Wall clock time and date at job start Tue Mar 31 2020 17:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.40467 * 119.77013 * 2 1 4 4 C 1.36601 * 118.31864 * 180.02562 * 3 2 1 5 5 C 1.41167 * 117.80673 * 0.02562 * 4 3 2 6 6 O 1.22061 * 120.34927 * 180.02562 * 5 4 3 7 7 N 1.34670 * 119.29742 * 359.97438 * 5 4 3 8 8 C 1.46504 * 119.16847 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47313 * 89.99715 * 8 7 5 10 10 O 1.21280 * 119.99729 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99730 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99448 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.68752 * 32.99806 * 12 11 9 14 14 C 1.54853 * 110.62753 * 155.98138 * 12 11 9 15 15 C 1.55841 * 103.58596 * 118.56661 * 14 12 11 16 16 H 1.09006 * 115.55964 * 159.49220 * 15 14 12 17 17 C 1.55844 * 105.06577 * 288.09583 * 15 14 12 18 18 C 1.54859 * 103.44555 * 71.82689 * 17 15 14 19 19 C 1.55848 * 103.44111 * 359.97438 * 18 17 15 20 20 H 1.09002 * 115.55743 * 158.81052 * 19 18 17 21 21 N 1.50235 * 101.05397 * 32.86358 * 15 14 12 22 22 C 1.36932 * 130.84358 * 125.98251 * 21 15 14 23 23 H 1.07997 * 119.99948 * 180.02562 * 22 21 15 24 24 C 1.38808 * 119.99604 * 0.02976 * 22 21 15 25 25 N 1.31622 * 120.00316 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99760 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47275 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46949 * 119.99978 * 26 24 22 29 29 H 1.48500 * 109.47234 * 239.99553 * 26 24 22 30 30 N 1.28384 * 121.66220 * 0.27872 * 7 5 4 31 31 H 1.08998 * 109.47456 * 89.99438 * 1 2 3 32 32 H 1.08997 * 109.47256 * 209.99959 * 1 2 3 33 33 H 1.09004 * 109.47213 * 329.99906 * 1 2 3 34 34 H 1.07995 * 120.84095 * 0.02562 * 3 2 1 35 35 H 1.08001 * 121.10247 * 179.97438 * 4 3 2 36 36 H 1.09004 * 109.46725 * 330.00138 * 8 7 5 37 37 H 1.08997 * 109.46932 * 210.00093 * 8 7 5 38 38 H 0.96997 * 120.00546 * 359.97438 * 11 9 8 39 39 H 1.09003 * 110.62517 * 359.97438 * 14 12 11 40 40 H 1.08999 * 110.63024 * 237.13974 * 14 12 11 41 41 H 1.09003 * 110.62942 * 190.31199 * 17 15 14 42 42 H 1.08995 * 110.62740 * 313.33813 * 17 15 14 43 43 H 1.09002 * 110.62524 * 118.48472 * 18 17 15 44 44 H 1.08991 * 110.62529 * 241.35349 * 18 17 15 45 45 H 0.96998 * 119.99730 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2044 1.2193 0.0000 4 6 3.5699 1.1847 -0.0005 5 6 4.1966 -0.0803 -0.0016 6 8 5.4143 -0.1653 -0.0017 7 7 3.4368 -1.1921 -0.0016 8 6 4.0901 -2.5034 -0.0021 9 6 4.3148 -2.9534 1.4185 10 8 3.9634 -2.2483 2.3406 11 7 4.9054 -4.1397 1.6642 12 6 5.1233 -4.5773 3.0452 13 1 4.3241 -4.2181 3.6936 14 6 5.2325 -6.1203 3.1178 15 6 6.6695 -6.3600 3.6711 16 1 6.8419 -7.3358 4.1253 17 6 7.6233 -5.9873 2.4963 18 6 7.5184 -4.4439 2.4231 19 6 6.5151 -4.0945 3.5633 20 1 6.5599 -3.0695 3.9314 21 7 6.8360 -5.1657 4.5673 22 6 7.1746 -5.0800 5.8913 23 1 7.2448 -4.1140 6.3692 24 6 7.4275 -6.2346 6.6191 25 7 7.3415 -7.4118 6.0368 26 14 7.8901 -6.1176 8.4252 27 1 7.9176 -4.6914 8.8378 28 1 6.8879 -6.8492 9.2412 29 1 9.2317 -6.7194 8.6326 30 7 2.1544 -1.1320 -0.0058 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6744 2.1603 0.0004 35 1 4.1511 2.0950 -0.0010 36 1 5.0486 -2.4315 -0.5163 37 1 3.4554 -3.2254 -0.5158 38 1 5.1855 -4.7041 0.9267 39 1 5.1240 -6.5599 2.1263 40 1 4.4856 -6.5264 3.8000 41 1 8.6455 -6.2924 2.7199 42 1 7.2812 -6.4399 1.5656 43 1 8.4887 -3.9839 2.6106 44 1 7.1270 -4.1312 1.4552 45 1 7.5179 -8.2186 6.5455 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096394596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:44 Heat of formation + Delta-G solvation = 51.267143 kcal Electronic energy + Delta-G solvation = -28982.679921 eV Core-core repulsion = 25003.479438 eV Total energy + Delta-G solvation = -3979.200483 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.25230 -39.97194 -38.38233 -37.96027 -35.41958 -34.00564 -32.36363 -32.18910 -30.55129 -29.26079 -29.01345 -27.89077 -26.79671 -24.50699 -24.02203 -23.52585 -21.46784 -20.79511 -19.55976 -18.67753 -18.42821 -17.73172 -17.52017 -16.90657 -16.59305 -15.93180 -15.31108 -15.19427 -14.84785 -14.69956 -14.32819 -13.99851 -13.92131 -13.82244 -13.57989 -13.14423 -12.81757 -12.56817 -12.47984 -12.31150 -12.11857 -11.76040 -11.50687 -11.38446 -11.04515 -10.92727 -10.89354 -10.84189 -10.77229 -10.21660 -10.07244 -9.89752 -9.88301 -9.75499 -9.38913 -9.25788 -8.93618 -8.58088 -8.53959 -6.91323 -5.72745 -3.10415 0.33011 1.45196 1.92911 2.69039 3.10891 3.39723 3.45147 3.47343 3.49536 3.85442 4.29684 4.45196 4.47329 4.63002 4.73791 4.83148 4.96414 5.16806 5.20188 5.24162 5.36891 5.38287 5.43790 5.55131 5.58967 5.78304 5.81332 5.84569 5.94347 5.97216 6.06586 6.11508 6.28388 6.33507 6.52614 6.60113 6.64726 6.80715 6.94514 7.00166 7.26375 7.46271 7.53148 7.66167 7.79974 8.00821 8.15293 8.35233 9.10980 9.73112 10.53463 11.37207 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.002763 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.991592 B =10132.569324 C =10348.906359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.054 3.946 3 C -0.066 4.066 4 C -0.184 4.184 5 C 0.482 3.518 6 O -0.529 6.529 7 N -0.326 5.326 8 C 0.092 3.908 9 C 0.501 3.499 10 O -0.531 6.531 11 N -0.705 5.705 12 C 0.129 3.871 13 H 0.084 0.916 14 C -0.141 4.141 15 C 0.156 3.844 16 H 0.153 0.847 17 C -0.137 4.137 18 C -0.130 4.130 19 C 0.128 3.872 20 H 0.084 0.916 21 N -0.589 5.589 22 C -0.209 4.209 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.923 5.923 26 Si 0.916 3.084 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 N -0.215 5.215 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.163 0.837 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.397 0.603 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.944 11.278 -17.985 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.089 4.089 4 C -0.214 4.214 5 C 0.280 3.720 6 O -0.407 6.407 7 N -0.145 5.145 8 C -0.033 4.033 9 C 0.285 3.715 10 O -0.407 6.407 11 N -0.357 5.357 12 C 0.023 3.977 13 H 0.102 0.898 14 C -0.181 4.181 15 C 0.049 3.951 16 H 0.170 0.830 17 C -0.177 4.177 18 C -0.170 4.170 19 C 0.019 3.981 20 H 0.102 0.898 21 N -0.310 5.310 22 C -0.337 4.337 23 H 0.097 0.903 24 C -0.208 4.208 25 N -0.572 5.572 26 Si 0.747 3.253 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 N -0.039 5.039 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.169 0.831 35 H 0.180 0.820 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.232 0.768 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.440 10.659 -16.979 23.594 hybrid contribution 0.674 0.689 0.562 1.116 sum -11.766 11.348 -16.418 23.168 Atomic orbital electron populations 1.20510 0.86350 1.04153 1.03324 1.21819 0.97969 0.87648 1.04258 1.22283 0.94453 0.99516 0.92693 1.22733 0.95497 0.97927 1.05267 1.18028 0.88483 0.85591 0.79888 1.91006 1.12234 1.86363 1.51088 1.46024 1.02196 1.08512 1.57756 1.21795 1.01080 0.82838 0.97582 1.20421 0.78397 0.82297 0.90430 1.90740 1.50667 1.53752 1.45564 1.46117 1.60142 1.19440 1.09952 1.22730 0.99423 0.95688 0.79852 0.89780 1.23304 1.02321 0.92772 0.99654 1.23705 0.88410 0.95882 0.87076 0.82979 1.23067 1.01196 0.94907 0.98520 1.22907 0.99384 0.96905 0.97800 1.23249 0.91824 0.93424 0.89573 0.89807 1.46483 1.78395 1.00384 1.05716 1.19116 1.38191 0.93194 0.83211 0.90283 1.24696 1.02593 0.95039 0.98432 1.69472 1.56129 0.96802 1.34786 0.85957 0.77674 0.77309 0.84343 1.20545 1.21771 1.21789 1.70669 0.94703 1.29254 1.09233 0.90243 0.90156 0.90039 0.83117 0.81971 0.84986 0.85433 0.76831 0.92640 0.91574 0.92600 0.93590 0.92974 0.93123 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.18 36.00 0.37 -0.08 16 2 C 0.05 0.49 6.88 -82.36 -0.57 -0.08 16 3 C -0.07 -0.52 9.84 -39.33 -0.39 -0.90 16 4 C -0.18 -1.96 10.13 -39.06 -0.40 -2.35 16 5 C 0.48 7.02 7.47 -15.20 -0.11 6.90 16 6 O -0.53 -9.42 16.65 4.86 0.08 -9.34 16 7 N -0.33 -4.35 2.71 -64.51 -0.17 -4.53 16 8 C 0.09 1.08 6.04 -5.19 -0.03 1.05 16 9 C 0.50 7.91 7.89 -10.98 -0.09 7.83 16 10 O -0.53 -10.89 16.09 5.56 0.09 -10.80 16 11 N -0.70 -10.41 3.73 -51.23 -0.19 -10.60 16 12 C 0.13 2.45 3.16 -65.26 -0.21 2.24 16 13 H 0.08 1.81 7.58 -51.93 -0.39 1.42 16 14 C -0.14 -2.65 6.19 -24.24 -0.15 -2.80 16 15 C 0.16 3.52 4.68 -62.80 -0.29 3.22 16 16 H 0.15 3.91 5.58 -51.93 -0.29 3.62 16 17 C -0.14 -2.66 6.44 -24.23 -0.16 -2.82 16 18 C -0.13 -2.48 6.32 -24.23 -0.15 -2.64 16 19 C 0.13 2.79 5.35 -62.60 -0.34 2.45 16 20 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 21 N -0.59 -14.93 2.99 -145.60 -0.43 -15.37 16 22 C -0.21 -5.87 10.59 -15.06 -0.16 -6.03 16 23 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.92 -26.33 10.48 55.49 0.58 -25.75 16 26 Si 0.92 22.31 29.55 -169.99 -5.02 17.29 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 N -0.21 -2.55 10.80 33.72 0.36 -2.18 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 34 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.13 1.40 7.37 -51.93 -0.38 1.02 16 37 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.40 4.54 7.93 -40.82 -0.32 4.22 16 39 H 0.06 0.86 7.39 -51.93 -0.38 0.48 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.74 7.82 -51.93 -0.41 0.33 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.82 6.42 -51.93 -0.33 0.49 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 368.40 15.07 5.55 5.55 Total: -1.00 -36.42 368.40 -8.20 -44.63 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.28 Total: 5.56 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -2.76 Total: 5.55 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.15 Total: -58.43 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.17 Total: -20.14 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.42 -8.20 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096394596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.894 kcal (2) G-P(sol) polarization free energy of solvation -36.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds