Wall clock time and date at job start Tue Mar 31 2020 16:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99939 * 2 1 4 4 H 1.48504 * 109.46958 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.46925 * 239.99535 * 3 2 1 6 6 H 1.48504 * 109.46927 * 119.99753 * 3 2 1 7 7 C 1.38805 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99749 * 154.41166 * 7 2 1 9 9 N 1.36939 * 120.00653 * 334.41092 * 7 2 1 10 10 C 1.50232 * 130.83486 * 341.19032 * 9 7 2 11 11 H 1.09003 * 115.86281 * 359.68293 * 10 9 7 12 12 C 1.56858 * 100.58710 * 234.62555 * 10 9 7 13 13 C 1.54854 * 103.35767 * 326.66231 * 12 10 9 14 14 C 1.50232 * 130.84020 * 161.52653 * 9 7 2 15 15 H 1.09003 * 115.86070 * 359.61207 * 14 9 7 16 16 C 1.55846 * 101.05306 * 233.93438 * 14 9 7 17 17 H 1.09004 * 110.62227 * 85.54767 * 16 14 9 18 18 N 1.46499 * 110.62841 * 208.57156 * 16 14 9 19 19 C 1.34775 * 119.99894 * 274.02596 * 18 16 14 20 20 O 1.21564 * 120.00037 * 0.02562 * 19 18 16 21 21 C 1.47721 * 119.99592 * 179.97438 * 19 18 16 22 22 C 1.41289 * 125.94876 * 180.02562 * 21 19 18 23 23 C 1.34865 * 107.70871 * 179.97438 * 22 21 19 24 24 N 1.36400 * 107.91670 * 0.09555 * 23 22 21 25 25 N 1.32121 * 125.95600 * 359.69205 * 21 19 18 26 26 C 1.46723 * 123.62252 * 179.77663 * 24 23 22 27 27 C 1.53537 * 107.95675 * 343.05191 * 26 24 23 28 28 C 1.53227 * 109.29739 * 47.29287 * 27 26 24 29 29 O 1.36028 * 128.63846 * 180.20349 * 23 22 21 30 30 C 1.55484 * 103.32321 * 326.97806 * 16 14 9 31 31 H 0.97000 * 120.00478 * 181.61239 * 1 2 3 32 32 H 1.08997 * 110.43360 * 208.30689 * 12 10 9 33 33 H 1.09004 * 110.89691 * 85.23049 * 12 10 9 34 34 H 1.09001 * 110.62454 * 241.78390 * 13 12 10 35 35 H 1.08992 * 110.62911 * 118.76294 * 13 12 10 36 36 H 0.97000 * 119.99633 * 94.02493 * 18 16 14 37 37 H 1.07999 * 126.15273 * 359.97438 * 22 21 19 38 38 H 1.09000 * 109.76738 * 102.66192 * 26 24 23 39 39 H 1.08995 * 109.76293 * 223.43822 * 26 24 23 40 40 H 1.08999 * 109.50068 * 167.24179 * 27 26 24 41 41 H 1.09000 * 109.49899 * 287.34872 * 27 26 24 42 42 H 1.08999 * 109.50809 * 55.33973 * 28 27 26 43 43 H 1.08993 * 109.50564 * 175.42067 * 28 27 26 44 44 H 1.08997 * 110.60672 * 241.57926 * 30 16 14 45 45 H 1.09003 * 110.89205 * 118.55040 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6963 -1.2124 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2021 0.0005 8 1 3.0107 -1.2482 -0.4034 9 7 1.4262 -2.3297 0.5132 10 6 0.2583 -2.4949 1.4437 11 1 -0.2142 -1.5727 1.7820 12 6 0.9099 -3.3684 2.5718 13 6 1.9279 -4.2456 1.8022 14 6 1.7604 -3.7821 0.3237 15 1 2.6035 -3.9941 -0.3339 16 6 0.3849 -4.3467 -0.1432 17 1 0.2672 -4.2289 -1.2205 18 7 0.2469 -5.7534 0.2417 19 6 0.7341 -6.7221 -0.5588 20 8 1.2885 -6.4284 -1.6000 21 6 0.5954 -8.1405 -0.1703 22 6 1.0575 -9.2521 -0.9100 23 6 0.7385 -10.3657 -0.2193 24 7 0.0938 -9.9826 0.9200 25 7 0.0233 -8.5905 0.9323 26 6 -0.4114 -10.9258 1.9240 27 6 -0.4741 -12.3169 1.2773 28 6 0.8423 -12.5941 0.5437 29 8 0.9858 -11.6642 -0.5402 30 6 -0.6425 -3.4662 0.6228 31 1 -0.4851 -0.8397 0.0236 32 1 0.1560 -3.9895 3.0554 33 1 1.4194 -2.7414 3.3036 34 1 1.6787 -5.3018 1.9040 35 1 2.9420 -4.0537 2.1522 36 1 -0.1951 -5.9877 1.0728 37 1 1.5734 -9.2166 -1.8581 38 1 0.2619 -10.9478 2.7809 39 1 -1.4081 -10.6234 2.2451 40 1 -0.6259 -13.0708 2.0497 41 1 -1.3004 -12.3512 0.5673 42 1 1.6762 -12.4775 1.2359 43 1 0.8337 -13.6113 0.1524 44 1 -1.2523 -4.0784 1.2872 45 1 -1.2728 -2.9109 -0.0718 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095737020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:22 Heat of formation + Delta-G solvation = 38.067448 kcal Electronic energy + Delta-G solvation = -28835.731880 eV Core-core repulsion = 24855.959015 eV Total energy + Delta-G solvation = -3979.772865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.93185 -41.54942 -40.09118 -39.20136 -35.69517 -35.66831 -34.41607 -32.15256 -30.91954 -30.84019 -30.58973 -29.35757 -27.42181 -26.02921 -25.02370 -23.83229 -22.91627 -21.75055 -21.23674 -20.77584 -20.28581 -19.63638 -19.28973 -17.90330 -17.27613 -17.14563 -16.88603 -16.58497 -16.41731 -16.09908 -15.81368 -15.61345 -15.49318 -15.32689 -14.99554 -14.78161 -14.36348 -13.96276 -13.57550 -13.46780 -13.36162 -12.94033 -12.64895 -12.60878 -12.56383 -12.44620 -12.38567 -12.12549 -11.92165 -11.88840 -11.83215 -11.64661 -11.45752 -11.30758 -11.06523 -10.55664 -10.34739 -10.07106 -9.61024 -8.94523 -8.38863 -5.28205 0.15705 0.99784 1.04594 1.57309 1.65484 1.76127 1.84575 2.22115 2.24518 2.63307 2.99902 3.20691 3.35302 3.51816 3.57240 3.72960 3.90669 3.95082 3.97894 4.00664 4.17203 4.25232 4.30337 4.31610 4.43041 4.44042 4.53934 4.55228 4.58792 4.62843 4.69097 4.82977 4.90006 4.92864 4.97809 5.03175 5.05512 5.19707 5.24050 5.29150 5.43808 5.54231 5.64776 6.12031 6.16720 6.30550 6.52370 6.84147 7.07837 7.67205 8.44279 9.07094 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.002506 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.874243 B =11171.034841 C =11489.524259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.079 4.079 3 Si 1.122 2.878 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.333 4.333 8 H 0.051 0.949 9 N -0.622 5.622 10 C 0.133 3.867 11 H 0.076 0.924 12 C -0.119 4.119 13 C -0.114 4.114 14 C 0.118 3.882 15 H 0.064 0.936 16 C 0.145 3.855 17 H 0.055 0.945 18 N -0.681 5.681 19 C 0.596 3.404 20 O -0.566 6.566 21 C 0.041 3.959 22 C -0.256 4.256 23 C 0.273 3.727 24 N -0.383 5.383 25 N -0.247 5.247 26 C 0.111 3.889 27 C -0.164 4.164 28 C 0.034 3.966 29 O -0.299 6.299 30 C -0.120 4.120 31 H 0.262 0.738 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.416 0.584 37 H 0.157 0.843 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.153 0.847 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.149 0.851 44 H 0.103 0.897 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.348 -30.323 9.338 31.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.274 4.274 3 Si 0.947 3.053 4 H -0.214 1.214 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.462 4.462 8 H 0.069 0.931 9 N -0.346 5.346 10 C 0.027 3.973 11 H 0.094 0.906 12 C -0.158 4.158 13 C -0.153 4.153 14 C 0.011 3.989 15 H 0.082 0.918 16 C 0.038 3.962 17 H 0.073 0.927 18 N -0.333 5.333 19 C 0.381 3.619 20 O -0.442 6.442 21 C -0.125 4.125 22 C -0.286 4.286 23 C 0.106 3.894 24 N -0.182 5.182 25 N -0.079 5.079 26 C -0.007 4.007 27 C -0.203 4.203 28 C -0.040 4.040 29 O -0.206 6.206 30 C -0.160 4.160 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.254 0.746 37 H 0.175 0.825 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.170 0.830 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.167 0.833 44 H 0.121 0.879 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.561 -28.197 9.400 29.935 hybrid contribution 0.459 -1.637 -0.828 1.891 sum -3.102 -29.834 8.572 31.195 Atomic orbital electron populations 1.70884 1.07141 1.30090 1.51161 1.27139 0.96797 1.04131 0.99366 0.82728 0.73688 0.71839 0.77069 1.21438 1.20652 1.20673 1.19909 0.97713 0.88258 1.40298 0.93105 1.46763 1.36291 1.00058 1.51443 1.23228 0.88465 0.95231 0.90406 0.90589 1.23038 0.98401 0.97738 0.96584 1.22772 0.98885 0.99062 0.94562 1.23341 0.94794 0.84687 0.96120 0.91790 1.22297 0.97185 0.78758 0.97980 0.92703 1.45811 1.58080 1.04990 1.24369 1.17176 0.78254 0.83334 0.83170 1.90798 1.44524 1.83056 1.25832 1.21629 1.02417 0.93837 0.94632 1.20267 1.14969 0.87724 1.05687 1.19274 0.95200 0.86334 0.88610 1.49694 1.45483 1.04482 1.18504 1.77458 1.22802 0.88313 1.19350 1.22578 1.03073 0.85699 0.89370 1.22685 0.98304 0.95965 1.03304 1.23617 0.98374 0.93326 0.88660 1.86686 1.85486 1.10977 1.37461 1.23151 0.96403 0.97331 0.99105 0.92679 0.88927 0.93014 0.89985 0.93166 0.74586 0.82529 0.87015 0.86419 0.82960 0.89749 0.89862 0.83327 0.87875 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.85 12.90 21.65 0.28 -58.57 16 2 C -0.08 -4.63 5.29 84.86 0.45 -4.19 16 3 Si 1.12 53.11 29.99 68.60 2.06 55.17 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.33 -19.78 10.39 84.03 0.87 -18.91 16 8 H 0.05 3.07 7.95 -2.91 -0.02 3.05 16 9 N -0.62 -32.53 2.79 -613.34 -1.71 -34.24 16 10 C 0.13 5.91 3.81 46.60 0.18 6.09 16 11 H 0.08 3.83 6.80 -2.39 -0.02 3.82 16 12 C -0.12 -4.19 6.50 32.58 0.21 -3.98 16 13 C -0.11 -4.11 6.34 32.21 0.20 -3.90 16 14 C 0.12 5.29 5.29 46.23 0.24 5.53 16 15 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 16 C 0.14 5.79 3.10 46.83 0.15 5.93 16 17 H 0.05 2.57 7.71 -2.38 -0.02 2.55 16 18 N -0.68 -21.95 3.66 -436.85 -1.60 -23.55 16 19 C 0.60 21.10 7.82 86.75 0.68 21.78 16 20 O -0.57 -24.61 16.63 -3.92 -0.07 -24.68 16 21 C 0.04 1.22 7.10 42.36 0.30 1.52 16 22 C -0.26 -7.23 10.58 22.25 0.24 -6.99 16 23 C 0.27 6.04 7.57 83.21 0.63 6.67 16 24 N -0.38 -7.28 4.08 -457.15 -1.87 -9.15 16 25 N -0.25 -6.20 12.32 -48.15 -0.59 -6.79 16 26 C 0.11 0.82 7.41 86.52 0.64 1.46 16 27 C -0.16 -0.34 6.16 30.85 0.19 -0.15 16 28 C 0.03 0.19 7.00 72.06 0.50 0.69 16 29 O -0.30 -5.08 10.65 -93.87 -1.00 -6.08 16 30 C -0.12 -4.61 6.11 32.43 0.20 -4.41 16 31 H 0.26 16.07 5.57 -92.71 -0.52 15.55 16 32 H 0.09 2.53 7.88 -2.39 -0.02 2.51 16 33 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 34 H 0.08 2.53 6.56 -2.39 -0.02 2.51 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.42 10.99 7.75 -92.71 -0.72 10.27 16 37 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.15 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.10 3.03 7.41 -2.39 -0.02 3.01 16 45 H 0.05 2.19 7.65 -2.39 -0.02 2.17 16 Total: -1.00 -81.63 361.43 1.74 -79.89 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.56 Total: 20.85 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 5.68 Total: 7.15 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -5.49 Total: -132.30 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -1.07 Total: -30.76 kcal Atomic # 14 Polarization: 53.11 SS G_CDS: 2.06 Total: 55.17 kcal Total: -81.63 1.74 -79.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095737020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.959 kcal (2) G-P(sol) polarization free energy of solvation -81.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds