0.222 1.222 12 H -0.200 1.200 13 C 0.044 3.956 14 C -0.127 4.127 15 H 0.107 0.893 16 C -0.021 4.021 17 N -0.340 5.340 18 C 0.393 3.607 19 O -0.477 6.477 20 C -0.264 4.264 21 C -0.044 4.044 22 N -0.094 5.094 23 H 0.288 0.712 24 C -0.177 4.177 25 C 0.382 3.618 26 N -0.392 5.392 27 O -0.459 6.459 28 C -0.096 4.096 29 C -0.001 4.001 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.045 0.955 35 H 0.058 0.942 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.239 0.761 41 H 0.246 0.754 42 H 0.251 0.749 43 H 0.152 0.848 44 H 0.091 0.909 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.279 -18.152 -0.846 18.465 hybrid contribution 0.267 0.860 1.020 1.361 sum 3.546 -17.292 0.175 17.653 Atomic orbital electron populations 1.21521 0.92444 1.01354 1.01821 1.22226 0.96375 0.95399 0.93926 1.22005 0.96819 0.93941 0.86389 1.45324 1.71981 1.10612 1.06169 1.19259 1.20446 0.95453 1.01000 0.90852 1.25528 0.97521 1.01314 1.00665 1.70023 1.25605 1.40572 1.22608 0.85235 0.76751 0.79379 0.78771 1.21301 1.22186 1.20018 1.21689 0.92204 0.83007 0.98709 1.23166 0.97985 0.95115 0.96451 0.89311 1.22681 0.98864 0.99084 0.81433 1.48382 1.62758 1.07621 1.15201 1.17389 0.78039 0.81279 0.83978 1.90735 1.50052 1.84703 1.22181 1.19444 1.12645 0.93501 1.00836 1.23521 0.95778 0.88751 0.96352 1.41638 1.41142 1.06413 1.20169 0.71228 1.19784 1.11605 0.91356 0.94911 1.17044 0.77627 0.84834 0.82289 1.43454 1.55982 1.14248 1.25531 1.90893 1.53347 1.67064 1.34609 1.21031 0.98190 0.91505 0.98831 1.22070 0.98861 0.83216 0.95993 0.91794 0.92466 0.93193 0.93179 0.95460 0.94163 0.96673 0.92281 0.87215 0.89646 0.76143 0.75356 0.74907 0.84839 0.90924 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.31 8.61 71.98 0.62 -2.69 16 2 C -0.08 -2.41 1.08 -50.67 -0.05 -2.46 16 3 C 0.13 5.11 6.37 86.52 0.55 5.66 16 4 N -0.62 -28.94 3.37 -686.09 -2.31 -31.25 16 5 C -0.23 -12.22 10.37 84.03 0.87 -11.34 16 6 H 0.07 3.78 7.85 -2.91 -0.02 3.75 16 7 C -0.06 -2.98 5.39 84.86 0.46 -2.52 16 8 N -0.94 -51.83 10.90 21.65 0.24 -51.59 16 9 Si 0.97 43.24 29.57 68.60 2.03 45.27 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.30 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 13 C 0.17 7.04 5.51 86.67 0.48 7.52 16 14 C -0.11 -3.30 3.77 -9.14 -0.03 -3.33 16 15 H 0.09 2.70 7.94 -2.39 -0.02 2.68 16 16 C 0.10 2.39 4.89 86.50 0.42 2.81 16 17 N -0.61 -17.04 3.32 -819.26 -2.72 -19.76 16 18 C 0.60 18.76 7.86 86.65 0.68 19.45 16 19 O -0.59 -23.55 17.13 -4.06 -0.07 -23.62 16 20 C -0.25 -6.22 6.06 -20.12 -0.12 -6.34 16 21 C 0.10 1.43 10.24 84.32 0.86 2.29 16 22 N -0.50 -4.71 5.91 -183.34 -1.08 -5.79 16 23 H 0.44 -0.11 8.14 -92.71 -0.75 -0.87 16 24 C -0.06 -1.17 6.99 40.01 0.28 -0.89 16 25 C 0.60 10.81 8.06 86.49 0.70 11.51 16 26 N -0.83 -5.46 8.87 -176.30 -1.56 -7.02 16 27 O -0.58 -16.50 17.69 -4.25 -0.08 -16.58 16 28 C -0.07 -1.77 10.38 22.58 0.23 -1.54 16 29 C 0.12 3.62 6.24 86.50 0.54 4.16 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.87 7.91 -2.39 -0.02 1.85 16 34 H 0.03 1.05 7.17 -2.39 -0.02 1.03 16 35 H 0.25 13.39 8.31 -92.71 -0.77 12.62 16 36 H 0.02 0.66 7.18 -2.39 -0.02 0.64 16 37 H 0.06 2.81 6.46 -2.38 -0.02 2.80 16 38 H 0.11 1.84 5.37 -2.39 -0.01 1.83 16 39 H 0.09 1.91 6.99 -2.39 -0.02 1.90 16 40 H 0.22 2.03 4.95 -2.91 -0.01 2.01 16 41 H 0.42 -0.46 7.91 -92.71 -0.73 -1.19 16 42 H 0.42 1.91 8.93 -92.70 -0.83 1.08 16 43 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 44 H 0.07 2.24 7.56 -2.39 -0.02 2.22 16 45 H 0.07 2.07 7.11 -2.39 -0.02 2.05 16 Total: -1.00 -80.19 362.17 -0.31 -80.50 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -1.24 Total: 7.56 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 6.49 Total: 22.29 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -7.44 Total: -115.42 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.14 Total: -40.20 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -80.19 -0.31 -80.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092278075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.086 kcal (2) G-P(sol) polarization free energy of solvation -80.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds