Wall clock time and date at job start Tue Mar 31 2020 17:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.40467 * 119.77013 * 2 1 4 4 C 1.36601 * 118.31864 * 180.02562 * 3 2 1 5 5 C 1.41167 * 117.80673 * 0.02562 * 4 3 2 6 6 O 1.22061 * 120.34927 * 180.02562 * 5 4 3 7 7 N 1.34670 * 119.29742 * 359.97438 * 5 4 3 8 8 C 1.46504 * 119.16847 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47313 * 89.99715 * 8 7 5 10 10 O 1.21280 * 119.99729 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99730 * 179.97438 * 9 8 7 12 12 C 1.46501 * 119.99448 * 180.02562 * 11 9 8 13 13 H 1.09001 * 110.68752 * 32.99806 * 12 11 9 14 14 C 1.54853 * 110.62753 * 155.98138 * 12 11 9 15 15 C 1.55841 * 103.58596 * 118.56661 * 14 12 11 16 16 H 1.09006 * 115.55964 * 159.49220 * 15 14 12 17 17 C 1.55844 * 105.06577 * 288.09583 * 15 14 12 18 18 C 1.54859 * 103.44555 * 71.82689 * 17 15 14 19 19 C 1.55848 * 103.44111 * 359.97438 * 18 17 15 20 20 H 1.09002 * 115.55743 * 158.81052 * 19 18 17 21 21 N 1.50235 * 101.05397 * 32.86358 * 15 14 12 22 22 C 1.36932 * 130.84358 * 125.98251 * 21 15 14 23 23 H 1.07997 * 119.99948 * 180.02562 * 22 21 15 24 24 C 1.38808 * 119.99604 * 0.02976 * 22 21 15 25 25 N 1.31622 * 120.00316 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99760 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47275 * 0.02562 * 26 24 22 28 28 H 1.48507 * 109.46949 * 119.99978 * 26 24 22 29 29 H 1.48500 * 109.47234 * 239.99553 * 26 24 22 30 30 N 1.28384 * 121.66220 * 0.27872 * 7 5 4 31 31 H 1.08998 * 109.47456 * 89.99438 * 1 2 3 32 32 H 1.08997 * 109.47256 * 209.99959 * 1 2 3 33 33 H 1.09004 * 109.47213 * 329.99906 * 1 2 3 34 34 H 1.07995 * 120.84095 * 0.02562 * 3 2 1 35 35 H 1.08001 * 121.10247 * 179.97438 * 4 3 2 36 36 H 1.09004 * 109.46725 * 330.00138 * 8 7 5 37 37 H 1.08997 * 109.46932 * 210.00093 * 8 7 5 38 38 H 0.96997 * 120.00546 * 359.97438 * 11 9 8 39 39 H 1.09003 * 110.62517 * 359.97438 * 14 12 11 40 40 H 1.08999 * 110.63024 * 237.13974 * 14 12 11 41 41 H 1.09003 * 110.62942 * 190.31199 * 17 15 14 42 42 H 1.08995 * 110.62740 * 313.33813 * 17 15 14 43 43 H 1.09002 * 110.62524 * 118.48472 * 18 17 15 44 44 H 1.08991 * 110.62529 * 241.35349 * 18 17 15 45 45 H 0.96998 * 119.99730 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2044 1.2193 0.0000 4 6 3.5699 1.1847 -0.0005 5 6 4.1966 -0.0803 -0.0016 6 8 5.4143 -0.1653 -0.0017 7 7 3.4368 -1.1921 -0.0016 8 6 4.0901 -2.5034 -0.0021 9 6 4.3148 -2.9534 1.4185 10 8 3.9634 -2.2483 2.3406 11 7 4.9054 -4.1397 1.6642 12 6 5.1233 -4.5773 3.0452 13 1 4.3241 -4.2181 3.6936 14 6 5.2325 -6.1203 3.1178 15 6 6.6695 -6.3600 3.6711 16 1 6.8419 -7.3358 4.1253 17 6 7.6233 -5.9873 2.4963 18 6 7.5184 -4.4439 2.4231 19 6 6.5151 -4.0945 3.5633 20 1 6.5599 -3.0695 3.9314 21 7 6.8360 -5.1657 4.5673 22 6 7.1746 -5.0800 5.8913 23 1 7.2448 -4.1140 6.3692 24 6 7.4275 -6.2346 6.6191 25 7 7.3415 -7.4118 6.0368 26 14 7.8901 -6.1176 8.4252 27 1 7.9176 -4.6914 8.8378 28 1 6.8879 -6.8492 9.2412 29 1 9.2317 -6.7194 8.6326 30 7 2.1544 -1.1320 -0.0058 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6744 2.1603 0.0004 35 1 4.1511 2.0950 -0.0010 36 1 5.0486 -2.4315 -0.5163 37 1 3.4554 -3.2254 -0.5158 38 1 5.1855 -4.7041 0.9267 39 1 5.1240 -6.5599 2.1263 40 1 4.4856 -6.5264 3.8000 41 1 8.6455 -6.2924 2.7199 42 1 7.2812 -6.4399 1.5656 43 1 8.4887 -3.9839 2.6106 44 1 7.1270 -4.1312 1.4552 45 1 7.5179 -8.2186 6.5455 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096394596.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:43 Heat of formation + Delta-G solvation = 25.451158 kcal Electronic energy + Delta-G solvation = -28983.799386 eV Core-core repulsion = 25003.479438 eV Total energy + Delta-G solvation = -3980.319948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.13113 -41.46793 -39.84348 -38.95535 -36.25354 -35.56527 -34.29178 -32.95794 -31.55949 -31.03849 -30.59351 -29.26867 -27.86520 -26.17757 -25.12334 -24.32335 -22.95356 -22.19130 -21.31993 -20.24615 -19.36602 -19.09163 -18.65962 -18.41526 -17.48613 -17.12516 -16.83300 -16.59491 -16.44280 -16.00116 -15.60348 -15.49538 -14.91102 -14.70007 -14.63638 -14.18281 -14.02885 -13.83291 -13.56821 -13.41598 -13.25771 -13.16307 -13.12701 -12.89894 -12.83208 -12.64954 -12.42052 -12.22048 -12.01999 -11.94238 -11.63877 -11.56558 -11.22357 -11.10171 -10.91733 -10.82558 -10.79083 -10.09703 -9.49183 -8.89979 -7.83580 -5.22845 -0.43772 0.62247 1.07177 1.42846 1.43729 1.46534 1.53916 2.03987 2.43168 2.50366 3.10963 3.29641 3.43446 3.61575 3.63527 3.85692 3.90465 3.99494 4.02535 4.09048 4.10299 4.14797 4.37283 4.41672 4.55450 4.57126 4.67307 4.70425 4.76722 4.77047 4.92392 4.92759 5.02167 5.04678 5.11521 5.15393 5.17640 5.27745 5.41938 5.43310 5.49449 5.70222 5.85609 6.22634 6.44413 6.54149 7.02319 7.14351 7.18638 7.64527 8.50971 9.23611 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.002763 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.991592 B =10132.569324 C =10348.906359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.060 3.940 3 C -0.040 4.040 4 C -0.210 4.210 5 C 0.461 3.539 6 O -0.583 6.583 7 N -0.335 5.335 8 C 0.096 3.904 9 C 0.500 3.500 10 O -0.584 6.584 11 N -0.689 5.689 12 C 0.149 3.851 13 H 0.051 0.949 14 C -0.124 4.124 15 C 0.140 3.860 16 H 0.122 0.878 17 C -0.125 4.125 18 C -0.117 4.117 19 C 0.116 3.884 20 H 0.055 0.945 21 N -0.618 5.618 22 C -0.228 4.228 23 H 0.066 0.934 24 C -0.060 4.060 25 N -0.941 5.941 26 Si 0.976 3.024 27 H -0.277 1.277 28 H -0.289 1.289 29 H -0.289 1.289 30 N -0.246 5.246 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.202 0.798 35 H 0.177 0.823 36 H 0.145 0.855 37 H 0.169 0.831 38 H 0.419 0.581 39 H 0.103 0.897 40 H 0.048 0.952 41 H 0.035 0.965 42 H 0.093 0.907 43 H 0.037 0.963 44 H 0.086 0.914 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.093 12.064 -20.599 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 C -0.063 4.063 4 C -0.240 4.240 5 C 0.262 3.738 6 O -0.465 6.465 7 N -0.153 5.153 8 C -0.028 4.028 9 C 0.286 3.714 10 O -0.463 6.463 11 N -0.342 5.342 12 C 0.042 3.958 13 H 0.070 0.930 14 C -0.163 4.163 15 C 0.035 3.965 16 H 0.139 0.861 17 C -0.164 4.164 18 C -0.157 4.157 19 C 0.008 3.992 20 H 0.074 0.926 21 N -0.340 5.340 22 C -0.357 4.357 23 H 0.084 0.916 24 C -0.253 4.253 25 N -0.591 5.591 26 Si 0.805 3.195 27 H -0.202 1.202 28 H -0.216 1.216 29 H -0.216 1.216 30 N -0.070 5.070 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.219 0.781 35 H 0.194 0.806 36 H 0.162 0.838 37 H 0.186 0.814 38 H 0.258 0.742 39 H 0.121 0.879 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.111 0.889 43 H 0.056 0.944 44 H 0.104 0.896 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.623 11.425 -19.665 27.039 hybrid contribution 1.175 0.553 1.363 1.883 sum -13.448 11.979 -18.302 25.677 Atomic orbital electron populations 1.20717 0.83378 1.05095 1.05080 1.22738 0.99841 0.87532 1.00971 1.22801 0.93313 1.01131 0.89057 1.22927 0.97042 0.96931 1.07056 1.18698 0.88254 0.87199 0.79637 1.90954 1.14129 1.87181 1.54282 1.46068 1.02802 1.08503 1.57889 1.21917 1.02809 0.83535 0.94509 1.21185 0.76957 0.81531 0.91771 1.90718 1.52724 1.55226 1.47674 1.45811 1.59872 1.19744 1.08760 1.22119 0.96481 0.95570 0.81645 0.93022 1.23127 0.99272 0.92407 1.01527 1.23653 0.91411 0.93801 0.87674 0.86101 1.22964 0.99379 0.94881 0.99148 1.22816 0.97939 0.96742 0.98159 1.23360 0.94407 0.91538 0.89912 0.92634 1.46735 1.79090 1.02587 1.05589 1.19299 1.38374 0.92928 0.85112 0.91567 1.25403 1.03122 0.94846 1.01974 1.69684 1.56756 0.96943 1.35693 0.85042 0.77159 0.77236 0.80071 1.20183 1.21596 1.21582 1.70765 0.93901 1.30793 1.11498 0.87906 0.91043 0.87271 0.78120 0.80557 0.83753 0.81363 0.74180 0.87911 0.93361 0.94585 0.88854 0.94378 0.89556 0.93998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.18 71.23 0.73 0.18 16 2 C 0.06 0.91 6.88 43.31 0.30 1.21 16 3 C -0.04 -0.49 9.84 22.43 0.22 -0.27 16 4 C -0.21 -4.20 10.13 22.61 0.23 -3.97 16 5 C 0.46 13.44 7.47 84.98 0.63 14.07 16 6 O -0.58 -21.39 16.65 -5.52 -0.09 -21.48 16 7 N -0.34 -8.64 2.71 -476.13 -1.29 -9.93 16 8 C 0.10 2.11 6.04 85.63 0.52 2.63 16 9 C 0.50 15.41 7.89 87.66 0.69 16.10 16 10 O -0.58 -24.51 16.09 -3.03 -0.05 -24.56 16 11 N -0.69 -19.09 3.73 -434.38 -1.62 -20.71 16 12 C 0.15 5.66 3.16 46.72 0.15 5.81 16 13 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 14 C -0.12 -4.53 6.19 32.21 0.20 -4.34 16 15 C 0.14 6.36 4.68 46.23 0.22 6.58 16 16 H 0.12 6.36 5.58 -2.38 -0.01 6.34 16 17 C -0.12 -4.63 6.44 32.21 0.21 -4.42 16 18 C -0.12 -4.36 6.32 32.21 0.20 -4.16 16 19 C 0.12 5.18 5.35 46.33 0.25 5.43 16 20 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 21 N -0.62 -32.46 2.99 -614.56 -1.84 -34.29 16 22 C -0.23 -13.38 10.59 84.03 0.89 -12.49 16 23 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 24 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 25 N -0.94 -55.22 10.48 21.65 0.23 -55.00 16 26 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 27 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 28 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 29 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 30 N -0.25 -5.42 10.80 -47.22 -0.51 -5.93 16 31 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.11 0.16 8.09 -2.38 -0.02 0.14 16 34 H 0.20 0.37 8.06 -2.91 -0.02 0.34 16 35 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 36 H 0.14 2.81 7.37 -2.39 -0.02 2.80 16 37 H 0.17 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.42 7.91 7.93 -92.71 -0.73 7.18 16 39 H 0.10 2.77 7.39 -2.39 -0.02 2.75 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 2.59 7.82 -2.39 -0.02 2.57 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.09 2.57 6.42 -2.39 -0.02 2.56 16 45 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -87.23 368.40 3.05 -84.18 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.29 Total: 19.17 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 5.90 Total: 19.34 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -5.03 Total: -125.85 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.14 Total: -46.04 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -87.23 3.05 -84.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096394596.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.635 kcal (2) G-P(sol) polarization free energy of solvation -87.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds