Wall clock time and date at job start Tue Mar 31 2020 16:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86795 * 120.00123 * 2 1 4 4 H 1.48504 * 109.46983 * 270.00145 * 3 2 1 5 5 H 1.48498 * 109.47330 * 29.99873 * 3 2 1 6 6 H 1.48492 * 109.47238 * 150.00018 * 3 2 1 7 7 C 1.38960 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99419 * 179.72630 * 7 2 1 9 9 N 1.37090 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00132 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99757 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00116 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46879 * 180.02562 * 12 10 9 14 14 C 1.50653 * 110.99847 * 69.10817 * 13 12 10 15 15 H 1.08998 * 115.87723 * 296.64505 * 14 13 12 16 16 C 1.55853 * 101.02649 * 170.23749 * 14 13 12 17 17 C 1.54834 * 103.51769 * 327.00660 * 16 14 13 18 18 C 1.50647 * 110.99845 * 177.19614 * 13 12 10 19 19 H 1.08999 * 115.87959 * 63.35050 * 18 13 12 20 20 C 1.55850 * 101.02834 * 297.65184 * 18 13 12 21 21 H 1.08999 * 110.61224 * 208.49564 * 20 18 13 22 22 N 1.46499 * 110.61359 * 85.67497 * 20 18 13 23 23 C 1.34775 * 120.00271 * 163.58912 * 22 20 18 24 24 O 1.21626 * 119.99995 * 359.97438 * 23 22 20 25 25 C 1.47260 * 119.99904 * 179.97438 * 23 22 20 26 26 C 1.46693 * 126.94080 * 179.97438 * 25 23 22 27 27 C 1.34490 * 106.33423 * 179.97438 * 26 25 23 28 28 N 1.36451 * 108.85385 * 359.97438 * 27 26 25 29 29 H 0.96993 * 124.84873 * 180.02562 * 28 27 26 30 30 C 1.34662 * 110.30115 * 359.74834 * 28 27 26 31 31 C 1.54830 * 103.51857 * 327.00652 * 20 18 13 32 32 H 0.97001 * 119.99964 * 359.97438 * 1 2 3 33 33 H 0.97006 * 120.00171 * 0.02562 * 9 7 2 34 34 H 1.09002 * 109.46903 * 300.00166 * 12 10 9 35 35 H 1.08998 * 109.47249 * 60.00536 * 12 10 9 36 36 H 1.09001 * 110.61505 * 85.50778 * 16 14 13 37 37 H 1.08998 * 110.61389 * 208.34138 * 16 14 13 38 38 H 1.09001 * 110.60963 * 241.49401 * 17 16 14 39 39 H 1.09001 * 110.61489 * 118.50986 * 17 16 14 40 40 H 0.96999 * 119.99880 * 343.58217 * 22 20 18 41 41 H 1.07997 * 126.83298 * 359.95228 * 26 25 23 42 42 H 1.07992 * 125.57554 * 179.97438 * 27 26 25 43 43 H 1.07993 * 125.80489 * 180.29542 * 30 28 27 44 44 H 1.09001 * 110.61086 * 118.50950 * 31 20 18 45 45 H 1.08999 * 110.61418 * 241.49091 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2035 -0.0005 8 1 3.0889 -1.2035 -0.0050 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5580 -0.0016 11 8 3.2102 -3.5580 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1983 -5.9796 -0.0027 14 6 2.9303 -6.0646 1.3113 15 1 3.5598 -5.2106 1.5613 16 6 3.6592 -7.4337 1.1585 17 6 2.6739 -8.2756 0.3113 18 6 1.4814 -7.3028 0.0655 19 1 0.8359 -7.5383 -0.7806 20 6 0.7661 -7.1835 1.4450 21 1 0.6227 -8.1685 1.8893 22 7 -0.5176 -6.4922 1.3023 23 6 -1.4380 -6.5703 2.2838 24 8 -1.2030 -7.2153 3.2878 25 6 -2.7281 -5.8749 2.1405 26 6 -3.8321 -5.8572 3.1062 27 6 -4.8008 -5.1013 2.5595 28 7 -4.3780 -4.6565 1.3407 29 1 -4.8962 -4.0914 0.7466 30 6 -3.1362 -5.1092 1.0832 31 6 1.7514 -6.3416 2.2921 32 1 -0.4850 0.8401 0.0004 33 1 0.3533 -2.3907 -0.0005 34 1 0.6174 -4.9213 0.8880 35 1 0.6168 -4.9202 -0.8920 36 1 4.6061 -7.3078 0.6333 37 1 3.8206 -7.8934 2.1335 38 1 2.3444 -9.1540 0.8663 39 1 3.1324 -8.5671 -0.6336 40 1 -0.7051 -5.9780 0.5014 41 1 -3.8613 -6.3528 4.0653 42 1 -5.7569 -4.8821 3.0111 43 1 -2.5613 -4.9047 0.1922 44 1 1.2859 -5.4073 2.6062 45 1 2.0964 -6.9091 3.1563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110585103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:25 Heat of formation + Delta-G solvation = 16.683600 kcal Electronic energy + Delta-G solvation = -29416.386886 eV Core-core repulsion = 25435.686747 eV Total energy + Delta-G solvation = -3980.700138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41221 -40.93286 -38.55024 -37.78938 -34.20731 -33.94568 -31.90669 -31.14593 -31.12507 -29.77242 -29.42767 -28.11854 -26.43289 -24.19673 -23.41389 -21.56276 -20.67682 -20.52680 -20.11184 -19.39911 -18.79403 -18.60102 -17.79569 -16.62931 -16.35336 -15.89390 -15.51832 -14.95030 -14.70005 -14.56522 -14.33431 -14.02115 -13.87322 -13.73409 -13.57630 -13.31030 -12.88239 -12.79362 -12.25220 -12.17248 -11.99918 -11.93708 -11.78561 -11.47255 -11.38054 -11.22330 -11.11688 -10.91658 -10.52782 -10.41122 -10.24758 -10.22795 -9.71962 -9.50966 -9.03096 -8.83097 -8.52115 -8.46213 -8.07027 -7.96599 -6.44111 -3.83945 1.72864 2.38885 3.08851 3.16177 3.24859 3.30663 3.31601 3.64401 3.87329 3.94037 4.19414 4.66615 4.71562 4.78690 4.83287 4.94266 5.05764 5.10772 5.22246 5.24175 5.31332 5.37667 5.41363 5.50782 5.61265 5.62168 5.77200 5.79988 5.84144 5.92763 5.94228 6.06890 6.14142 6.22534 6.28018 6.34019 6.51152 6.58293 6.66311 6.80631 6.89556 7.21347 7.30635 7.53353 7.61584 8.04630 8.41698 8.60104 9.16852 9.52667 10.04937 10.73818 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008111 B = 0.004864 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3451.277038 B = 5754.888503 C = 8644.321176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.448 3.552 11 O -0.577 6.577 12 C 0.004 3.996 13 N -0.463 5.463 14 C 0.058 3.942 15 H 0.128 0.872 16 C -0.116 4.116 17 C -0.107 4.107 18 C 0.033 3.967 19 H 0.116 0.884 20 C 0.117 3.883 21 H 0.093 0.907 22 N -0.725 5.725 23 C 0.590 3.410 24 O -0.546 6.546 25 C -0.233 4.233 26 C -0.142 4.142 27 C -0.024 4.024 28 N -0.548 5.548 29 H 0.419 0.581 30 C 0.053 3.947 31 C -0.164 4.164 32 H 0.270 0.730 33 H 0.390 0.610 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.399 0.601 41 H 0.146 0.854 42 H 0.169 0.831 43 H 0.172 0.828 44 H 0.072 0.928 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 -13.459 0.773 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.426 4.426 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.233 3.767 11 O -0.461 6.461 12 C -0.128 4.128 13 N -0.186 5.186 14 C -0.050 4.050 15 H 0.146 0.854 16 C -0.154 4.154 17 C -0.146 4.146 18 C -0.076 4.076 19 H 0.134 0.866 20 C 0.011 3.989 21 H 0.111 0.889 22 N -0.379 5.379 23 C 0.379 3.621 24 O -0.424 6.424 25 C -0.244 4.244 26 C -0.167 4.167 27 C -0.151 4.151 28 N -0.142 5.142 29 H 0.255 0.745 30 C -0.084 4.084 31 C -0.204 4.204 32 H 0.080 0.920 33 H 0.223 0.777 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.235 0.765 41 H 0.164 0.836 42 H 0.186 0.814 43 H 0.189 0.811 44 H 0.091 0.909 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.816 -13.571 0.900 15.687 hybrid contribution -1.282 1.526 0.033 1.993 sum -9.098 -12.045 0.932 15.124 Atomic orbital electron populations 1.69604 1.05912 1.28004 1.51037 1.25227 0.95627 0.99633 0.97421 0.85874 0.79286 0.80885 0.78366 1.20432 1.20992 1.19423 1.19689 0.93348 0.82217 1.47306 0.87967 1.41825 1.08986 1.04565 1.64811 1.19676 0.88392 0.84431 0.84207 1.90510 1.13689 1.86968 1.54912 1.22516 0.95874 0.92376 1.02084 1.67528 1.19294 0.99225 1.32516 1.24542 0.95074 0.98227 0.87160 0.85411 1.22613 0.98719 0.94608 0.99476 1.22482 0.94957 0.96550 1.00566 1.24819 0.95086 0.92723 0.94990 0.86635 1.22798 0.82425 0.96443 0.97259 0.88920 1.46311 1.16307 1.53641 1.21602 1.17471 0.82481 0.79530 0.82625 1.90741 1.79677 1.42496 1.29517 1.20458 0.96795 1.09014 0.98100 1.21924 0.92242 1.02643 0.99849 1.21798 1.01349 1.04216 0.87765 1.41603 1.14283 1.41137 1.17196 0.74488 1.21985 0.87080 0.98995 1.00312 1.23772 0.96999 1.00420 0.99186 0.92020 0.77744 0.90883 0.89877 0.90925 0.91478 0.91308 0.90676 0.76465 0.83621 0.81362 0.81129 0.90883 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 2 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.57 -13.93 5.29 -10.96 -0.06 -13.98 16 10 C 0.45 10.33 7.58 -10.98 -0.08 10.25 16 11 O -0.58 -15.33 14.37 5.54 0.08 -15.25 16 12 C 0.00 0.06 4.05 -4.98 -0.02 0.04 16 13 N -0.46 -7.46 5.31 -207.01 -1.10 -8.56 16 14 C 0.06 0.93 4.26 -62.56 -0.27 0.66 16 15 H 0.13 2.45 6.87 -51.93 -0.36 2.10 16 16 C -0.12 -1.47 6.43 -24.24 -0.16 -1.63 16 17 C -0.11 -1.19 6.43 -24.24 -0.16 -1.34 16 18 C 0.03 0.41 4.62 -62.56 -0.29 0.12 16 19 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 20 C 0.12 1.54 2.46 -65.45 -0.16 1.38 16 21 H 0.09 1.25 7.49 -51.93 -0.39 0.87 16 22 N -0.73 -9.45 3.75 -52.53 -0.20 -9.65 16 23 C 0.59 9.02 7.77 -12.59 -0.10 8.92 16 24 O -0.55 -10.17 16.76 5.25 0.09 -10.09 16 25 C -0.23 -3.13 6.29 -103.35 -0.65 -3.78 16 26 C -0.14 -1.76 10.97 -37.49 -0.41 -2.17 16 27 C -0.02 -0.22 11.89 -16.82 -0.20 -0.42 16 28 N -0.55 -4.73 5.90 -12.85 -0.08 -4.81 16 29 H 0.42 2.30 8.96 -40.82 -0.37 1.93 16 30 C 0.05 0.56 11.40 -16.84 -0.19 0.37 16 31 C -0.16 -2.46 5.46 -24.25 -0.13 -2.60 16 32 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.39 9.10 7.90 -40.82 -0.32 8.77 16 34 H 0.07 1.19 3.56 -51.93 -0.18 1.00 16 35 H 0.08 1.23 8.03 -51.93 -0.42 0.82 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.75 7.82 -51.93 -0.41 0.34 16 38 H 0.07 0.65 7.82 -51.93 -0.41 0.25 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.40 4.52 5.44 -40.82 -0.22 4.30 16 41 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 42 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.17 1.38 7.45 -52.49 -0.39 0.99 16 44 H 0.07 1.27 7.07 -51.93 -0.37 0.91 16 45 H 0.08 1.09 7.82 -51.93 -0.41 0.69 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -34.93 362.34 -9.02 -43.95 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -5.86 Total: 18.28 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -3.06 Total: 2.03 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.71 Total: -60.25 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: 0.17 Total: -25.34 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.93 -9.02 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110585103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.629 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds