Wall clock time and date at job start Tue Mar 31 2020 16:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86793 * 120.00110 * 2 1 4 4 H 1.48499 * 109.47521 * 270.00111 * 3 2 1 5 5 H 1.48508 * 109.47105 * 30.00025 * 3 2 1 6 6 H 1.48498 * 109.47445 * 149.99762 * 3 2 1 7 7 C 1.38952 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00434 * 0.02562 * 7 2 1 9 9 N 1.37103 * 119.99863 * 180.02562 * 7 2 1 10 10 C 1.34770 * 120.00197 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99768 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00316 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47500 * 179.97438 * 12 10 9 14 14 C 1.50649 * 110.99877 * 81.91014 * 13 12 10 15 15 H 1.09003 * 115.87625 * 296.65306 * 14 13 12 16 16 C 1.55851 * 101.02919 * 170.95781 * 14 13 12 17 17 C 1.55858 * 103.03876 * 326.12375 * 16 14 13 18 18 C 1.50658 * 111.00007 * 189.99894 * 13 12 10 19 19 H 1.08999 * 115.87510 * 63.35246 * 18 13 12 20 20 C 1.55845 * 101.02643 * 297.64972 * 18 13 12 21 21 H 1.09005 * 110.61185 * 85.67759 * 20 18 13 22 22 N 1.46496 * 110.61047 * 208.49651 * 20 18 13 23 23 C 1.34773 * 120.00321 * 274.07008 * 22 20 18 24 24 O 1.21622 * 120.00146 * 0.02562 * 23 22 20 25 25 C 1.47267 * 120.00037 * 179.97438 * 23 22 20 26 26 C 1.46690 * 126.94406 * 359.96721 * 25 23 22 27 27 C 1.34485 * 106.33129 * 180.02562 * 26 25 23 28 28 N 1.36441 * 108.85903 * 359.97438 * 27 26 25 29 29 H 0.97001 * 124.84871 * 180.27388 * 28 27 26 30 30 C 1.34665 * 110.29684 * 0.02562 * 28 27 26 31 31 C 1.54831 * 103.52349 * 327.01160 * 20 18 13 32 32 H 0.97001 * 120.00283 * 359.97438 * 1 2 3 33 33 H 0.97005 * 119.99698 * 359.97438 * 9 7 2 34 34 H 1.09006 * 109.47243 * 59.99192 * 12 10 9 35 35 H 1.08997 * 109.47369 * 299.99859 * 12 10 9 36 36 H 1.09001 * 110.61269 * 85.50983 * 16 14 13 37 37 H 1.08996 * 110.61085 * 208.34175 * 16 14 13 38 38 H 1.09002 * 111.08930 * 242.09816 * 17 16 14 39 39 H 1.09000 * 110.05597 * 119.17617 * 17 16 14 40 40 H 0.97003 * 119.99508 * 94.07890 * 22 20 18 41 41 H 1.07997 * 126.82738 * 0.03157 * 26 25 23 42 42 H 1.08000 * 125.56498 * 180.02562 * 27 26 25 43 43 H 1.08006 * 125.79728 * 179.97438 * 30 28 27 44 44 H 1.09000 * 110.61435 * 118.50626 * 31 20 18 45 45 H 1.09009 * 110.61157 * 241.49139 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5606 -2.3706 0.0011 13 7 6.0503 -3.7556 0.0017 14 6 6.0437 -4.3312 -1.3905 15 1 5.0656 -4.4224 -1.8629 16 6 6.8087 -5.6699 -1.1633 17 6 7.8401 -5.3016 -0.0544 18 6 7.5362 -3.8028 0.2459 19 1 7.8713 -3.4291 1.2135 20 6 8.0673 -3.0260 -0.9964 21 1 8.0680 -1.9526 -0.8062 22 7 9.4111 -3.4852 -1.3560 23 6 10.4907 -2.9450 -0.7569 24 8 10.3494 -2.0764 0.0826 25 6 11.8416 -3.4071 -1.1181 26 6 12.1867 -4.4393 -2.1016 27 6 13.5285 -4.5296 -2.1000 28 7 14.0295 -3.6374 -1.1975 29 1 14.9727 -3.5066 -1.0124 30 6 13.0278 -2.9607 -0.6042 31 6 7.0524 -3.3852 -2.1091 32 1 -0.4850 0.8400 0.0004 33 1 3.8648 -0.3633 0.0007 34 1 5.9240 -1.8567 0.8910 35 1 5.9240 -1.8569 -0.8889 36 1 6.1249 -6.4512 -0.8317 37 1 7.3263 -5.9751 -2.0727 38 1 8.8621 -5.4213 -0.4139 39 1 7.6701 -5.9127 0.8321 40 1 9.5238 -4.1781 -2.0254 41 1 11.4998 -5.0125 -2.7065 42 1 14.1138 -5.1983 -2.7137 43 1 13.1418 -2.1956 0.1496 44 1 6.5474 -2.4898 -2.4715 45 1 7.5492 -3.9050 -2.9284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109316292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:20 Heat of formation + Delta-G solvation = 18.950335 kcal Electronic energy + Delta-G solvation = -28568.037527 eV Core-core repulsion = 24587.435681 eV Total energy + Delta-G solvation = -3980.601845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54053 -41.05959 -38.78021 -37.87921 -34.33090 -33.82316 -31.96069 -31.49122 -31.45461 -29.78740 -29.53164 -28.43914 -26.56104 -23.95510 -23.46560 -22.00925 -21.05670 -20.39417 -19.78057 -19.41082 -19.20126 -19.01114 -18.07438 -16.58114 -16.42628 -15.72995 -15.67670 -15.45711 -14.92184 -14.71821 -14.55146 -14.22300 -13.98667 -13.77033 -13.42324 -13.27817 -12.94865 -12.76619 -12.72287 -12.44392 -12.33202 -12.09951 -11.91549 -11.72188 -11.50471 -11.35355 -11.07537 -10.81762 -10.65567 -10.52201 -10.16750 -10.00627 -9.90409 -9.47805 -9.34291 -9.19381 -8.76785 -8.51043 -8.09740 -8.01478 -6.23770 -3.74567 1.50368 2.04281 2.73441 3.09901 3.13078 3.20806 3.24910 3.40786 3.84426 3.96042 4.17324 4.48658 4.53394 4.62668 4.67690 4.75624 4.84652 5.03251 5.04951 5.12688 5.15330 5.25805 5.31127 5.39911 5.44801 5.45256 5.59965 5.62069 5.66528 5.84299 5.88173 5.94065 5.99108 6.03837 6.21268 6.23943 6.30848 6.36992 6.42678 6.51879 6.86889 7.00255 7.16312 7.48978 7.66713 8.22771 8.24151 8.69198 9.03755 9.51303 9.94058 10.89596 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020239 B = 0.002640 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.130564 B =10605.107010 C =11545.519317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.040 3.960 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.119 0.881 9 N -0.595 5.595 10 C 0.458 3.542 11 O -0.558 6.558 12 C 0.017 3.983 13 N -0.460 5.460 14 C 0.056 3.944 15 H 0.122 0.878 16 C -0.112 4.112 17 C -0.112 4.112 18 C 0.036 3.964 19 H 0.115 0.885 20 C 0.114 3.886 21 H 0.092 0.908 22 N -0.710 5.710 23 C 0.589 3.411 24 O -0.551 6.551 25 C -0.233 4.233 26 C -0.171 4.171 27 C -0.018 4.018 28 N -0.555 5.555 29 H 0.418 0.582 30 C 0.075 3.925 31 C -0.163 4.163 32 H 0.272 0.728 33 H 0.370 0.630 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.399 0.601 41 H 0.145 0.855 42 H 0.169 0.831 43 H 0.177 0.823 44 H 0.080 0.920 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.842 -8.276 -6.399 32.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.163 4.163 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.137 0.863 9 N -0.236 5.236 10 C 0.243 3.757 11 O -0.439 6.439 12 C -0.115 4.115 13 N -0.182 5.182 14 C -0.053 4.053 15 H 0.139 0.861 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.073 4.073 19 H 0.133 0.867 20 C 0.008 3.992 21 H 0.110 0.890 22 N -0.361 5.361 23 C 0.378 3.622 24 O -0.430 6.430 25 C -0.243 4.243 26 C -0.195 4.195 27 C -0.145 4.145 28 N -0.149 5.149 29 H 0.254 0.746 30 C -0.062 4.062 31 C -0.202 4.202 32 H 0.083 0.917 33 H 0.202 0.798 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.234 0.766 41 H 0.162 0.838 42 H 0.186 0.814 43 H 0.194 0.806 44 H 0.099 0.901 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 29.835 -8.559 -5.348 31.496 hybrid contribution 1.524 1.772 -0.865 2.492 sum 31.360 -6.787 -6.212 32.681 Atomic orbital electron populations 1.69622 1.05606 1.27356 1.49896 1.25021 0.95479 0.97907 0.97847 0.86691 0.79889 0.84140 0.78818 1.19729 1.20248 1.19419 1.19417 0.79277 0.96542 1.47758 0.86334 1.42226 1.07471 1.06162 1.67692 1.19620 0.87963 0.84479 0.83604 1.90554 1.69383 1.30896 1.53067 1.22211 0.95848 0.91273 1.02216 1.67500 1.11570 1.16308 1.22806 1.24458 0.98051 0.93937 0.88843 0.86055 1.22752 0.97349 0.96985 0.97949 1.22691 0.98315 0.94750 0.99232 1.24863 0.88455 0.96261 0.97767 0.86746 1.22784 0.81098 0.99974 0.95370 0.88978 1.45806 1.05303 1.41701 1.43307 1.17394 0.83451 0.80879 0.80492 1.90786 1.86891 1.31974 1.33343 1.20400 0.92601 1.05355 1.05975 1.22061 0.94598 1.01069 1.01768 1.21792 0.94936 0.99007 0.98814 1.41666 1.09224 1.31270 1.32769 0.74555 1.21870 0.86525 0.98455 0.99307 1.23556 0.97278 1.01552 0.97858 0.91730 0.79793 0.89286 0.92221 0.90653 0.91880 0.91205 0.91301 0.76628 0.83777 0.81410 0.80569 0.90116 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.36 13.96 55.50 0.77 -25.58 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 20.00 27.74 -169.99 -4.71 15.28 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -5.65 6.52 56.52 0.37 -5.29 16 7 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 9 N -0.60 -14.66 5.09 -10.97 -0.06 -14.71 16 10 C 0.46 10.76 7.72 -10.99 -0.08 10.67 16 11 O -0.56 -15.33 15.58 5.54 0.09 -15.24 16 12 C 0.02 0.30 4.82 -4.98 -0.02 0.27 16 13 N -0.46 -7.62 5.08 -207.00 -1.05 -8.67 16 14 C 0.06 0.79 4.51 -62.56 -0.28 0.51 16 15 H 0.12 2.01 7.95 -51.93 -0.41 1.59 16 16 C -0.11 -1.30 6.53 -23.68 -0.15 -1.45 16 17 C -0.11 -1.29 6.34 -23.68 -0.15 -1.44 16 18 C 0.04 0.50 4.80 -62.55 -0.30 0.20 16 19 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 20 C 0.11 1.39 2.27 -65.45 -0.15 1.24 16 21 H 0.09 1.29 7.19 -51.93 -0.37 0.91 16 22 N -0.71 -7.26 3.63 -52.53 -0.19 -7.45 16 23 C 0.59 7.16 7.80 -12.59 -0.10 7.06 16 24 O -0.55 -8.75 16.64 5.26 0.09 -8.66 16 25 C -0.23 -2.23 6.29 -103.35 -0.65 -2.88 16 26 C -0.17 -1.19 10.56 -37.50 -0.40 -1.58 16 27 C -0.02 -0.09 11.89 -16.83 -0.20 -0.29 16 28 N -0.55 -2.60 5.90 -12.85 -0.08 -2.68 16 29 H 0.42 0.56 8.96 -40.82 -0.37 0.19 16 30 C 0.08 0.57 11.69 -16.84 -0.20 0.38 16 31 C -0.16 -1.89 5.41 -24.25 -0.13 -2.02 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.37 8.08 5.76 -40.82 -0.24 7.85 16 34 H 0.09 1.49 8.09 -51.93 -0.42 1.06 16 35 H 0.06 0.94 5.10 -51.93 -0.26 0.67 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.57 7.86 -51.93 -0.41 0.16 16 38 H 0.07 0.69 6.48 -51.93 -0.34 0.35 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.40 3.10 7.14 -40.82 -0.29 2.81 16 41 H 0.14 0.74 7.69 -52.49 -0.40 0.33 16 42 H 0.17 0.35 8.06 -52.49 -0.42 -0.07 16 43 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.08 0.99 6.95 -51.93 -0.36 0.63 16 45 H 0.08 0.72 7.38 -51.92 -0.38 0.34 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -37.22 363.44 -8.65 -45.87 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.93 Total: 13.55 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -3.06 Total: 2.82 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.60 Total: -59.09 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.71 Total: 15.28 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.22 -8.65 -45.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109316292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.821 kcal (2) G-P(sol) polarization free energy of solvation -37.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds