Wall clock time and date at job start Tue Mar 31 2020 16:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48504 * 109.46958 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.46925 * 239.99535 * 3 2 1 6 6 H 1.48504 * 109.46927 * 119.99753 * 3 2 1 7 7 C 1.38805 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99749 * 154.41166 * 7 2 1 9 9 N 1.36939 * 120.00653 * 334.41092 * 7 2 1 10 10 C 1.50232 * 130.83486 * 341.19032 * 9 7 2 11 11 H 1.09003 * 115.86281 * 359.68293 * 10 9 7 12 12 C 1.56858 * 100.58710 * 234.62555 * 10 9 7 13 13 C 1.54854 * 103.35767 * 326.66231 * 12 10 9 14 14 C 1.50232 * 130.84020 * 161.52653 * 9 7 2 15 15 H 1.09003 * 115.86070 * 359.61207 * 14 9 7 16 16 C 1.55846 * 101.05306 * 233.93438 * 14 9 7 17 17 H 1.09004 * 110.62227 * 85.54767 * 16 14 9 18 18 N 1.46499 * 110.62841 * 208.57156 * 16 14 9 19 19 C 1.34775 * 119.99894 * 274.02596 * 18 16 14 20 20 O 1.21564 * 120.00037 * 0.02562 * 19 18 16 21 21 C 1.47721 * 119.99592 * 179.97438 * 19 18 16 22 22 C 1.41289 * 125.94876 * 180.02562 * 21 19 18 23 23 C 1.34865 * 107.70871 * 179.97438 * 22 21 19 24 24 N 1.36400 * 107.91670 * 0.09555 * 23 22 21 25 25 N 1.32121 * 125.95600 * 359.69205 * 21 19 18 26 26 C 1.46723 * 123.62252 * 179.77663 * 24 23 22 27 27 C 1.53537 * 107.95675 * 343.05191 * 26 24 23 28 28 C 1.53227 * 109.29739 * 47.29287 * 27 26 24 29 29 O 1.36028 * 128.63846 * 180.20349 * 23 22 21 30 30 C 1.55484 * 103.32321 * 326.97806 * 16 14 9 31 31 H 0.97000 * 120.00478 * 181.61239 * 1 2 3 32 32 H 1.08997 * 110.43360 * 208.30689 * 12 10 9 33 33 H 1.09004 * 110.89691 * 85.23049 * 12 10 9 34 34 H 1.09001 * 110.62454 * 241.78390 * 13 12 10 35 35 H 1.08992 * 110.62911 * 118.76294 * 13 12 10 36 36 H 0.97000 * 119.99633 * 94.02493 * 18 16 14 37 37 H 1.07999 * 126.15273 * 359.97438 * 22 21 19 38 38 H 1.09000 * 109.76738 * 102.66192 * 26 24 23 39 39 H 1.08995 * 109.76293 * 223.43822 * 26 24 23 40 40 H 1.08999 * 109.50068 * 167.24179 * 27 26 24 41 41 H 1.09000 * 109.49899 * 287.34872 * 27 26 24 42 42 H 1.08999 * 109.50809 * 55.33973 * 28 27 26 43 43 H 1.08993 * 109.50564 * 175.42067 * 28 27 26 44 44 H 1.08997 * 110.60672 * 241.57926 * 30 16 14 45 45 H 1.09003 * 110.89205 * 118.55040 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6963 -1.2124 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2021 0.0005 8 1 3.0107 -1.2482 -0.4034 9 7 1.4262 -2.3297 0.5132 10 6 0.2583 -2.4949 1.4437 11 1 -0.2142 -1.5727 1.7820 12 6 0.9099 -3.3684 2.5718 13 6 1.9279 -4.2456 1.8022 14 6 1.7604 -3.7821 0.3237 15 1 2.6035 -3.9941 -0.3339 16 6 0.3849 -4.3467 -0.1432 17 1 0.2672 -4.2289 -1.2205 18 7 0.2469 -5.7534 0.2417 19 6 0.7341 -6.7221 -0.5588 20 8 1.2885 -6.4284 -1.6000 21 6 0.5954 -8.1405 -0.1703 22 6 1.0575 -9.2521 -0.9100 23 6 0.7385 -10.3657 -0.2193 24 7 0.0938 -9.9826 0.9200 25 7 0.0233 -8.5905 0.9323 26 6 -0.4114 -10.9258 1.9240 27 6 -0.4741 -12.3169 1.2773 28 6 0.8423 -12.5941 0.5437 29 8 0.9858 -11.6642 -0.5402 30 6 -0.6425 -3.4662 0.6228 31 1 -0.4851 -0.8397 0.0236 32 1 0.1560 -3.9895 3.0554 33 1 1.4194 -2.7414 3.3036 34 1 1.6787 -5.3018 1.9040 35 1 2.9420 -4.0537 2.1522 36 1 -0.1951 -5.9877 1.0728 37 1 1.5734 -9.2166 -1.8581 38 1 0.2619 -10.9478 2.7809 39 1 -1.4081 -10.6234 2.2451 40 1 -0.6259 -13.0708 2.0497 41 1 -1.3004 -12.3512 0.5673 42 1 1.6762 -12.4775 1.2359 43 1 0.8337 -13.6113 0.1524 44 1 -1.2523 -4.0784 1.2872 45 1 -1.2728 -2.9109 -0.0718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095737020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:23 Heat of formation + Delta-G solvation = 63.111874 kcal Electronic energy + Delta-G solvation = -28834.645872 eV Core-core repulsion = 24855.959015 eV Total energy + Delta-G solvation = -3978.686857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.05844 -40.01852 -38.96645 -37.98958 -35.09610 -34.02225 -32.49176 -31.30704 -29.72077 -29.33759 -28.94761 -27.78907 -26.67935 -24.40485 -23.78107 -22.85040 -21.38563 -20.38260 -20.12117 -19.55797 -18.73367 -18.42994 -17.49871 -17.04031 -16.45011 -16.02227 -15.68081 -15.40934 -15.23614 -14.93271 -14.74796 -14.42878 -13.93838 -13.87814 -13.64252 -13.52915 -12.95486 -12.81570 -12.31143 -12.16702 -11.88739 -11.82430 -11.71590 -11.65049 -11.24642 -11.06045 -10.97308 -10.71916 -10.51174 -10.17249 -10.05614 -9.95856 -9.80599 -9.51206 -9.41283 -9.36902 -8.68931 -8.61495 -8.39647 -6.91380 -6.13838 -3.08799 1.22846 1.81693 2.02051 2.58635 3.40081 3.52029 3.53013 3.56643 3.64756 3.74075 3.85081 4.21456 4.25658 4.54351 4.59503 4.64460 4.79128 4.89094 5.06741 5.13754 5.15967 5.25110 5.35760 5.43903 5.66035 5.67382 5.72067 5.78353 5.83835 5.96534 6.02664 6.16100 6.18653 6.22524 6.41917 6.52060 6.61059 6.72247 6.78912 6.87097 6.91543 7.06294 7.15382 7.20882 7.64406 7.83232 8.42304 8.47171 8.99049 9.82018 10.51496 11.29171 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.002506 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.874243 B =11171.034841 C =11489.524259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.029 4.029 3 Si 1.074 2.926 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.321 4.321 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.142 3.858 11 H 0.105 0.895 12 C -0.132 4.132 13 C -0.128 4.128 14 C 0.129 3.871 15 H 0.088 0.912 16 C 0.127 3.873 17 H 0.088 0.912 18 N -0.696 5.696 19 C 0.594 3.406 20 O -0.524 6.524 21 C 0.060 3.940 22 C -0.226 4.226 23 C 0.260 3.740 24 N -0.396 5.396 25 N -0.246 5.246 26 C 0.128 3.872 27 C -0.175 4.175 28 C 0.049 3.951 29 O -0.286 6.286 30 C -0.134 4.134 31 H 0.270 0.730 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.401 0.599 37 H 0.166 0.834 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.120 0.880 44 H 0.060 0.940 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 -26.995 6.643 27.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.231 4.231 3 Si 0.904 3.096 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.449 4.449 8 H 0.084 0.916 9 N -0.315 5.315 10 C 0.035 3.965 11 H 0.123 0.877 12 C -0.172 4.172 13 C -0.168 4.168 14 C 0.021 3.979 15 H 0.106 0.894 16 C 0.022 3.978 17 H 0.106 0.894 18 N -0.347 5.347 19 C 0.376 3.624 20 O -0.397 6.397 21 C -0.108 4.108 22 C -0.256 4.256 23 C 0.094 3.906 24 N -0.194 5.194 25 N -0.076 5.076 26 C 0.008 3.992 27 C -0.214 4.214 28 C -0.027 4.027 29 O -0.193 6.193 30 C -0.174 4.174 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.236 0.764 37 H 0.184 0.816 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.138 0.862 44 H 0.078 0.922 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.865 -24.790 6.654 25.827 hybrid contribution 0.252 -2.405 -0.017 2.418 sum -2.613 -27.195 6.638 28.115 Atomic orbital electron populations 1.70801 1.06379 1.30424 1.48826 1.25824 0.96637 1.01049 0.99543 0.83356 0.74580 0.75532 0.76140 1.21114 1.22008 1.22180 1.19728 0.98081 0.86511 1.40582 0.91595 1.46542 1.35193 0.99511 1.50234 1.23153 0.88936 0.95168 0.89260 0.87700 1.23115 0.97933 0.98128 0.98008 1.22887 0.98814 0.97664 0.97436 1.23241 0.94563 0.85920 0.94195 0.89354 1.22823 0.98293 0.76915 0.99794 0.89414 1.46122 1.58077 1.06606 1.23864 1.16865 0.79420 0.82201 0.83930 1.90822 1.42759 1.82128 1.24023 1.22155 1.00144 0.95264 0.93209 1.20238 1.13419 0.86757 1.05154 1.19426 0.96412 0.85692 0.89046 1.49282 1.46924 1.05028 1.18119 1.77577 1.23254 0.86464 1.20308 1.21961 1.01989 0.85645 0.89653 1.22649 0.99535 0.96612 1.02574 1.23119 0.97110 0.93270 0.89171 1.86666 1.85813 1.11714 1.35111 1.23289 0.96957 0.97820 0.99350 0.91850 0.93161 0.92479 0.92688 0.92760 0.76364 0.81645 0.89092 0.87778 0.87066 0.89171 0.90849 0.86188 0.92190 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.71 12.90 55.49 0.72 -27.00 16 2 C -0.03 -0.84 5.29 -17.43 -0.09 -0.94 16 3 Si 1.07 25.77 29.99 -169.99 -5.10 20.67 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.32 -9.18 10.39 -15.06 -0.16 -9.34 16 8 H 0.07 1.90 7.95 -52.49 -0.42 1.48 16 9 N -0.59 -15.02 2.79 -145.21 -0.41 -15.42 16 10 C 0.14 3.15 3.81 -62.24 -0.24 2.91 16 11 H 0.11 2.58 6.80 -51.93 -0.35 2.23 16 12 C -0.13 -2.48 6.50 -23.67 -0.15 -2.64 16 13 C -0.13 -2.41 6.34 -24.23 -0.15 -2.57 16 14 C 0.13 2.82 5.29 -62.80 -0.33 2.49 16 15 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 16 C 0.13 2.50 3.10 -65.09 -0.20 2.30 16 17 H 0.09 1.94 7.71 -51.93 -0.40 1.54 16 18 N -0.70 -11.46 3.66 -52.05 -0.19 -11.66 16 19 C 0.59 10.35 7.82 -12.39 -0.10 10.26 16 20 O -0.52 -10.85 16.63 5.31 0.09 -10.76 16 21 C 0.06 0.91 7.10 -82.71 -0.59 0.32 16 22 C -0.23 -3.16 10.58 -39.62 -0.42 -3.58 16 23 C 0.26 3.07 7.57 -16.72 -0.13 2.94 16 24 N -0.40 -4.29 4.08 -60.93 -0.25 -4.54 16 25 N -0.25 -3.33 12.32 33.43 0.41 -2.91 16 26 C 0.13 0.74 7.41 -3.64 -0.03 0.71 16 27 C -0.18 -0.58 6.16 -26.34 -0.16 -0.74 16 28 C 0.05 0.23 7.00 37.27 0.26 0.49 16 29 O -0.29 -2.73 10.65 -19.83 -0.21 -2.95 16 30 C -0.13 -2.59 6.11 -23.89 -0.15 -2.74 16 31 H 0.27 7.93 5.57 -40.82 -0.23 7.70 16 32 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.92 6.56 -51.93 -0.34 0.58 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.40 5.82 7.75 -40.82 -0.32 5.50 16 37 H 0.17 2.23 8.06 -52.49 -0.42 1.80 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.11 0.03 8.14 -51.93 -0.42 -0.40 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.06 0.97 7.41 -51.93 -0.38 0.58 16 45 H 0.07 1.51 7.65 -51.93 -0.40 1.11 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -35.03 361.43 -8.39 -43.42 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.27 Total: 5.82 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -2.63 Total: -0.13 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.28 Total: -61.53 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.12 Total: -13.70 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.10 Total: 20.67 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.03 -8.39 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095737020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.535 kcal (2) G-P(sol) polarization free energy of solvation -35.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds