Wall clock time and date at job start Tue Mar 31 2020 16:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86793 * 120.00110 * 2 1 4 4 H 1.48499 * 109.47521 * 270.00111 * 3 2 1 5 5 H 1.48508 * 109.47105 * 30.00025 * 3 2 1 6 6 H 1.48498 * 109.47445 * 149.99762 * 3 2 1 7 7 C 1.38952 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00434 * 0.02562 * 7 2 1 9 9 N 1.37103 * 119.99863 * 180.02562 * 7 2 1 10 10 C 1.34770 * 120.00197 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99768 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00316 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47500 * 179.97438 * 12 10 9 14 14 C 1.50649 * 110.99877 * 81.91014 * 13 12 10 15 15 H 1.09003 * 115.87625 * 296.65306 * 14 13 12 16 16 C 1.55851 * 101.02919 * 170.95781 * 14 13 12 17 17 C 1.55858 * 103.03876 * 326.12375 * 16 14 13 18 18 C 1.50658 * 111.00007 * 189.99894 * 13 12 10 19 19 H 1.08999 * 115.87510 * 63.35246 * 18 13 12 20 20 C 1.55845 * 101.02643 * 297.64972 * 18 13 12 21 21 H 1.09005 * 110.61185 * 85.67759 * 20 18 13 22 22 N 1.46496 * 110.61047 * 208.49651 * 20 18 13 23 23 C 1.34773 * 120.00321 * 274.07008 * 22 20 18 24 24 O 1.21622 * 120.00146 * 0.02562 * 23 22 20 25 25 C 1.47267 * 120.00037 * 179.97438 * 23 22 20 26 26 C 1.46690 * 126.94406 * 359.96721 * 25 23 22 27 27 C 1.34485 * 106.33129 * 180.02562 * 26 25 23 28 28 N 1.36441 * 108.85903 * 359.97438 * 27 26 25 29 29 H 0.97001 * 124.84871 * 180.27388 * 28 27 26 30 30 C 1.34665 * 110.29684 * 0.02562 * 28 27 26 31 31 C 1.54831 * 103.52349 * 327.01160 * 20 18 13 32 32 H 0.97001 * 120.00283 * 359.97438 * 1 2 3 33 33 H 0.97005 * 119.99698 * 359.97438 * 9 7 2 34 34 H 1.09006 * 109.47243 * 59.99192 * 12 10 9 35 35 H 1.08997 * 109.47369 * 299.99859 * 12 10 9 36 36 H 1.09001 * 110.61269 * 85.50983 * 16 14 13 37 37 H 1.08996 * 110.61085 * 208.34175 * 16 14 13 38 38 H 1.09002 * 111.08930 * 242.09816 * 17 16 14 39 39 H 1.09000 * 110.05597 * 119.17617 * 17 16 14 40 40 H 0.97003 * 119.99508 * 94.07890 * 22 20 18 41 41 H 1.07997 * 126.82738 * 0.03157 * 26 25 23 42 42 H 1.08000 * 125.56498 * 180.02562 * 27 26 25 43 43 H 1.08006 * 125.79728 * 179.97438 * 30 28 27 44 44 H 1.09000 * 110.61435 * 118.50626 * 31 20 18 45 45 H 1.09009 * 110.61157 * 241.49139 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5606 -2.3706 0.0011 13 7 6.0503 -3.7556 0.0017 14 6 6.0437 -4.3312 -1.3905 15 1 5.0656 -4.4224 -1.8629 16 6 6.8087 -5.6699 -1.1633 17 6 7.8401 -5.3016 -0.0544 18 6 7.5362 -3.8028 0.2459 19 1 7.8713 -3.4291 1.2135 20 6 8.0673 -3.0260 -0.9964 21 1 8.0680 -1.9526 -0.8062 22 7 9.4111 -3.4852 -1.3560 23 6 10.4907 -2.9450 -0.7569 24 8 10.3494 -2.0764 0.0826 25 6 11.8416 -3.4071 -1.1181 26 6 12.1867 -4.4393 -2.1016 27 6 13.5285 -4.5296 -2.1000 28 7 14.0295 -3.6374 -1.1975 29 1 14.9727 -3.5066 -1.0124 30 6 13.0278 -2.9607 -0.6042 31 6 7.0524 -3.3852 -2.1091 32 1 -0.4850 0.8400 0.0004 33 1 3.8648 -0.3633 0.0007 34 1 5.9240 -1.8567 0.8910 35 1 5.9240 -1.8569 -0.8889 36 1 6.1249 -6.4512 -0.8317 37 1 7.3263 -5.9751 -2.0727 38 1 8.8621 -5.4213 -0.4139 39 1 7.6701 -5.9127 0.8321 40 1 9.5238 -4.1781 -2.0254 41 1 11.4998 -5.0125 -2.7065 42 1 14.1138 -5.1983 -2.7137 43 1 13.1418 -2.1956 0.1496 44 1 6.5474 -2.4898 -2.4715 45 1 7.5492 -3.9050 -2.9284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109316292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:19 Heat of formation + Delta-G solvation = -11.131564 kcal Electronic energy + Delta-G solvation = -28569.341976 eV Core-core repulsion = 24587.435681 eV Total energy + Delta-G solvation = -3981.906294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.37054 -41.80167 -40.07502 -39.44376 -36.01378 -35.23312 -33.78526 -33.03514 -32.05049 -30.77463 -30.06335 -29.40930 -28.17461 -25.78400 -24.25961 -22.91779 -21.72549 -21.49502 -21.09224 -20.56667 -20.41546 -19.93057 -19.56132 -17.85814 -17.42212 -17.12426 -16.88542 -16.55974 -16.53390 -15.96097 -15.62028 -15.22250 -14.90786 -14.73141 -14.57256 -14.47582 -14.31736 -14.07995 -13.84354 -13.71864 -13.38548 -13.26010 -13.01730 -12.94878 -12.70209 -12.59846 -12.51047 -12.42017 -11.99631 -11.86320 -11.69002 -11.49691 -11.15210 -10.94445 -10.48973 -10.24114 -10.21848 -9.73072 -9.33460 -9.18015 -8.41306 -6.01397 0.84179 1.29844 1.33521 1.42596 1.62888 1.96072 2.16178 2.21929 2.56092 2.63823 2.69530 3.14193 3.18044 3.53745 3.60293 3.84348 4.02054 4.07401 4.13474 4.18671 4.22639 4.27603 4.37101 4.39714 4.43833 4.46619 4.55268 4.58434 4.73078 4.82405 4.95585 5.02639 5.05357 5.17720 5.24349 5.25695 5.29730 5.52502 5.54721 5.77350 5.83853 5.88191 6.00377 6.02118 6.60210 6.65666 6.77487 6.88731 7.40237 7.40945 7.97638 8.76393 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020239 B = 0.002640 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.130564 B =10605.107010 C =11545.519317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.237 1.237 7 C -0.325 4.325 8 H 0.057 0.943 9 N -0.595 5.595 10 C 0.458 3.542 11 O -0.605 6.605 12 C 0.031 3.969 13 N -0.492 5.492 14 C 0.044 3.956 15 H 0.090 0.910 16 C -0.104 4.104 17 C -0.103 4.103 18 C 0.035 3.965 19 H 0.103 0.897 20 C 0.125 3.875 21 H 0.075 0.925 22 N -0.696 5.696 23 C 0.586 3.414 24 O -0.598 6.598 25 C -0.267 4.267 26 C -0.185 4.185 27 C -0.007 4.007 28 N -0.540 5.540 29 H 0.435 0.565 30 C 0.069 3.931 31 C -0.150 4.150 32 H 0.279 0.721 33 H 0.387 0.613 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.414 0.586 41 H 0.162 0.838 42 H 0.203 0.797 43 H 0.179 0.821 44 H 0.075 0.925 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.394 -7.845 -7.970 37.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.782 3.218 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.161 1.161 7 C -0.454 4.454 8 H 0.075 0.925 9 N -0.237 5.237 10 C 0.245 3.755 11 O -0.488 6.488 12 C -0.101 4.101 13 N -0.215 5.215 14 C -0.064 4.064 15 H 0.108 0.892 16 C -0.141 4.141 17 C -0.141 4.141 18 C -0.074 4.074 19 H 0.121 0.879 20 C 0.017 3.983 21 H 0.093 0.907 22 N -0.347 5.347 23 C 0.376 3.624 24 O -0.481 6.481 25 C -0.277 4.277 26 C -0.209 4.209 27 C -0.135 4.135 28 N -0.135 5.135 29 H 0.274 0.726 30 C -0.070 4.070 31 C -0.188 4.188 32 H 0.088 0.912 33 H 0.222 0.778 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.252 0.748 41 H 0.179 0.821 42 H 0.220 0.780 43 H 0.196 0.804 44 H 0.093 0.907 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 34.443 -8.170 -6.949 36.075 hybrid contribution 0.097 1.481 -0.367 1.529 sum 34.540 -6.689 -7.316 35.934 Atomic orbital electron populations 1.69796 1.07973 1.29159 1.50528 1.26058 0.96465 1.02510 0.96245 0.85408 0.79344 0.77070 0.80006 1.17932 1.19829 1.16107 1.18993 0.81331 0.94931 1.50128 0.92533 1.42067 1.05902 1.07484 1.68266 1.20747 0.90437 0.83315 0.80980 1.90527 1.71173 1.32633 1.54471 1.22062 0.90919 0.93084 1.04039 1.67469 1.13853 1.15383 1.24825 1.24430 0.97750 0.96217 0.88035 0.89184 1.22741 0.96911 0.94992 0.99506 1.22673 0.99442 0.92918 0.99048 1.24850 0.86477 0.98079 0.98006 0.87934 1.22501 0.82157 0.98798 0.94820 0.90662 1.45616 1.04112 1.41729 1.43255 1.17843 0.84669 0.80148 0.79705 1.90755 1.87611 1.34176 1.35538 1.20389 0.91630 1.07475 1.08201 1.22326 0.95864 1.00917 1.01752 1.22369 0.94770 0.98382 0.98019 1.41709 1.09731 1.30268 1.31827 0.72575 1.21979 0.86960 0.98655 0.99403 1.23450 0.96273 1.00919 0.98207 0.91155 0.77755 0.87900 0.89649 0.92100 0.88193 0.88847 0.92055 0.74830 0.82085 0.78003 0.80432 0.90664 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.64 13.96 21.66 0.30 -57.34 16 2 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 3 Si 0.96 40.70 27.74 68.60 1.90 42.60 16 4 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 6 H -0.24 -8.79 6.52 99.48 0.65 -8.14 16 7 C -0.32 -19.71 10.16 84.04 0.85 -18.85 16 8 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 9 N -0.60 -29.82 5.09 -306.99 -1.56 -31.38 16 10 C 0.46 22.16 7.72 87.66 0.68 22.83 16 11 O -0.60 -35.15 15.58 -3.08 -0.05 -35.20 16 12 C 0.03 1.09 4.82 85.55 0.41 1.50 16 13 N -0.49 -16.35 5.08 -808.82 -4.11 -20.46 16 14 C 0.04 1.23 4.51 46.15 0.21 1.44 16 15 H 0.09 3.09 7.95 -2.39 -0.02 3.07 16 16 C -0.10 -2.21 6.53 32.57 0.21 -2.00 16 17 C -0.10 -2.18 6.34 32.57 0.21 -1.97 16 18 C 0.04 0.93 4.80 46.15 0.22 1.15 16 19 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 20 C 0.12 2.81 2.27 46.60 0.11 2.91 16 21 H 0.08 2.01 7.19 -2.38 -0.02 1.99 16 22 N -0.70 -12.54 3.63 -438.36 -1.59 -14.13 16 23 C 0.59 13.43 7.80 86.62 0.68 14.10 16 24 O -0.60 -18.87 16.64 -4.10 -0.07 -18.94 16 25 C -0.27 -4.55 6.29 -19.04 -0.12 -4.67 16 26 C -0.19 -1.94 10.56 23.62 0.25 -1.69 16 27 C -0.01 -0.04 11.89 83.12 0.99 0.94 16 28 N -0.54 -3.34 5.90 -194.56 -1.15 -4.49 16 29 H 0.43 -0.30 8.96 -92.71 -0.83 -1.13 16 30 C 0.07 0.92 11.69 83.91 0.98 1.90 16 31 C -0.15 -3.12 5.41 32.20 0.17 -2.95 16 32 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.39 16.44 5.76 -92.70 -0.53 15.91 16 34 H 0.10 3.35 8.09 -2.38 -0.02 3.33 16 35 H 0.09 2.58 5.10 -2.39 -0.01 2.57 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 37 H 0.10 1.40 7.86 -2.39 -0.02 1.39 16 38 H 0.09 1.55 6.48 -2.39 -0.02 1.53 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.41 4.91 7.14 -92.71 -0.66 4.25 16 41 H 0.16 0.98 7.69 -2.91 -0.02 0.95 16 42 H 0.20 -0.23 8.06 -2.91 -0.02 -0.25 16 43 H 0.18 2.19 8.06 -2.91 -0.02 2.16 16 44 H 0.07 1.69 6.95 -2.39 -0.02 1.67 16 45 H 0.11 1.60 7.38 -2.38 -0.02 1.58 16 Total: -1.00 -88.49 363.44 -1.03 -89.52 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -1.02 Total: 35.52 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 6.31 Total: 14.29 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -8.11 Total: -127.80 kcal Atomic # 8 Polarization: -54.02 SS G_CDS: -0.12 Total: -54.14 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.90 Total: 42.60 kcal Total: -88.49 -1.03 -89.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109316292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.386 kcal (2) G-P(sol) polarization free energy of solvation -88.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds