Wall clock time and date at job start Tue Mar 31 2020 16:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00290 * 2 1 4 4 H 1.48500 * 109.46996 * 270.00211 * 3 2 1 5 5 H 1.48500 * 109.46729 * 30.00246 * 3 2 1 6 6 H 1.48493 * 109.47074 * 150.00333 * 3 2 1 7 7 C 1.38820 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.50237 * 130.84293 * 0.03239 * 9 7 2 11 11 H 1.09001 * 116.45593 * 359.97438 * 10 9 7 12 12 C 1.55841 * 101.05128 * 233.96646 * 10 9 7 13 13 C 1.54859 * 103.44658 * 327.05860 * 12 10 9 14 14 C 1.50242 * 130.83983 * 180.02562 * 9 7 2 15 15 H 1.09003 * 116.45222 * 0.02562 * 14 9 7 16 16 C 1.55843 * 101.05329 * 233.97309 * 14 9 7 17 17 H 1.08997 * 110.76564 * 85.61070 * 16 14 9 18 18 N 1.46497 * 110.62409 * 208.57220 * 16 14 9 19 19 C 1.34780 * 119.99879 * 269.99556 * 18 16 14 20 20 O 1.21283 * 119.99939 * 0.02562 * 19 18 16 21 21 C 1.50701 * 119.99931 * 180.02562 * 19 18 16 22 22 C 1.52998 * 109.46711 * 180.02562 * 21 19 18 23 23 N 1.46500 * 109.47003 * 180.02562 * 22 21 19 24 24 C 1.34749 * 120.03982 * 269.72260 * 23 22 21 25 25 N 1.30644 * 121.49387 * 179.74585 * 24 23 22 26 26 C 1.33520 * 121.49915 * 0.53850 * 25 24 23 27 27 C 1.36191 * 119.91497 * 359.73085 * 26 25 24 28 28 C 1.35023 * 120.04496 * 89.99590 * 23 22 21 29 29 O 1.21982 * 120.70502 * 0.02562 * 28 23 22 30 30 C 1.54852 * 103.44318 * 327.05805 * 16 14 9 31 31 H 0.96994 * 119.99787 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.63338 * 85.54526 * 12 10 9 33 33 H 1.09003 * 110.63091 * 208.56994 * 12 10 9 34 34 H 1.08998 * 110.62788 * 118.48600 * 13 12 10 35 35 H 1.09001 * 110.62343 * 241.35528 * 13 12 10 36 36 H 0.96995 * 120.00596 * 90.00619 * 18 16 14 37 37 H 1.08998 * 109.47156 * 299.99873 * 21 19 18 38 38 H 1.08991 * 109.47112 * 60.00328 * 21 19 18 39 39 H 1.09004 * 109.47379 * 299.99922 * 22 21 19 40 40 H 1.08999 * 109.47768 * 60.00264 * 22 21 19 41 41 H 1.07999 * 119.25448 * 0.02562 * 24 23 22 42 42 H 1.08007 * 120.04033 * 179.75444 * 26 25 24 43 43 H 1.08000 * 120.70664 * 179.97438 * 27 26 25 44 44 H 1.09007 * 110.62620 * 118.49217 * 30 16 14 45 45 H 1.08997 * 110.63016 * 241.50700 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1500 -2.6706 -0.0007 11 1 -0.8105 -1.8035 -0.0004 12 6 -0.2743 -3.6104 1.2362 13 6 1.0667 -4.3848 1.2364 14 6 1.8186 -3.8073 -0.0005 15 1 2.8998 -3.9457 -0.0001 16 6 1.0668 -4.3847 -1.2375 17 1 1.6233 -4.1888 -2.1540 18 7 0.8330 -5.8217 -1.0747 19 6 1.7478 -6.7076 -1.5163 20 8 2.7647 -6.3151 -2.0480 21 6 1.5070 -8.1859 -1.3493 22 6 2.6894 -8.9639 -1.9302 23 7 2.4551 -10.4009 -1.7685 24 6 2.8825 -11.0333 -0.6580 25 7 2.6845 -12.3126 -0.4822 26 6 2.0591 -13.0543 -1.3995 27 6 1.6070 -12.4766 -2.5470 28 6 1.8157 -11.0946 -2.7345 29 8 1.4275 -10.5377 -3.7480 30 6 -0.2742 -3.6105 -1.2375 31 1 -0.4849 0.8400 0.0004 32 1 -0.3816 -3.0284 2.1516 33 1 -1.1133 -4.2956 1.1152 34 1 1.6245 -4.1866 2.1517 35 1 0.8925 -5.4542 1.1180 36 1 0.0198 -6.1357 -0.6493 37 1 1.4040 -8.4198 -0.2897 38 1 0.5939 -8.4668 -1.8739 39 1 2.7930 -8.7300 -2.9898 40 1 3.6024 -8.6830 -1.4053 41 1 3.3963 -10.4689 0.1061 42 1 1.9115 -14.1110 -1.2315 43 1 1.0998 -13.0645 -3.2977 44 1 -0.3815 -3.0283 -2.1529 45 1 -1.1133 -4.2956 -1.1166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109905950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:28 Heat of formation + Delta-G solvation = 2.513426 kcal Electronic energy + Delta-G solvation = -28381.963501 eV Core-core repulsion = 24400.648898 eV Total energy + Delta-G solvation = -3981.314603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.81417 -41.46636 -39.88049 -38.68864 -36.72388 -35.45407 -34.21554 -32.46073 -31.97338 -30.99552 -30.67402 -29.20473 -26.79742 -25.99487 -25.33874 -23.90569 -22.79169 -21.81234 -21.14392 -20.12153 -19.33811 -19.01645 -18.74499 -18.14756 -17.28387 -17.24362 -16.80354 -16.69701 -16.54721 -16.04222 -15.65372 -15.46022 -15.40155 -14.90721 -14.44362 -14.09332 -14.08314 -13.93590 -13.83956 -13.61944 -13.45263 -13.19158 -12.88465 -12.77968 -12.59477 -12.38536 -12.33021 -11.99980 -11.88199 -11.57387 -11.55368 -11.27820 -11.18784 -11.05243 -11.02429 -10.81066 -10.76759 -9.97916 -9.57769 -8.85499 -7.79997 -5.18870 -0.30505 0.81982 1.33901 1.45901 1.47245 1.55132 1.65269 2.23924 2.50608 2.64657 3.25185 3.33897 3.50167 3.54749 3.61427 3.71727 3.89131 3.92750 4.04298 4.14013 4.17437 4.30650 4.39798 4.44758 4.49681 4.55638 4.61692 4.69835 4.73994 4.77994 4.82277 4.89858 4.98891 5.09780 5.16036 5.25218 5.35332 5.41385 5.48590 5.55912 5.57976 5.76425 5.90160 6.26356 6.62087 6.73449 6.82863 7.05449 7.31060 7.69498 8.55274 9.27049 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.002265 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.430996 B =12360.190471 C =12427.852163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.066 4.066 3 Si 0.975 3.025 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.223 4.223 8 H 0.073 0.927 9 N -0.619 5.619 10 C 0.139 3.861 11 H 0.115 0.885 12 C -0.127 4.127 13 C -0.114 4.114 14 C 0.120 3.880 15 H 0.072 0.928 16 C 0.145 3.855 17 H 0.051 0.949 18 N -0.698 5.698 19 C 0.516 3.484 20 O -0.585 6.585 21 C -0.141 4.141 22 C 0.106 3.894 23 N -0.514 5.514 24 C 0.385 3.615 25 N -0.558 5.558 26 C 0.170 3.830 27 C -0.314 4.314 28 C 0.499 3.501 29 O -0.590 6.590 30 C -0.129 4.129 31 H 0.248 0.752 32 H 0.034 0.966 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.415 0.585 37 H 0.142 0.858 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.132 0.868 41 H 0.250 0.750 42 H 0.197 0.803 43 H 0.157 0.843 44 H 0.040 0.960 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 -26.599 3.382 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.258 4.258 3 Si 0.804 3.196 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.352 4.352 8 H 0.091 0.909 9 N -0.340 5.340 10 C 0.033 3.967 11 H 0.133 0.867 12 C -0.166 4.166 13 C -0.153 4.153 14 C 0.012 3.988 15 H 0.090 0.910 16 C 0.038 3.962 17 H 0.069 0.931 18 N -0.350 5.350 19 C 0.303 3.697 20 O -0.465 6.465 21 C -0.181 4.181 22 C -0.017 4.017 23 N -0.229 5.229 24 C 0.103 3.897 25 N -0.279 5.279 26 C 0.031 3.969 27 C -0.338 4.338 28 C 0.301 3.699 29 O -0.472 6.472 30 C -0.169 4.169 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.112 0.888 36 H 0.253 0.747 37 H 0.160 0.840 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.150 0.850 41 H 0.265 0.735 42 H 0.214 0.786 43 H 0.175 0.825 44 H 0.059 0.941 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.558 -26.138 2.987 26.354 hybrid contribution -0.224 1.717 -1.080 2.040 sum 1.334 -24.421 1.907 24.532 Atomic orbital electron populations 1.69702 1.05899 1.25003 1.58836 1.25423 0.96547 1.00236 1.03613 0.85123 0.77622 0.79670 0.77196 1.21849 1.21865 1.19928 1.19307 0.90534 0.83578 1.41767 0.90925 1.46721 1.02980 0.99624 1.84716 1.23603 0.85973 0.95330 0.91806 0.86721 1.22954 0.97302 0.97993 0.98383 1.22816 0.96125 0.99476 0.96902 1.23332 0.96071 0.84494 0.94882 0.90994 1.22078 0.96947 0.79232 0.97954 0.93065 1.45971 1.23191 1.05312 1.60496 1.20827 0.82769 0.89047 0.77062 1.90733 1.29134 1.81612 1.45030 1.21874 1.00437 0.89520 1.06260 1.21751 1.00001 0.75505 1.04396 1.46900 1.45856 1.11951 1.18192 1.26080 0.87187 0.89903 0.86496 1.68552 1.22724 1.04588 1.32066 1.23133 0.85592 1.01609 0.86606 1.22976 1.13404 0.93265 1.04170 1.17853 0.79362 0.89594 0.83118 1.90958 1.53975 1.72855 1.29446 1.23147 0.95753 0.98305 0.99701 0.94237 0.94722 0.89492 0.93699 0.88826 0.74698 0.83984 0.88202 0.90450 0.84996 0.73464 0.78600 0.82494 0.94096 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.77 10.48 21.65 0.23 -54.55 16 2 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 3 Si 0.97 45.97 29.55 68.60 2.03 48.00 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.22 -12.44 10.59 84.04 0.89 -11.55 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.62 -30.55 2.99 -615.26 -1.84 -32.39 16 10 C 0.14 6.08 4.69 46.22 0.22 6.29 16 11 H 0.12 5.97 5.57 -2.39 -0.01 5.96 16 12 C -0.13 -4.38 6.44 32.21 0.21 -4.17 16 13 C -0.11 -3.57 6.31 32.21 0.20 -3.37 16 14 C 0.12 4.71 5.35 46.23 0.25 4.96 16 15 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 16 C 0.15 5.04 3.14 46.61 0.15 5.19 16 17 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 18 N -0.70 -16.49 3.71 -434.92 -1.61 -18.10 16 19 C 0.52 12.25 7.83 87.66 0.69 12.93 16 20 O -0.58 -19.55 15.64 -3.04 -0.05 -19.60 16 21 C -0.14 -1.94 6.02 29.85 0.18 -1.76 16 22 C 0.11 1.61 4.67 86.38 0.40 2.02 16 23 N -0.51 -7.11 2.57 -655.03 -1.68 -8.80 16 24 C 0.39 2.90 11.48 180.31 2.07 4.97 16 25 N -0.56 -5.75 10.39 -199.73 -2.08 -7.82 16 26 C 0.17 1.70 11.20 83.96 0.94 2.64 16 27 C -0.31 -4.80 10.07 22.48 0.23 -4.58 16 28 C 0.50 10.61 7.45 84.89 0.63 11.24 16 29 O -0.59 -18.32 16.78 -5.26 -0.09 -18.41 16 30 C -0.13 -4.65 6.20 32.21 0.20 -4.45 16 31 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 2.27 7.82 -2.39 -0.02 2.25 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 2.11 6.40 -2.39 -0.02 2.10 16 36 H 0.42 6.84 7.92 -92.71 -0.73 6.10 16 37 H 0.14 0.79 8.14 -2.39 -0.02 0.78 16 38 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.79 7.41 -2.38 -0.02 1.78 16 40 H 0.13 1.38 7.97 -2.39 -0.02 1.36 16 41 H 0.25 -0.52 8.02 -2.91 -0.02 -0.54 16 42 H 0.20 0.63 8.06 -2.91 -0.02 0.60 16 43 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 44 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.09 2.60 7.38 -2.39 -0.02 2.58 16 Total: -1.00 -81.86 367.56 2.91 -78.95 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.29 Total: 15.58 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 7.71 Total: 17.13 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -6.98 Total: -121.65 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.14 Total: -38.01 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -81.86 2.91 -78.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109905950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.466 kcal (2) G-P(sol) polarization free energy of solvation -81.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds